| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is ucpA [C]
Identifier: 158316549
GI number: 158316549
Start: 5710769
End: 5711584
Strand: Reverse
Name: ucpA [C]
Synonym: Franean1_4785
Alternate gene names: 158316549
Gene position: 5711584-5710769 (Counterclockwise)
Preceding gene: 158316550
Following gene: 158316545
Centisome position: 63.59
GC content: 70.22
Gene sequence:
>816_bases ATGGGAAAGCTCGACGGCAAGGTCGCGTTCATCACCGGCGCCGCCCGAGGCCAGGGCCGCAGCCACGCGGTCCGGTTAGC GCAGGAGGGTGCCGACATCATCGCGGTGGACATCTGCGCCCAGATGGAGTCGGTGCCTTACCCGATGGCGACTCCGGACG ACCTCGAGCTGACCGTGAAGGCGGTCGAGGAGACGGGACGGCGGATCGTCGCCCGGCAGGCTGACGTCCGCGACGTGTCG GCGCTGGGGAAGGCGTTCCAGGACGGCGTCGCCGAGCTGGGCCCGGTCGACATCGTGCTGGCGAACGCCGGTATCGGGCC GGGCGGGGCGGCGTCGGAGGACGAGCAGTGGGAGGACGTCGTCGGCGTCAACCTCACCGGTGTGTGGAACACCGGCCGGG TGTCGATCCCGTCGATGGTCGAGCGGGGCCAGGGTGGGGCGATCGTGCTTACCAGCTCCACTGGCGGCCTGATCGGTGTG GGTATCCCGACGGCGGGTTTCCTGGGTTACACCGCGGCCAAGCACGGCGTCGTCGGACTCATGCGGTCGTGGGCCAACTA CCTGGCGCCGCACAACATCCGGGTGAACAGCGTCGCCCCCACCACCGTGAAGACGCCCATGGCCGCGAACGGGGACCTGT CGGTCATCACGGCGGGGTCCCCGGAGCTCGCGCGGGTGCTGGCCAACGCGATGCCCGTCGACGCGGTGGACCCGCTGGAC GTCTCGAACGCCATCGCCTGGCTGGTGTCGGATGACGCCCGGTACGTGACCGGCACCGTCGTCCCGGTCGACGCGGGCCA GTTGAACAAGCGGTAA
Upstream 100 bases:
>100_bases GCTGGGAGACGCTGCCGATCACCGTCGGTTAGCTCGAGTTACGCCGGTCCGCACGGCACGGCTCGCCCGCACCACCGCAC CACGACTCAGGGAGAAACAG
Downstream 100 bases:
>100_bases CACGCGGAGTGCGCGAAGCGGGTGCGGCGGGTTCGCCGCACCCGCCCGGTCCGAGGGTGCTACGGCGTGAGCAGGTCCAG GGTGCCGAGGTCGCGGATGG
Product: short-chain dehydrogenase/reductase SDR
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 271; Mature: 270
Protein sequence:
>271_residues MGKLDGKVAFITGAARGQGRSHAVRLAQEGADIIAVDICAQMESVPYPMATPDDLELTVKAVEETGRRIVARQADVRDVS ALGKAFQDGVAELGPVDIVLANAGIGPGGAASEDEQWEDVVGVNLTGVWNTGRVSIPSMVERGQGGAIVLTSSTGGLIGV GIPTAGFLGYTAAKHGVVGLMRSWANYLAPHNIRVNSVAPTTVKTPMAANGDLSVITAGSPELARVLANAMPVDAVDPLD VSNAIAWLVSDDARYVTGTVVPVDAGQLNKR
Sequences:
>Translated_271_residues MGKLDGKVAFITGAARGQGRSHAVRLAQEGADIIAVDICAQMESVPYPMATPDDLELTVKAVEETGRRIVARQADVRDVS ALGKAFQDGVAELGPVDIVLANAGIGPGGAASEDEQWEDVVGVNLTGVWNTGRVSIPSMVERGQGGAIVLTSSTGGLIGV GIPTAGFLGYTAAKHGVVGLMRSWANYLAPHNIRVNSVAPTTVKTPMAANGDLSVITAGSPELARVLANAMPVDAVDPLD VSNAIAWLVSDDARYVTGTVVPVDAGQLNKR >Mature_270_residues GKLDGKVAFITGAARGQGRSHAVRLAQEGADIIAVDICAQMESVPYPMATPDDLELTVKAVEETGRRIVARQADVRDVSA LGKAFQDGVAELGPVDIVLANAGIGPGGAASEDEQWEDVVGVNLTGVWNTGRVSIPSMVERGQGGAIVLTSSTGGLIGVG IPTAGFLGYTAAKHGVVGLMRSWANYLAPHNIRVNSVAPTTVKTPMAANGDLSVITAGSPELARVLANAMPVDAVDPLDV SNAIAWLVSDDARYVTGTVVPVDAGQLNKR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI15277342, Length=271, Percent_Identity=32.4723247232472, Blast_Score=98, Evalue=7e-21, Organism=Homo sapiens, GI32483357, Length=267, Percent_Identity=29.2134831460674, Blast_Score=90, Evalue=3e-18, Organism=Homo sapiens, GI31542939, Length=255, Percent_Identity=28.6274509803922, Blast_Score=85, Evalue=9e-17, Organism=Homo sapiens, GI4504505, Length=273, Percent_Identity=29.3040293040293, Blast_Score=84, Evalue=2e-16, Organism=Homo sapiens, GI224922801, Length=182, Percent_Identity=31.8681318681319, Blast_Score=75, Evalue=7e-14, Organism=Homo sapiens, GI5031737, Length=267, Percent_Identity=28.8389513108614, Blast_Score=75, Evalue=7e-14, Organism=Homo