| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is fabG [H]
Identifier: 158316477
GI number: 158316477
Start: 5626970
End: 5627713
Strand: Reverse
Name: fabG [H]
Synonym: Franean1_4712
Alternate gene names: 158316477
Gene position: 5627713-5626970 (Counterclockwise)
Preceding gene: 158316478
Following gene: 158316476
Centisome position: 62.66
GC content: 71.64
Gene sequence:
>744_bases ATGGGCATCCTCGACGGCAAGGTCGCCGTGATCACGGGTGCGGGGCAGGGTATCGGCAAGGCCTCGGCGGCGGTGTTCGT GCGCGAGGGCGCCAGGGTGCTCGCCGCGGACATCAGCGGGGAGGAGAAGGCGACCGCGGCCGACCTCGGGCCGGCGGTGG TGCCCTTCCACGTCGACCTCCGTCAGGAGGTCGAGATCGCCGCCATGATCGACGCCGCGGTGGCAGAGTTCGGCCGGGTG GATGCCTTGGTGAACGTGGCCGGCACGCCCGCGGGCCGGTCGCCGGAGTTCCTCAGCGCCGAGGAGTACGAGGTGCAGAC CGCCGTGAACCTGCGTGGCGTGCTCCTGTGTACCAAGTATGCGATTCGGGCGATGCTCGAGACCGGGGGCGGTTCGATCG TCAGCGTGTCGTCGGTGGCCGGGCTCAACGTCGAGGAGCGGTCGCCGGTGCCGTATCAGACGGCGAAGGCCGGCGTTCAT GCCCTTACCAAGGCGGTCGCGGTCGAGTACGGGCCACGGGGTATCCGGGCCAACGTGATCGCGCCGGGGTTCACGCTCAC GGAGAAGAACCGGGAGGCGCCGGCGGACGCGATGCGCTCTCTGTGCGCGAAGGCGGCGCTCGGCCGGGCGGGGGAGGCGC GCGAGCAGGCCGAGGTGACGGCGTTCCTCGCCTCCGACCGCGCCTCGTTCGTCACCGGGGTGATCATCGCGGTCGACGGC GGCTGGTCGGCGCGCCTTGCCTGA
Upstream 100 bases:
>100_bases TCACCCAGGCCGGCATCTACGACGGTGGGTCGGGGTGGCACAACGCCATGAACGTCGCCCGGCACGTCTTCCTCCAGCAC GGCATCGTCGAAGGTGACTG
Downstream 100 bases:
>100_bases CGACCGCGACCCGGCGGCTGCGTGCATCCACCTACCAGCACGGGATGATCGACAACCGGTGCGACGGCGGGACTCCCGTG TCGCTGGCCCTGATCCCCTG
Product: short-chain dehydrogenase/reductase SDR
Products: NA
Alternate protein names: 3-ketoacyl-acyl carrier protein reductase [H]
Number of amino acids: Translated: 247; Mature: 246
Protein sequence:
>247_residues MGILDGKVAVITGAGQGIGKASAAVFVREGARVLAADISGEEKATAADLGPAVVPFHVDLRQEVEIAAMIDAAVAEFGRV DALVNVAGTPAGRSPEFLSAEEYEVQTAVNLRGVLLCTKYAIRAMLETGGGSIVSVSSVAGLNVEERSPVPYQTAKAGVH ALTKAVAVEYGPRGIRANVIAPGFTLTEKNREAPADAMRSLCAKAALGRAGEAREQAEVTAFLASDRASFVTGVIIAVDG GWSARLA
Sequences:
>Translated_247_residues MGILDGKVAVITGAGQGIGKASAAVFVREGARVLAADISGEEKATAADLGPAVVPFHVDLRQEVEIAAMIDAAVAEFGRV DALVNVAGTPAGRSPEFLSAEEYEVQTAVNLRGVLLCTKYAIRAMLETGGGSIVSVSSVAGLNVEERSPVPYQTAKAGVH ALTKAVAVEYGPRGIRANVIAPGFTLTEKNREAPADAMRSLCAKAALGRAGEAREQAEVTAFLASDRASFVTGVIIAVDG GWSARLA >Mature_246_residues GILDGKVAVITGAGQGIGKASAAVFVREGARVLAADISGEEKATAADLGPAVVPFHVDLRQEVEIAAMIDAAVAEFGRVD ALVNVAGTPAGRSPEFLSAEEYEVQTAVNLRGVLLCTKYAIRAMLETGGGSIVSVSSVAGLNVEERSPVPYQTAKAGVHA LTKAVAVEYGPRGIRANVIAPGFTLTEKNREAPADAMRSLCAKAALGRAGEAREQAEVTAFLASDRASFVTGVIIAVDGG WSARLA
Specific function: Unknown
COG id: COG1028
COG function: function code IQR; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI40254992, Length=239, Percent_Identity=33.8912133891213, Blast_Score=118, Evalue=4e-27, Organism=Homo sapiens, GI66933014, Length=249, Percent_Identity=34.9397590361446, Blast_Score=116, Evalue=2e-26, Organism=Homo sapiens, GI10190704, Length=253, Percent_Identity=33.9920948616601, Blast_Score=114, Evalue=7e-26, Organism=Homo sapiens, GI19923817, Length=255, Percent_Identity=32.156862745098, Blast_Score=112, Evalue=3e-25, Organism=Homo sapiens, GI15277342, Length=254, Percent_Identity=31.1023622047244, Blast_Score=103, Evalue=1e-22, Organism=Homo sapiens, GI59889578, Length=223, Percent_Identity=32.7354260089686, Blast_Score=99, Evalue=3e-21, Organism=Homo sapiens, GI32483357, Length=254, Percent_Identity=32.6771653543307, Blast_Score=97, Evalue=1e-20, Organism=Homo