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The map label for this gene is agaR [H]

Identifier: 158316439

GI number: 158316439

Start: 5582964

End: 5583731

Strand: Reverse

Name: agaR [H]

Synonym: Franean1_4674

Alternate gene names: 158316439

Gene position: 5583731-5582964 (Counterclockwise)

Preceding gene: 158316440

Following gene: 158316438

Centisome position: 62.17

GC content: 74.61

Gene sequence:

>768_bases
GTGCCTGTGTCACTGCCCCTGCGGAATGGTCCCGGAGAGGACCGCCTGACCTGGCTGAGCGACCAGCTCAGGGATCAGGG
GGCGGTCACCATCACCGCCGCGGCGGCGGCGCTCAACGTCAGCGAGATGACGATCCGGCGGGACCTGGCCCAGCTGGAGG
AACGCGGGGTGGCCCGCCGGGTGCGCGGCGGGGCGCGCTCCGTCGGCCCGCGCAGCTTCGCTCAGCGCCGGGACCGGATG
GCGGCGGCGAAGTCGCGCATCGCGGCGAAGCTCGCCGAGCTCGTCCCGGACGGGGGCGCGGTCGCGTTCGACGCGTCCTC
GACGGTCATGCGGCTCGCCGGCGCTCTGACCAGCGCGGACGATCTGCTCGTTGTCACGAACGGGCCCGACACGTTCGGCG
TGCTGCGGGACAGGCCAGGTATCTCGGTGCTGCTGACCGGCGGGCGGCTCGATCCCCGGACCGGCAGCCTGGTCGGCCCG
CTGGCGAGCCGGGCGGCGGCGGACATCACCGTGCGGCGGCTGTTCGCCTCGGCGGCGGCCCTCGACGAGCGGGCGGGTCC
GCTGGAGGAGACCCCGGAGGAGGCCGACGTCAAGCGCGCGCTGGCCGCCGGCGCCGAGCAGATCGTCCTAGCCGTCGACT
CCTCGAAAATCGGTACGCGAGCCGTCGCGCGCTGGCTCGACTGGGACCGCGTCGACTGGCTGGTGACCGAGCTCGACCCG
CAGGACGACCGGCTGGCGCCCTACCGGCGGGTGACGCGGCTCCTCTGA

Upstream 100 bases:

>100_bases
AGGGCACGGCACATCGCAGCTGATCAATCTCCGTGCAACGGGCTGTTAGTCTGACGTTGCTTCGAACACCGTTCTCACAC
GTAACGCCGCGTCCGGCGAG

Downstream 100 bases:

>100_bases
CGCGGCTCCGACGCCGCCGCGTCTGCCTGCGTGCGGCTGGGTGCCTCTCCTTCTCGGCTCACGACTGCCTTCTCGGTTCG
CGATTGCCGACCGTGCGAGA

Product: DeoR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 255; Mature: 254

Protein sequence:

>255_residues
MPVSLPLRNGPGEDRLTWLSDQLRDQGAVTITAAAAALNVSEMTIRRDLAQLEERGVARRVRGGARSVGPRSFAQRRDRM
AAAKSRIAAKLAELVPDGGAVAFDASSTVMRLAGALTSADDLLVVTNGPDTFGVLRDRPGISVLLTGGRLDPRTGSLVGP
LASRAAADITVRRLFASAAALDERAGPLEETPEEADVKRALAAGAEQIVLAVDSSKIGTRAVARWLDWDRVDWLVTELDP
QDDRLAPYRRVTRLL

Sequences:

>Translated_255_residues
MPVSLPLRNGPGEDRLTWLSDQLRDQGAVTITAAAAALNVSEMTIRRDLAQLEERGVARRVRGGARSVGPRSFAQRRDRM
AAAKSRIAAKLAELVPDGGAVAFDASSTVMRLAGALTSADDLLVVTNGPDTFGVLRDRPGISVLLTGGRLDPRTGSLVGP
LASRAAADITVRRLFASAAALDERAGPLEETPEEADVKRALAAGAEQIVLAVDSSKIGTRAVARWLDWDRVDWLVTELDP
QDDRLAPYRRVTRLL
>Mature_254_residues
PVSLPLRNGPGEDRLTWLSDQLRDQGAVTITAAAAALNVSEMTIRRDLAQLEERGVARRVRGGARSVGPRSFAQRRDRMA
AAKSRIAAKLAELVPDGGAVAFDASSTVMRLAGALTSADDLLVVTNGPDTFGVLRDRPGISVLLTGGRLDPRTGSLVGPL
ASRAAADITVRRLFASAAALDERAGPLEETPEEADVKRALAAGAEQIVLAVDSSKIGTRAVARWLDWDRVDWLVTELDPQ
DDRLAPYRRVTRLL

Specific function: Probable repressor for the aga operon for N-acetyl galactosamine transport and metabolism [H]

COG id: COG1349

COG function: function code KG; Transcriptional regulators of sugar metabolism

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH deoR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789519, Length=242, Percent_Identity=30.1652892561983, Blast_Score=107, Evalue=8e-25,
Organism=Escherichia coli, GI87082344, Length=238, Percent_Identity=30.672268907563, Blast_Score=103, Evalue=1e-23,
Organism=Escherichia coli, GI1788069, Length=234, Percent_Identity=29.0598290598291, Blast_Score=102, Evalue=3e-23,
Organism=Escherichia coli, GI226510968, Length=220, Percent_Identity=32.7272727272727, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI1789829, Length=229, Percent_Identity=27.9475982532751, Blast_Score=89, Evalue=2e-19,
Organism=Escherichia coli, GI1789059, Length=226, Percent_Identity=26.9911504424779, Blast_Score=85, Evalue=5e-18,
Organism=Escherichia coli, GI1787063, Length=248, Percent_Identity=28.2258064516129, Blast_Score=81, Evalue=6e-17,
Organism=Escherichia coli, GI1789170, Length=223, Percent_Identity=27.8026905829596, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1790635, Length=238, Percent_Identity=28.1512605042017, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1787540, Length=196, Percent_Identity=31.1224489795918, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014036
- InterPro:   IPR001034
- InterPro:   IPR018356
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00455 DeoR; PF08220 HTH_DeoR [H]

EC number: NA

Molecular weight: Translated: 27293; Mature: 27162

Theoretical pI: Translated: 9.97; Mature: 9.97

Prosite motif: PS00894 HTH_DEOR_1 ; PS51000 HTH_DEOR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPVSLPLRNGPGEDRLTWLSDQLRDQGAVTITAAAAALNVSEMTIRRDLAQLEERGVARR
CCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHH
VRGGARSVGPRSFAQRRDRMAAAKSRIAAKLAELVPDGGAVAFDASSTVMRLAGALTSAD
HCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHCCCC
DLLVVTNGPDTFGVLRDRPGISVLLTGGRLDPRTGSLVGPLASRAAADITVRRLFASAAA
CEEEEECCCCCCCCEECCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
LDERAGPLEETPEEADVKRALAAGAEQIVLAVDSSKIGTRAVARWLDWDRVDWLVTELDP
HHHCCCCCCCCCCHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCHHEEEECCCC
QDDRLAPYRRVTRLL
CCCCCCHHHHHHHCC
>Mature Secondary Structure 
PVSLPLRNGPGEDRLTWLSDQLRDQGAVTITAAAAALNVSEMTIRRDLAQLEERGVARR
CCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHH
VRGGARSVGPRSFAQRRDRMAAAKSRIAAKLAELVPDGGAVAFDASSTVMRLAGALTSAD
HCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHCCCC
DLLVVTNGPDTFGVLRDRPGISVLLTGGRLDPRTGSLVGPLASRAAADITVRRLFASAAA
CEEEEECCCCCCCCEECCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
LDERAGPLEETPEEADVKRALAAGAEQIVLAVDSSKIGTRAVARWLDWDRVDWLVTELDP
HHHCCCCCCCCCCHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCHHEEEECCCC
QDDRLAPYRRVTRLL
CCCCCCHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]