| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is hyuB [H]
Identifier: 158316589
GI number: 158316589
Start: 5762339
End: 5764099
Strand: Reverse
Name: hyuB [H]
Synonym: Franean1_4825
Alternate gene names: 158316589
Gene position: 5764099-5762339 (Counterclockwise)
Preceding gene: 158316590
Following gene: 158316588
Centisome position: 64.17
GC content: 73.14
Gene sequence:
>1761_bases ATGACCGGCGCGGACCCGGTGCTGGCCGGGATCGTCGACAACCGGCTGCACGCGATCGCCGAGCAGATGGCGCAGGCCAT GCTGCGTTCCTGCCGGTCGATGGTGTTCCAGAGCCGGGACTTCGTCACCGGGATCTTCACCGCCCGAGGCGAGTGGGTCG CGACCAAGGACTACATCCCCGTCCTGGCCGGTTCGCTGCCCAGCGCCCTCGCCGGCGTGACCGAGCGCTTCGCCGCCGAG TTCGCGGCCGGGGACCTGTACGAGGGCGACGTGTTCGTCCTCAACGATCCGTACCACGGCAACAACCACCCGCCGGATAT CACGATCATGAAGCCGGTGTTCCACCGGGGCGTGCACCGATTCTGGACCGTGACGAAGGGGCATCACGCCGACACCGGCG GCGCCGTCGTCGGCTACAACCCGTACGCCCGGGACTGCTGGGAGGACGCACTGCGCATCCCGCCCGTCCGGCTGCACCAC CGCGGGCGGCGCCAGCGGGACGTCTGGGATCTCATCCTGCTGAACCTACGGCTGCCGGACGTCGTCGAGGCCGACCTGGA CTGCCAGATCGGCGCCGCCACGCTCGGCGAGCGCGAGCTGGTCGCGCTGCTGGACGCCTACGGCGTCGAACCGGTCGAGA ACGCCGTCGCCTACCAGCTCGACGCGTCCCGCCGGCACATGCGAGCCGAGATCGGACGGCTGCCGGACGGCGTCTACCGG TCGGTGCGCCACCTCGACGACGGGGGAGCACACCACCGCGAGCCGATCGCGGTGCGCCTGGAGCTGACCATCCGCGGCGA GTCGGCGCTGTTCGACTTCACCGCCTCCGACCCGCAGGTCGTCGGCTACGCGAACTCCACCCCGGCGAACACCGCCGCCG CCGTCCTCATCGGCCTGCTCGGGGTCACCGACCCCACCCAACGCCGCACCAGCGGCGCGCTGGCGGCCCTCGACATCCGC ACCACGCCGGGCACGATCGTGCACGCCGTCGAGCCGGCCGCGACGTCGCTGTGCACGCTGACCGCCTGCGAGACCATCGT CGAGACGGTCTGGGAGGCCGTGGGGCAGGCCGACCCGACGGTGACGAACGCCGCCTGGTGCCGTGGCTACACGTTCGCGG CCATGGGGGTCGACGCGCGCACCGGCCGGCCGTTCGCCGTGACCGGCGCGATGAAGGGCGGCTCGGGCGCCACCGCCGGT TTCGACGGCTGGGACGCCGTGGGGCCGCCGGTCGCGATGGGCGGCGGACGGGAGATCGACGTCGAGCTGCACGAGCTGAC CGCGCCGACCACCGTGCTCAGCCAGGAGTACGAGACCGACTCCGCCGGCGCCGGCCGGTGGCGCGGCGGCCTCGGCGCGG TGTCGCGATGGCGTATTGACCAGGACGACCTGTCGGTGCTGTGCATCGGATCAGGTGCCCTCGACCTGACAGCGCCGTTC GGCGCGGCGGGCGGGGCGCCCGCCCCCGCCAACCGCGGCATCGTCCACCACGCCGACGGGCGGATCAGCCGCCCCCCGAC GAACTCCCTGCTACGGCTTAACCGCGGGGACGTGGTCGAGATCCACACCTCCGGCGGAGGCGGTTTCGGCGACCCCCTCG ACCGTCCCGTCGACGCGGTCGCCGACGACGTCCGCGACGGCCTCGTCTCGCCGACGGCCGCCCGCGATGTCTACGGCGTC ATCCTCGACCCGATCACCGATGAGGTGGACGCCGCCGCGACCGCCGCCCGCCGCGCGGCAGCCCGCTCCCGCTCCCGCTG A
Upstream 100 bases:
>100_bases CCGTCCTGGTCTTCGCGGCCACTGACACCGCGGACGCCGTCCTGCACCGGCTCGGGCTCGTCGGCGTCGCCGGCGCCGGC GACGCCGACGCGGCGGCCCG
Downstream 100 bases:
>100_bases GGCTGGCCAGTCCGGCCGGCATCCGTTGAGAATTTTTTTTCTGCCGAGTGATGGCAGAGCCGCCAAACCTCGGCCAGCCT AATGTTCGGCTGCGTGACAT
Product: 5-oxoprolinase
Products: ADP; phosphate; N-carbamoylsarcosine
Alternate protein names: ORF3 [H]
Number of amino acids: Translated: 586; Mature: 585
Protein sequence:
>586_residues MTGADPVLAGIVDNRLHAIAEQMAQAMLRSCRSMVFQSRDFVTGIFTARGEWVATKDYIPVLAGSLPSALAGVTERFAAE FAAGDLYEGDVFVLNDPYHGNNHPPDITIMKPVFHRGVHRFWTVTKGHHADTGGAVVGYNPYARDCWEDALRIPPVRLHH RGRRQRDVWDLILLNLRLPDVVEADLDCQIGAATLGERELVALLDAYGVEPVENAVAYQLDASRRHMRAEIGRLPDGVYR SVRHLDDGGAHHREPIAVRLELTIRGESALFDFTASDPQVVGYANSTPANTAAAVLIGLLGVTDPTQRRTSGALAALDIR TTPGTIVHAVEPAATSLCTLTACETIVETVWEAVGQADPTVTNAAWCRGYTFAAMGVDARTGRPFAVTGAMKGGSGATAG FDGWDAVGPPVAMGGGREIDVELHELTAPTTVLSQEYETDSAGAGRWRGGLGAVSRWRIDQDDLSVLCIGSGALDLTAPF GAAGGAPAPANRGIVHHADGRISRPPTNSLLRLNRGDVVEIHTSGGGGFGDPLDRPVDAVADDVRDGLVSPTAARDVYGV ILDPITDEVDAAATAARRAAARSRSR
Sequences:
>Translated_586_residues MTGADPVLAGIVDNRLHAIAEQMAQAMLRSCRSMVFQSRDFVTGIFTARGEWVATKDYIPVLAGSLPSALAGVTERFAAE FAAGDLYEGDVFVLNDPYHGNNHPPDITIMKPVFHRGVHRFWTVTKGHHADTGGAVVGYNPYARDCWEDALRIPPVRLHH RGRRQRDVWDLILLNLRLPDVVEADLDCQIGAATLGERELVALLDAYGVEPVENAVAYQLDASRRHMRAEIGRLPDGVYR SVRHLDDGGAHHREPIAVRLELTIRGESALFDFTASDPQVVGYANSTPANTAAAVLIGLLGVTDPTQRRTSGALAALDIR TTPGTIVHAVEPAATSLCTLTACETIVETVWEAVGQADPTVTNAAWCRGYTFAAMGVDARTGRPFAVTGAMKGGSGATAG FDGWDAVGPPVAMGGGREIDVELHELTAPTTVLSQEYETDSAGAGRWRGGLGAVSRWRIDQDDLSVLCIGSGALDLTAPF GAAGGAPAPANRGIVHHADGRISRPPTNSLLRLNRGDVVEIHTSGGGGFGDPLDRPVDAVADDVRDGLVSPTAARDVYGV ILDPITDEVDAAATAARRAAARSRSR >Mature_585_residues TGADPVLAGIVDNRLHAIAEQMAQAMLRSCRSMVFQSRDFVTGIFTARGEWVATKDYIPVLAGSLPSALAGVTERFAAEF AAGDLYEGDVFVLNDPYHGNNHPPDITIMKPVFHRGVHRFWTVTKGHHADTGGAVVGYNPYARDCWEDALRIPPVRLHHR GRRQRDVWDLILLNLRLPDVVEADLDCQIGAATLGERELVALLDAYGVEPVENAVAYQLDASRRHMRAEIGRLPDGVYRS VRHLDDGGAHHREPIAVRLELTIRGESALFDFTASDPQVVGYANSTPANTAAAVLIGLLGVTDPTQRRTSGALAALDIRT TPGTIVHAVEPAATSLCTLTACETIVETVWEAVGQADPTVTNAAWCRGYTFAAMGVDARTGRPFAVTGAMKGGSGATAGF DGWDAVGPPVAMGGGREIDVELHELTAPTTVLSQEYETDSAGAGRWRGGLGAVSRWRIDQDDLSVLCIGSGALDLTAPFG AAGGAPAPANRGIVHHADGRISRPPTNSLLRLNRGDVVEIHTSGGGGFGDPLDRPVDAVADDVRDGLVSPTAARDVYGVI LDPITDEVDAAATAARRAAARSRSR
Specific function: HyuA and hyuB convert D- and L-substituted hydantoins to corresponding N-carbamyl-amino acids [H]
COG id: COG0146
COG function: function code EQ; N-methylhydantoinase B/acetone carboxylase, alpha subunit
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the oxoprolinase family [H]
Homologues:
Organism=Homo sapiens, GI48314820, Length=555, Percent_Identity=27.5675675675676, Blast_Score=131, Evalue=2e-30, Organism=Caenorhabditis elegans, GI133901900, Length=558, Percent_Identity=25.8064516129032, Blast_Score=139, Evalue=5e-33, Organism=Caenorhabditis elegans, GI133901902, Length=526, Percent_Identity=25.2851711026616, Blast_Score=120, Evalue=2e-27, Organism=Saccharomyces cerevisiae, GI6322634, Length=561, Percent_Identity=25.4901960784314, Blast_Score=137, Evalue=5e-33, Organism=Drosophila melanogaster, GI45550492, Length=561, Percent_Identity=26.2032085561497, Blast_Score=128, Evalue=1e-29,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003692 [H]
Pfam domain/function: PF02538 Hydantoinase_B [H]
EC number: 3.5.2.14
Molecular weight: Translated: 62236; Mature: 62104
Theoretical pI: Translated: 5.44; Mature: 5.44
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTGADPVLAGIVDNRLHAIAEQMAQAMLRSCRSMVFQSRDFVTGIFTARGEWVATKDYIP CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCEEEECCCHH VLAGSLPSALAGVTERFAAEFAAGDLYEGDVFVLNDPYHGNNHPPDITIMKPVFHRGVHR HHHCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCEEEECHHHHCCHHH FWTVTKGHHADTGGAVVGYNPYARDCWEDALRIPPVRLHHRGRRQRDVWDLILLNLRLPD HEEEECCCCCCCCCEEEECCCHHHHHHHHHHCCCCHHHHHCCCCCHHHHHHHHHHCCCCH VVEADLDCQIGAATLGERELVALLDAYGVEPVENAVAYQLDASRRHMRAEIGRLPDGVYR HHCCCCCCEECCCCCCCHHHHHHHHHCCCCHHHHHHEEEECHHHHHHHHHHHCCCHHHHH SVRHLDDGGAHHREPIAVRLELTIRGESALFDFTASDPQVVGYANSTPANTAAAVLIGLL HHHHCCCCCCCCCCCEEEEEEEEEECCCEEEEEECCCCEEEEECCCCCCHHHHHHHHHHH GVTDPTQRRTSGALAALDIRTTPGTIVHAVEPAATSLCTLTACETIVETVWEAVGQADPT CCCCCHHHHCCCCEEEEEEECCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCCCC VTNAAWCRGYTFAAMGVDARTGRPFAVTGAMKGGSGATAGFDGWDAVGPPVAMGGGREID CCCHHHHCCEEEEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEECCCCCEEE VELHELTAPTTVLSQEYETDSAGAGRWRGGLGAVSRWRIDQDDLSVLCIGSGALDLTAPF EEEECCCCCHHHHHCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCEEEEEECCCEEECCCC GAAGGAPAPANRGIVHHADGRISRPPTNSLLRLNRGDVVEIHTSGGGGFGDPLDRPVDAV CCCCCCCCCCCCCEEECCCCCCCCCCCCCEEEECCCCEEEEEECCCCCCCCCCCCHHHHH ADDVRDGLVSPTAARDVYGVILDPITDEVDAAATAARRAAARSRSR HHHHHHCCCCCHHHHHHHHEEECCCCHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure TGADPVLAGIVDNRLHAIAEQMAQAMLRSCRSMVFQSRDFVTGIFTARGEWVATKDYIP CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCEEEECCCHH VLAGSLPSALAGVTERFAAEFAAGDLYEGDVFVLNDPYHGNNHPPDITIMKPVFHRGVHR HHHCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCEEEECHHHHCCHHH FWTVTKGHHADTGGAVVGYNPYARDCWEDALRIPPVRLHHRGRRQRDVWDLILLNLRLPD HEEEECCCCCCCCCEEEECCCHHHHHHHHHHCCCCHHHHHCCCCCHHHHHHHHHHCCCCH VVEADLDCQIGAATLGERELVALLDAYGVEPVENAVAYQLDASRRHMRAEIGRLPDGVYR HHCCCCCCEECCCCCCCHHHHHHHHHCCCCHHHHHHEEEECHHHHHHHHHHHCCCHHHHH SVRHLDDGGAHHREPIAVRLELTIRGESALFDFTASDPQVVGYANSTPANTAAAVLIGLL HHHHCCCCCCCCCCCEEEEEEEEEECCCEEEEEECCCCEEEEECCCCCCHHHHHHHHHHH GVTDPTQRRTSGALAALDIRTTPGTIVHAVEPAATSLCTLTACETIVETVWEAVGQADPT CCCCCHHHHCCCCEEEEEEECCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCCCC VTNAAWCRGYTFAAMGVDARTGRPFAVTGAMKGGSGATAGFDGWDAVGPPVAMGGGREID CCCHHHHCCEEEEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEECCCCCEEE VELHELTAPTTVLSQEYETDSAGAGRWRGGLGAVSRWRIDQDDLSVLCIGSGALDLTAPF EEEECCCCCHHHHHCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCEEEEEECCCEEECCCC GAAGGAPAPANRGIVHHADGRISRPPTNSLLRLNRGDVVEIHTSGGGGFGDPLDRPVDAV CCCCCCCCCCCCCEEECCCCCCCCCCCCCEEEECCCCEEEEEECCCCCCCCCCCCHHHHH ADDVRDGLVSPTAARDVYGVILDPITDEVDAAATAARRAAARSRSR HHHHHHCCCCCHHHHHHHHEEECCCCHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; N-methylimidazolidine-2,4-dione; H2O
Specific reaction: ATP + N-methylimidazolidine-2,4-dione + 2 H2O = ADP + phosphate + N-carbamoylsarcosine
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 1732229 [H]