sapiens, GI7705925, Length=245, Percent_Identity=28.9795918367347, Blast_Score=91, Evalue=1e-18, Organism=Homo sapiens, GI4504505, Length=193, Percent_Identity=33.160621761658, Blast_Score=80, Evalue=1e-15, Organism=Homo sapiens, GI5031737, Length=258, Percent_Identity=30.2325581395349, Blast_Score=80, Evalue=1e-15, Organism=Homo sapiens, GI126723750, Length=260, Percent_Identity=28.4615384615385, Blast_Score=77, Evalue=1e-14, Organism=Homo sapiens, GI31542939, Length=195, Percent_Identity=31.7948717948718, Blast_Score=77, Evalue=2e-14, Organism=Homo sapiens, GI4503301, Length=250, Percent_Identity=31.2, Blast_Score=72, Evalue=3e-13, Organism=Homo sapiens, GI209862901, Length=204, Percent_Identity=31.8627450980392, Blast_Score=72, Evalue=6e-13, Organism=Homo sapiens, GI19923983, Length=204, Percent_Identity=31.8627450980392, Blast_Score=72, Evalue=6e-13, Organism=Homo sapiens, GI210032110, Length=218, Percent_Identity=30.2752293577982, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI4758504, Length=252, Percent_Identity=29.3650793650794, Blast_Score=69, Evalue=5e-12, Organism=Homo sapiens, GI109715829, Length=219, Percent_Identity=29.6803652968037, Blast_Score=66, Evalue=2e-11, Organism=Homo sapiens, GI224922801, Length=173, Percent_Identity=30.635838150289, Blast_Score=65, Evalue=4e-11, Organism=Escherichia coli, GI87082100, Length=252, Percent_Identity=36.5079365079365, Blast_Score=134, Evalue=7e-33, Organism=Escherichia coli, GI1787335, Length=239, Percent_Identity=34.7280334728033, Blast_Score=124, Evalue=8e-30, Organism=Escherichia coli, GI1789208, Length=249, Percent_Identity=33.3333333333333, Blast_Score=121, Evalue=4e-29, Organism=Escherichia coli, GI1787905, Length=244, Percent_Identity=32.3770491803279, Blast_Score=105, Evalue=3e-24, Organism=Escherichia coli, GI1790717, Length=250, Percent_Identity=30.4, Blast_Score=102, Evalue=2e-23, Organism=Escherichia coli, GI2367175, Length=248, Percent_Identity=31.8548387096774, Blast_Score=95, Evalue=4e-21, Organism=Escherichia coli, GI1786812, Length=248, Percent_Identity=31.8548387096774, Blast_Score=94, Evalue=8e-21, Organism=Escherichia coli, GI1788459, Length=246, Percent_Identity=31.3008130081301, Blast_Score=94, Evalue=8e-21, Organism=Escherichia coli, GI87082160, Length=248, Percent_Identity=29.0322580645161, Blast_Score=87, Evalue=1e-18, Organism=Escherichia coli, GI2367365, Length=252, Percent_Identity=32.5396825396825, Blast_Score=82, Evalue=4e-17, Organism=Escherichia coli, GI1789378, Length=252, Percent_Identity=28.5714285714286, Blast_Score=81, Evalue=8e-17, Organism=Escherichia coli, GI1789057, Length=254, Percent_Identity=27.1653543307087, Blast_Score=70, Evalue=1e-13, Organism=Escherichia coli, GI1787820, Length=165, Percent_Identity=28.4848484848485, Blast_Score=65, Evalue=5e-12, Organism=Caenorhabditis elegans, GI71994604, Length=256, Percent_Identity=33.984375, Blast_Score=117, Evalue=8e-27, Organism=Caenorhabditis elegans, GI25147288, Length=246, Percent_Identity=32.9268292682927, Blast_Score=111, Evalue=3e-25, Organism=Caenorhabditis elegans, GI71994600, Length=259, Percent_Identity=32.4324324324324, Blast_Score=111, Evalue=4e-25, Organism=Caenorhabditis elegans, GI17555706, Length=242, Percent_Identity=31.8181818181818, Blast_Score=105, Evalue=2e-23, Organism=Caenorhabditis elegans, GI17559104, Length=259, Percent_Identity=32.8185328185328, Blast_Score=99, Evalue=1e-21, Organism=Caenorhabditis elegans, GI17536025, Length=256, Percent_Identity=32.421875, Blast_Score=98, Evalue=4e-21, Organism=Caenorhabditis elegans, GI17536651, Length=254, Percent_Identity=32.2834645669291, Blast_Score=97, Evalue=7e-21, Organism=Caenorhabditis elegans, GI17560332, Length=269, Percent_Identity=32.7137546468402, Blast_Score=91, Evalue=6e-19, Organism=Caenorhabditis elegans, GI17544670, Length=265, Percent_Identity=28.3018867924528, Blast_Score=91, Evalue=6e-19, Organism=Caenorhabditis elegans, GI17562910, Length=276, Percent_Identity=30.0724637681159, Blast_Score=91, Evalue=6e-19, Organism=Caenorhabditis elegans, GI17565030, Length=260, Percent_Identity=31.5384615384615, Blast_Score=90, Evalue=9e-19, Organism=Caenorhabditis elegans, GI17561272, Length=257, Percent_Identity=33.852140077821, Blast_Score=90, Evalue=1e-18, Organism=Caenorhabditis elegans, GI193204405, Length=265, Percent_Identity=30.188679245283, Blast_Score=89, Evalue=2e-18, Organism=Caenorhabditis elegans, GI17538480, Length=265, Percent_Identity=30.9433962264151, Blast_Score=89, Evalue=2e-18, Organism=Caenorhabditis elegans, GI115534694, Length=245, Percent_Identity=29.3877551020408, Blast_Score=88, Evalue=4e-18, Organism=Caenorhabditis elegans, GI17531453, Length=261, Percent_Identity=27.9693486590038, Blast_Score=86, Evalue=2e-17, Organism=Caenorhabditis elegans, GI17562990, Length=263, Percent_Identity=30.0380228136882, Blast_Score=84, Evalue=5e-17, Organism=Caenorhabditis elegans, GI17562906, Length=264, Percent_Identity=28.7878787878788, Blast_Score=84, Evalue=7e-17, Organism=Caenorhabditis elegans, GI17560676, Length=257, Percent_Identity=29.5719844357977, Blast_Score=84, Evalue=8e-17, Organism=Caenorhabditis elegans, GI17551412, Length=260, Percent_Identity=31.1538461538462, Blast_Score=83, Evalue=1e-16, Organism=Caenorhabditis elegans, GI72000259, Length=266, Percent_Identity=30.4511278195489, Blast_Score=83, Evalue=1e-16, Organism=Caenorhabditis elegans, GI17562908, Length=262, Percent_Identity=29.7709923664122, Blast_Score=83, Evalue=1e-16, Organism=Caenorhabditis elegans, GI17560150, Length=267, Percent_Identity=29.5880149812734, Blast_Score=81, Evalue=6e-16, Organism=Caenorhabditis elegans, GI17538486, Length=269, Percent_Identity=28.6245353159851, Blast_Score=80, Evalue=9e-16, Organism=Caenorhabditis elegans, GI17563726, Length=261, Percent_Identity=29.1187739463602, Blast_Score=80, Evalue=1e-15, Organism=Caenorhabditis elegans, GI17562904, Length=261, Percent_Identity=28.735632183908, Blast_Score=79, Evalue=2e-15, Organism=Caenorhabditis elegans, GI17561402, Length=259, Percent_Identity=29.7297297297297, Blast_Score=79, Evalue=3e-15, Organism=Caenorhabditis elegans, GI17560220, Length=268, Percent_Identity=28.7313432835821, Blast_Score=78, Evalue=4e-15, Organism=Caenorhabditis elegans, GI193203115, Length=189, Percent_Identity=31.2169312169312, Blast_Score=71, Evalue=4e-13, Organism=Caenorhabditis elegans, GI193203117, Length=189, Percent_Identity=31.2169312169312, Blast_Score=71, Evalue=6e-13, Organism=Caenorhabditis elegans, GI71982365, Length=191, Percent_Identity=27.7486910994764, Blast_Score=70, Evalue=7e-13, Organism=Caenorhabditis elegans, GI17568967, Length=204, Percent_Identity=30.3921568627451, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI17558628, Length=193, Percent_Identity=29.0155440414508, Blast_Score=66, Evalue=1e-11, Organism=Caenorhabditis elegans, GI17564282, Length=191, Percent_Identity=28.7958115183246, Blast_Score=66, Evalue=2e-11, Organism=Saccharomyces cerevisiae, GI6324126, Length=257, Percent_Identity=31.9066147859922, Blast_Score=88, Evalue=1e-18, Organism=Saccharomyces cerevisiae, GI6322861, Length=189, Percent_Identity=31.7460317460317, Blast_Score=70, Evalue=3e-13, Organism=Drosophila melanogaster, GI23397609, Length=249, Percent_Identity=35.7429718875502, Blast_Score=128, Evalue=4e-30, Organism=Drosophila melanogaster, GI28571526, Length=256, Percent_Identity=35.546875, Blast_Score=123, Evalue=9e-29, Organism=Drosophila melanogaster, GI21357041, Length=253, Percent_Identity=35.1778656126482, Blast_Score=119, Evalue=2e-27, Organism=Drosophila melanogaster, GI24644339, Length=256, Percent_Identity=36.71875, Blast_Score=117, Evalue=9e-27, Organism=Drosophila melanogaster, GI24639444, Length=247, Percent_Identity=33.6032388663968, Blast_Score=115, Evalue=4e-26, Organism=Drosophila melanogaster, GI24643142, Length=246, Percent_Identity=32.520325203252, Blast_Score=104, Evalue=5e-23, Organism=Drosophila melanogaster, GI18859837, Length=192, Percent_Identity=34.375, Blast_Score=89, Evalue=2e-18, Organism=Drosophila melanogaster, GI21355319, Length=253, Percent_Identity=30.8300395256917, Blast_Score=89, Evalue=3e-18, Organism=Drosophila melanogaster, GI24644337, Length=194, Percent_Identity=36.5979381443299, Blast_Score=83, Evalue=1e-16, Organism=Drosophila melanogaster, GI21357673, Length=193, Percent_Identity=27.979274611399, Blast_Score=73, Evalue=2e-13, Organism=Drosophila melanogaster, GI17737361, Length=253, Percent_Identity=28.0632411067194, Blast_Score=72, Evalue=4e-13, Organism=Drosophila melanogaster, GI21358495, Length=195, Percent_Identity=29.2307692307692, Blast_Score=70, Evalue=1e-12, Organism=Drosophila melanogaster, GI281364892, Length=192, Percent_Identity=31.7708333333333, Blast_Score=68, Evalue=5e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011284 - InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: =1.1.1.100 [H]
Molecular weight: Translated: 25317; Mature: 25186
Theoretical pI: Translated: 5.14; Mature: 5.14
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGILDGKVAVITGAGQGIGKASAAVFVREGARVLAADISGEEKATAADLGPAVVPFHVDL CCCCCCEEEEEEECCCCCCCHHHEEEEECCCEEEEEECCCCCCCCHHHCCCEEEEEEECC RQEVEIAAMIDAAVAEFGRVDALVNVAGTPAGRSPEFLSAEEYEVQTAVNLRGVLLCTKY CHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCCCCCCEEEEEHHCHHHHHHHHHH AIRAMLETGGGSIVSVSSVAGLNVEERSPVPYQTAKAGVHALTKAVAVEYGPRGIRANVI HHHHHHHCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEE APGFTLTEKNREAPADAMRSLCAKAALGRAGEAREQAEVTAFLASDRASFVTGVIIAVDG CCCEEEECCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHEEEEEEEEEEC GWSARLA CCCCCCC >Mature Secondary Structure GILDGKVAVITGAGQGIGKASAAVFVREGARVLAADISGEEKATAADLGPAVVPFHVDL CCCCCEEEEEEECCCCCCCHHHEEEEECCCEEEEEECCCCCCCCHHHCCCEEEEEEECC RQEVEIAAMIDAAVAEFGRVDALVNVAGTPAGRSPEFLSAEEYEVQTAVNLRGVLLCTKY CHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCCCCCCEEEEEHHCHHHHHHHHHH AIRAMLETGGGSIVSVSSVAGLNVEERSPVPYQTAKAGVHALTKAVAVEYGPRGIRANVI HHHHHHHCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEE APGFTLTEKNREAPADAMRSLCAKAALGRAGEAREQAEVTAFLASDRASFVTGVIIAVDG CCCEEEECCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHEEEEEEEEEEC GWSARLA CCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 10360571 [H]