sapiens, GI66933014, Length=272, Percent_Identity=28.6764705882353, Blast_Score=75, Evalue=8e-14, Organism=Homo sapiens, GI7705925, Length=266, Percent_Identity=29.6992481203008, Blast_Score=73, Evalue=3e-13, Organism=Homo sapiens, GI40254992, Length=264, Percent_Identity=28.7878787878788, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI10190704, Length=268, Percent_Identity=27.9850746268657, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI19923817, Length=277, Percent_Identity=25.6317689530686, Blast_Score=66, Evalue=3e-11, Organism=Homo sapiens, GI4758504, Length=276, Percent_Identity=26.0869565217391, Blast_Score=65, Evalue=9e-11, Organism=Escherichia coli, GI87082100, Length=274, Percent_Identity=32.4817518248175, Blast_Score=128, Evalue=3e-31, Organism=Escherichia coli, GI1789208, Length=270, Percent_Identity=30.7407407407407, Blast_Score=112, Evalue=3e-26, Organism=Escherichia coli, GI1787335, Length=265, Percent_Identity=30.188679245283, Blast_Score=96, Evalue=3e-21, Organism=Escherichia coli, GI1790717, Length=270, Percent_Identity=30, Blast_Score=87, Evalue=1e-18, Organism=Escherichia coli, GI1788459, Length=265, Percent_Identity=29.0566037735849, Blast_Score=87, Evalue=2e-18, Organism=Escherichia coli, GI87082160, Length=268, Percent_Identity=27.2388059701493, Blast_Score=84, Evalue=7e-18, Organism=Escherichia coli, GI2367175, Length=266, Percent_Identity=28.9473684210526, Blast_Score=80, Evalue=2e-16, Organism=Escherichia coli, GI1787905, Length=268, Percent_Identity=28.7313432835821, Blast_Score=78, Evalue=7e-16, Organism=Escherichia coli, GI1789378, Length=270, Percent_Identity=26.2962962962963, Blast_Score=73, Evalue=2e-14, Organism=Escherichia coli, GI1786812, Length=272, Percent_Identity=25.7352941176471, Blast_Score=65, Evalue=5e-12, Organism=Escherichia coli, GI2367365, Length=268, Percent_Identity=26.865671641791, Blast_Score=64, Evalue=1e-11, Organism=Caenorhabditis elegans, GI25147288, Length=267, Percent_Identity=27.3408239700375, Blast_Score=87, Evalue=1e-17, Organism=Caenorhabditis elegans, GI17555706, Length=267, Percent_Identity=30.3370786516854, Blast_Score=84, Evalue=6e-17, Organism=Caenorhabditis elegans, GI17560676, Length=267, Percent_Identity=25.8426966292135, Blast_Score=81, Evalue=6e-16, Organism=Caenorhabditis elegans, GI17561402, Length=271, Percent_Identity=27.3062730627306, Blast_Score=79, Evalue=2e-15, Organism=Caenorhabditis elegans, GI17568967, Length=255, Percent_Identity=28.2352941176471, Blast_Score=77, Evalue=7e-15, Organism=Caenorhabditis elegans, GI115534694, Length=267, Percent_Identity=29.2134831460674, Blast_Score=76, Evalue=1e-14, Organism=Caenorhabditis elegans, GI193203117, Length=238, Percent_Identity=28.5714285714286, Blast_Score=75, Evalue=3e-14, Organism=Caenorhabditis elegans, GI193203115, Length=235, Percent_Identity=28.5106382978723, Blast_Score=73, Evalue=1e-13, Organism=Caenorhabditis elegans, GI17564282, Length=238, Percent_Identity=26.890756302521, Blast_Score=72, Evalue=3e-13, Organism=Caenorhabditis elegans, GI17562910, Length=279, Percent_Identity=26.5232974910394, Blast_Score=71, Evalue=5e-13, Organism=Caenorhabditis elegans, GI17560150, Length=280, Percent_Identity=28.5714285714286, Blast_Score=67, Evalue=7e-12, Organism=Caenorhabditis elegans, GI17531453, Length=281, Percent_Identity=27.4021352313167, Blast_Score=66, Evalue=2e-11, Organism=Caenorhabditis elegans, GI17560220, Length=214, Percent_Identity=30.3738317757009, Blast_Score=65, Evalue=3e-11, Organism=Saccharomyces cerevisiae, GI6322861, Length=197, Percent_Identity=32.994923857868, Blast_Score=80, Evalue=3e-16, Organism=Saccharomyces cerevisiae, GI6324126, Length=272, Percent_Identity=26.8382352941176, Blast_Score=64, Evalue=2e-11, Organism=Drosophila melanogaster, GI23397609, Length=270, Percent_Identity=31.8518518518519, Blast_Score=91, Evalue=1e-18, Organism=Drosophila melanogaster, GI21355319, Length=264, Percent_Identity=25, Blast_Score=84, Evalue=8e-17, Organism=Drosophila melanogaster, GI24644339, Length=268, Percent_Identity=28.7313432835821, Blast_Score=80, Evalue=1e-15, Organism=Drosophila melanogaster, GI24639444, Length=272, Percent_Identity=28.3088235294118, Blast_Score=78, Evalue=5e-15, Organism=Drosophila melanogaster, GI28571526, Length=281, Percent_Identity=28.8256227758007, Blast_Score=78, Evalue=6e-15, Organism=Drosophila melanogaster, GI18859837, Length=201, Percent_Identity=29.8507462686567, Blast_Score=77, Evalue=2e-14, Organism=Drosophila melanogaster, GI21357041, Length=281, Percent_Identity=27.4021352313167, Blast_Score=72, Evalue=5e-13, Organism=Drosophila melanogaster, GI17737361, Length=218, Percent_Identity=29.8165137614679, Blast_Score=69, Evalue=2e-12, Organism=Drosophila melanogaster, GI24643142, Length=265, Percent_Identity=27.9245283018868, Blast_Score=66, Evalue=3e-11, Organism=Drosophila melanogaster, GI24649181, Length=223, Percent_Identity=30.9417040358744, Blast_Score=65, Evalue=5e-11, Organism=Drosophila melanogaster, GI21357673, Length=210, Percent_Identity=26.6666666666667, Blast_Score=65, Evalue=5e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: 1.-.-.- [C]
Molecular weight: Translated: 27888; Mature: 27757
Theoretical pI: Translated: 4.67; Mature: 4.67
Prosite motif: PS00061 ADH_SHORT
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGKLDGKVAFITGAARGQGRSHAVRLAQEGADIIAVDICAQMESVPYPMATPDDLELTVK CCCCCCEEEEEEECCCCCCHHHHHHHHHCCCCEEEEEEHHHHHCCCCCCCCCCCHHHHHH AVEETGRRIVARQADVRDVSALGKAFQDGVAELGPVDIVLANAGIGPGGAASEDEQWEDV HHHHCCCEEEHHCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCHHHH VGVNLTGVWNTGRVSIPSMVERGQGGAIVLTSSTGGLIGVGIPTAGFLGYTAAKHGVVGL HCEEEEEECCCCCEECHHHHHCCCCCEEEEEECCCCEEEECCCCCCHHHHHHHHHHHHHH MRSWANYLAPHNIRVNSVAPTTVKTPMAANGDLSVITAGSPELARVLANAMPVDAVDPLD HHHHHHHCCCCCEEECCCCCCEECCCCCCCCCEEEEECCCHHHHHHHHHCCCCCCCCCCC VSNAIAWLVSDDARYVTGTVVPVDAGQLNKR CCCEEEEEEECCCEEEEEEEEEECCCCCCCC >Mature Secondary Structure GKLDGKVAFITGAARGQGRSHAVRLAQEGADIIAVDICAQMESVPYPMATPDDLELTVK CCCCCEEEEEEECCCCCCHHHHHHHHHCCCCEEEEEEHHHHHCCCCCCCCCCCHHHHHH AVEETGRRIVARQADVRDVSALGKAFQDGVAELGPVDIVLANAGIGPGGAASEDEQWEDV HHHHCCCEEEHHCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCHHHH VGVNLTGVWNTGRVSIPSMVERGQGGAIVLTSSTGGLIGVGIPTAGFLGYTAAKHGVVGL HCEEEEEECCCCCEECHHHHHCCCCCEEEEEECCCCEEEECCCCCCHHHHHHHHHHHHHH MRSWANYLAPHNIRVNSVAPTTVKTPMAANGDLSVITAGSPELARVLANAMPVDAVDPLD HHHHHHHCCCCCEEECCCCCCEECCCCCCCCCEEEEECCCHHHHHHHHHCCCCCCCCCCC VSNAIAWLVSDDARYVTGTVVPVDAGQLNKR CCCEEEEEEECCCEEEEEEEEEECCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA