| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is 158316440
Identifier: 158316440
GI number: 158316440
Start: 5583879
End: 5584835
Strand: Reverse
Name: 158316440
Synonym: Franean1_4675
Alternate gene names: NA
Gene position: 5584835-5583879 (Counterclockwise)
Preceding gene: 158316441
Following gene: 158316439
Centisome position: 62.18
GC content: 73.98
Gene sequence:
>957_bases GTGGCCGCCGACCGCCCCGGGCAGATCACCGACCCGGTGGCCTTCCATGGCGAAGGCCCGGTCTGGAGCCCCGACTGGGG CGGCCTGCGCTGCGTCGACCTGCTGGCCGGTGACGTCCTCGCCGTCGACACCACGAGCGGCGCGGTCCGCCGCGACCATG TCGGCGCCGTGGCTGCGGCGCTGCGACCACGAGCCGCGGGTGGGACGGTGCTCGCACTGGAACGCGGCTTCGCGCTCATC GACCCCGCCGACCCGGACGGCCCCACCGACCCCGCCGGCTCGGACGGCCAGGCCGGCCCGGAAGACTCTGCTGGCTCTGA AGACCCTGCCGGCCTCACCGCCGGCGTCCGCCGGTACCTCGGGGATCTGTGGGACGCCGACGCGGGGGTCCGGATGAACG ACGGCGGCTGTGACCCGGACGGCCGCTTCTACTGCGGATCCATGGCCTACGCCGAGACGGCCGGCGCCGGTTCGCTCTAC CGGCTCGCACCCGACGGCACCGTCAGCGTCGTGCTGACCGGCGTCACCGTCTCCAACGGGCTGGCCTGGAGCCCCGACGG CGCGAGGGCGTACTACGTCGACTCGCCGACGTCACGGGTGGACGTCTTCGACTACGACTCGGAACGGGGACTGAGTAACC GTCGGACCCTGCTCACCGTCTCTGCCGACGGGGGCGCGCCTGACGGGCTCACCGTCGACGCCGACGGCTACCTGTGGGTG GCGCTGTGGGGCGGCGGCGCGGTCCGCCGCTACTCACCCGCCGGCCGGCTCGACGGGATCGTCCCGCTGCCCGTGCCCAG GGTGACGGCGTGCACCTTCGGCGGCGACCGCCTCGACACGCTCTACATCACCACCTCCCAGGTCGGCACCGATCTCACCC GGTATCCGGCGGCGGGTGCTGTGTTCGCCCTCGCCCCGGGAGTCCGTGGCCAGCCGGTGCAACCGTTCACGGGCTAG
Upstream 100 bases:
>100_bases GCCCGTCACGTACCAGTCGCTGCCCGAGCGCCTGCTGCCCGAGCCGCTGCGTGACGGCAATCCCTGGGGGATCCCCCAGG ACCGCCACGGCGGCTGACCG
Downstream 100 bases:
>100_bases ATCCGCGTGACTCGCTTCCGCTCTGGTGTCCCGCGGAACACTCGATCAGGGCACGGCACATCGCAGCTGATCAATCTCCG TGCAACGGGCTGTTAGTCTG
Product: SMP-30/gluconolaconase/LRE domain-containing protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 318; Mature: 317
Protein sequence:
>318_residues MAADRPGQITDPVAFHGEGPVWSPDWGGLRCVDLLAGDVLAVDTTSGAVRRDHVGAVAAALRPRAAGGTVLALERGFALI DPADPDGPTDPAGSDGQAGPEDSAGSEDPAGLTAGVRRYLGDLWDADAGVRMNDGGCDPDGRFYCGSMAYAETAGAGSLY RLAPDGTVSVVLTGVTVSNGLAWSPDGARAYYVDSPTSRVDVFDYDSERGLSNRRTLLTVSADGGAPDGLTVDADGYLWV ALWGGGAVRRYSPAGRLDGIVPLPVPRVTACTFGGDRLDTLYITTSQVGTDLTRYPAAGAVFALAPGVRGQPVQPFTG
Sequences:
>Translated_318_residues MAADRPGQITDPVAFHGEGPVWSPDWGGLRCVDLLAGDVLAVDTTSGAVRRDHVGAVAAALRPRAAGGTVLALERGFALI DPADPDGPTDPAGSDGQAGPEDSAGSEDPAGLTAGVRRYLGDLWDADAGVRMNDGGCDPDGRFYCGSMAYAETAGAGSLY RLAPDGTVSVVLTGVTVSNGLAWSPDGARAYYVDSPTSRVDVFDYDSERGLSNRRTLLTVSADGGAPDGLTVDADGYLWV ALWGGGAVRRYSPAGRLDGIVPLPVPRVTACTFGGDRLDTLYITTSQVGTDLTRYPAAGAVFALAPGVRGQPVQPFTG >Mature_317_residues AADRPGQITDPVAFHGEGPVWSPDWGGLRCVDLLAGDVLAVDTTSGAVRRDHVGAVAAALRPRAAGGTVLALERGFALID PADPDGPTDPAGSDGQAGPEDSAGSEDPAGLTAGVRRYLGDLWDADAGVRMNDGGCDPDGRFYCGSMAYAETAGAGSLYR LAPDGTVSVVLTGVTVSNGLAWSPDGARAYYVDSPTSRVDVFDYDSERGLSNRRTLLTVSADGGAPDGLTVDADGYLWVA LWGGGAVRRYSPAGRLDGIVPLPVPRVTACTFGGDRLDTLYITTSQVGTDLTRYPAAGAVFALAPGVRGQPVQPFTG
Specific function: Unknown
COG id: COG3386
COG function: function code G; Gluconolactonase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the SMP-30/CGR1 family [H]
Homologues:
Organism=Homo sapiens, GI23111021, Length=314, Percent_Identity=34.7133757961783, Blast_Score=152, Evalue=4e-37, Organism=Homo sapiens, GI4759036, Length=314, Percent_Identity=34.7133757961783, Blast_Score=152, Evalue=4e-37, Organism=Drosophila melanogaster, GI24641471, Length=282, Percent_Identity=31.5602836879433, Blast_Score=118, Evalue=4e-27, Organism=Drosophila melanogaster, GI18860103, Length=282, Percent_Identity=31.5602836879433, Blast_Score=118, Evalue=4e-27, Organism=Drosophila melanogaster, GI24641469, Length=282, Percent_Identity=31.5602836879433, Blast_Score=118, Evalue=4e-27, Organism=Drosophila melanogaster, GI45551448, Length=282, Percent_Identity=31.5602836879433, Blast_Score=118, Evalue=5e-27, Organism=Drosophila melanogaster, GI24646912, Length=288, Percent_Identity=29.8611111111111, Blast_Score=110, Evalue=2e-24, Organism=Drosophila melanogaster, GI24646910, Length=288, Percent_Identity=29.8611111111111, Blast_Score=110, Evalue=2e-24,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011042 - InterPro: IPR013658 - InterPro: IPR005511 [H]
Pfam domain/function: PF08450 SGL [H]
EC number: NA
Molecular weight: Translated: 32644; Mature: 32513
Theoretical pI: Translated: 4.21; Mature: 4.21
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAADRPGQITDPVAFHGEGPVWSPDWGGLRCVDLLAGDVLAVDTTSGAVRRDHVGAVAAA CCCCCCCCCCCCEEECCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCCCHHHHHHHHHH LRPRAAGGTVLALERGFALIDPADPDGPTDPAGSDGQAGPEDSAGSEDPAGLTAGVRRYL HCCCCCCCEEEEEECCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH GDLWDADAGVRMNDGGCDPDGRFYCGSMAYAETAGAGSLYRLAPDGTVSVVLTGVTVSNG HHHHCCCCCCEECCCCCCCCCCEEECCEEEHHCCCCCCEEEECCCCEEEEEEEEEEECCC LAWSPDGARAYYVDSPTSRVDVFDYDSERGLSNRRTLLTVSADGGAPDGLTVDADGYLWV EEECCCCCEEEEECCCCCEEEEEECCCCCCCCCCEEEEEEECCCCCCCCEEECCCCEEEE ALWGGGAVRRYSPAGRLDGIVPLPVPRVTACTFGGDRLDTLYITTSQVGTDLTRYPAAGA EEECCCCEEECCCCCCCCCEECCCCCCEEEEECCCCCEEEEEEECHHHCCCHHHCCCCCE VFALAPGVRGQPVQPFTG EEEECCCCCCCCCCCCCC >Mature Secondary Structure AADRPGQITDPVAFHGEGPVWSPDWGGLRCVDLLAGDVLAVDTTSGAVRRDHVGAVAAA CCCCCCCCCCCEEECCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCCCHHHHHHHHHH LRPRAAGGTVLALERGFALIDPADPDGPTDPAGSDGQAGPEDSAGSEDPAGLTAGVRRYL HCCCCCCCEEEEEECCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH GDLWDADAGVRMNDGGCDPDGRFYCGSMAYAETAGAGSLYRLAPDGTVSVVLTGVTVSNG HHHHCCCCCCEECCCCCCCCCCEEECCEEEHHCCCCCCEEEECCCCEEEEEEEEEEECCC LAWSPDGARAYYVDSPTSRVDVFDYDSERGLSNRRTLLTVSADGGAPDGLTVDADGYLWV EEECCCCCEEEEECCCCCEEEEEECCCCCCCCCCEEEEEEECCCCCCCCEEECCCCEEEE ALWGGGAVRRYSPAGRLDGIVPLPVPRVTACTFGGDRLDTLYITTSQVGTDLTRYPAAGA EEECCCCEEECCCCCCCCCEECCCCCCEEEEECCCCCEEEEEEECHHHCCCHHHCCCCCE VFALAPGVRGQPVQPFTG EEEECCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA