| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is gsiB [H]
Identifier: 158315357
GI number: 158315357
Start: 4223260
End: 4224840
Strand: Reverse
Name: gsiB [H]
Synonym: Franean1_3559
Alternate gene names: 158315357
Gene position: 4224840-4223260 (Counterclockwise)
Preceding gene: 158315359
Following gene: 158315356
Centisome position: 47.04
GC content: 72.93
Gene sequence:
>1581_bases ATGAACGTTGCTCTCAACCGTCGCGCGTTCGGGCGTGCCGGCCTGCTCGCCGTCGGCGCCCTCACGGCGCCGGCACTGCT CGCGGCCTGTGGCGACGACGCCCCCGCCGCACCAGGCGCGGGCACGGGCGCGGCGGGGGCGACAGCGGCCCCGCGCCGCG GCGGGAAACTGCGGGCCGCGTTCGCGAGCAGTCCGGCCGACACCCTGGACATCGTGAAAGGCCACGACGTGCTGGGCTCG GTGCGCGGCCTCGCGGTGTACGAACGCCTCGGCGACGCCCACCCGGACGGCTCGGTCTCCCCGCGCCTGTTCGAGAGCCT GACGCCCAACGCCGACGCGACCGTCTGGACGCTGAAGCTGAAGCCGGGGATCACCTTCTCCGATGGCAGGCCGTTGACGA CGGCCGACGTGCTGGCCAGCTTCGCGACGTTCACCGGCACCGAGAGCGGCGCCGCGATCGCCGCGTTCGACCCGAAGGAG AGCAAGGCGACGGACGCGCGCACCGCGACCATCGCGCTGACCGCCCCCGTGTACGACCTGCCGGCCCGGGTGAGCGGCGT CGTCCTGGTGATCATGCCGGAGGGCAAGCCGGCGTCTCAGCTCGGTGACGTCGTCGGCAGCGGGCCCTACGAGATCGCCT CGTTCGTGCCCGGCCAGCGGACGGTCCTGCGCAGGCGCACCGACTACTGGGACGGCGACGCCCGGGGCTACCTGGACGCG ATCGAGCTGGTGGCCGCGCCGGACGCGAAGTCGCGGCTGTCCGCGCTGCGGGCGGGCCAGGTGGACTGGGCCGACGACAT CGCCTACCTGGACGCCTCGACCCTGCGGGAGGACCGCGCGATCACGATCCACCGCGGCGCGGCCGAGCAGGGCCTGGCCT GGTTCCTGAACATGGCGGCGCCGCCGTTCGACGACGAGCGCGTCCGGCAGGCCCTGCGGTACTCGGTGGACCGCCAGAAG CTCGTCGACACCACGCTGTTCGGATTCGGCTCCGTCGGCAACGACCTGTGGGGCAAGGGCCTGCCGAACTACAACGGCTC GATCCCGCAGCGGCCGCACGACCCCGCGAAGGCGAAATCGCTCCTGCAGGAGGCCGGGGTGGCCACCCCGGCCAAGGCCA CCCTGCTGACCTCGCCCATCGGCCCGGGTCTCGTCGAGGCGACCCAGCTCCTCGCCGACCAGGCCCGCGAGGTCGGCTTC GACATCAAGGTCGAGGTCATCCCGCCGGACGTCTACTTCGCCCGGCCCGAGGAGTGGGCGAAGGCGTCGGGCGTGGCGTT CGCCCAGGTCGGCGCGTTCACCGACATGGCCCCGCTGGTCTACCTGTCCGACGGCCCGTTCAACTTCGGCTGGCGCAAGC CCGACTGGGACGCCGGGTTCGCCGACGGAGTGGGCGAGCTCGACGCCGCGAAGCGCAAAGCGACGTTCGACGGCCTGCAG CAGCAGCTCTGGGATTCCGGCTCCGACCTCGTGTGGGGGTTCGCGCCGAGGCTCGTCGCCGCCGCGCCGTCCGTCGGGGG CGTCGACTCCAGTCCCAACTTCGGCATCCCGGACCTGGTCTTCATCCACCGCACGGGGTGA
Upstream 100 bases:
>100_bases CAGATACAACTAAGGACTTCCTTAAGCGAATGGTCTATGCATAAGGTGACCCTTAGCTGCCCGCTGGTTGGGCGGCACGG GCCCCCGGGAGAAGACCTCG
Downstream 100 bases:
>100_bases GCACTCCGCCGGCCGGGTCGCGAGCGGTGGCCGGCCGCGTGCCGTCGCCCGTCCGGCGGCTGGCCGGGGCCTTCGCCGTC GTCCTCGGGGTGTCCGTCGT
Product: extracellular solute-binding protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 526; Mature: 526
Protein sequence:
>526_residues MNVALNRRAFGRAGLLAVGALTAPALLAACGDDAPAAPGAGTGAAGATAAPRRGGKLRAAFASSPADTLDIVKGHDVLGS VRGLAVYERLGDAHPDGSVSPRLFESLTPNADATVWTLKLKPGITFSDGRPLTTADVLASFATFTGTESGAAIAAFDPKE SKATDARTATIALTAPVYDLPARVSGVVLVIMPEGKPASQLGDVVGSGPYEIASFVPGQRTVLRRRTDYWDGDARGYLDA IELVAAPDAKSRLSALRAGQVDWADDIAYLDASTLREDRAITIHRGAAEQGLAWFLNMAAPPFDDERVRQALRYSVDRQK LVDTTLFGFGSVGNDLWGKGLPNYNGSIPQRPHDPAKAKSLLQEAGVATPAKATLLTSPIGPGLVEATQLLADQAREVGF DIKVEVIPPDVYFARPEEWAKASGVAFAQVGAFTDMAPLVYLSDGPFNFGWRKPDWDAGFADGVGELDAAKRKATFDGLQ QQLWDSGSDLVWGFAPRLVAAAPSVGGVDSSPNFGIPDLVFIHRTG
Sequences:
>Translated_526_residues MNVALNRRAFGRAGLLAVGALTAPALLAACGDDAPAAPGAGTGAAGATAAPRRGGKLRAAFASSPADTLDIVKGHDVLGS VRGLAVYERLGDAHPDGSVSPRLFESLTPNADATVWTLKLKPGITFSDGRPLTTADVLASFATFTGTESGAAIAAFDPKE SKATDARTATIALTAPVYDLPARVSGVVLVIMPEGKPASQLGDVVGSGPYEIASFVPGQRTVLRRRTDYWDGDARGYLDA IELVAAPDAKSRLSALRAGQVDWADDIAYLDASTLREDRAITIHRGAAEQGLAWFLNMAAPPFDDERVRQALRYSVDRQK LVDTTLFGFGSVGNDLWGKGLPNYNGSIPQRPHDPAKAKSLLQEAGVATPAKATLLTSPIGPGLVEATQLLADQAREVGF DIKVEVIPPDVYFARPEEWAKASGVAFAQVGAFTDMAPLVYLSDGPFNFGWRKPDWDAGFADGVGELDAAKRKATFDGLQ QQLWDSGSDLVWGFAPRLVAAAPSVGGVDSSPNFGIPDLVFIHRTG >Mature_526_residues MNVALNRRAFGRAGLLAVGALTAPALLAACGDDAPAAPGAGTGAAGATAAPRRGGKLRAAFASSPADTLDIVKGHDVLGS VRGLAVYERLGDAHPDGSVSPRLFESLTPNADATVWTLKLKPGITFSDGRPLTTADVLASFATFTGTESGAAIAAFDPKE SKATDARTATIALTAPVYDLPARVSGVVLVIMPEGKPASQLGDVVGSGPYEIASFVPGQRTVLRRRTDYWDGDARGYLDA IELVAAPDAKSRLSALRAGQVDWADDIAYLDASTLREDRAITIHRGAAEQGLAWFLNMAAPPFDDERVRQALRYSVDRQK LVDTTLFGFGSVGNDLWGKGLPNYNGSIPQRPHDPAKAKSLLQEAGVATPAKATLLTSPIGPGLVEATQLLADQAREVGF DIKVEVIPPDVYFARPEEWAKASGVAFAQVGAFTDMAPLVYLSDGPFNFGWRKPDWDAGFADGVGELDAAKRKATFDGLQ QQLWDSGSDLVWGFAPRLVAAAPSVGGVDSSPNFGIPDLVFIHRTG
Specific function: Part of the ABC transporter complex gsiABCD involved in glutathione import [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Periplasm (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the bacterial solute-binding protein 5 family [H]
Homologues:
Organism=Escherichia coli, GI1787052, Length=417, Percent_Identity=25.6594724220624, Blast_Score=102, Evalue=5e-23, Organism=Escherichia coli, GI1789887, Length=461, Percent_Identity=23.2104121475054, Blast_Score=93, Evalue=4e-20, Organism=Escherichia coli, GI1787495, Length=549, Percent_Identity=24.2258652094718, Blast_Score=86, Evalue=5e-18, Organism=Escherichia coli, GI1789966, Length=311, Percent_Identity=23.7942122186495, Blast_Score=82, Evalue=8e-17, Organism=Escherichia coli, GI1787762, Length=337, Percent_Identity=24.6290801186944, Blast_Score=74, Evalue=3e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000914 [H]
Pfam domain/function: PF00496 SBP_bac_5 [H]
EC number: NA
Molecular weight: Translated: 55219; Mature: 55219
Theoretical pI: Translated: 5.00; Mature: 5.00
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 1.0 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 1.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNVALNRRAFGRAGLLAVGALTAPALLAACGDDAPAAPGAGTGAAGATAAPRRGGKLRAA CCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE FASSPADTLDIVKGHDVLGSVRGLAVYERLGDAHPDGSVSPRLFESLTPNADATVWTLKL ECCCCCCHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCCCCCEEEEEEE KPGITFSDGRPLTTADVLASFATFTGTESGAAIAAFDPKESKATDARTATIALTAPVYDL CCCEEECCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCEEEEEEECCCHHC PARVSGVVLVIMPEGKPASQLGDVVGSGPYEIASFVPGQRTVLRRRTDYWDGDARGYLDA CCCCCCEEEEEEECCCCHHHHHHHHCCCCHHHHHCCCCHHHHHHHHCCCCCCCCCHHHHH IELVAAPDAKSRLSALRAGQVDWADDIAYLDASTLREDRAITIHRGAAEQGLAWFLNMAA HHHHCCCCHHHHHHHHHCCCCCCHHHHHHHCHHHHCCCCEEEEECCCCHHHHHHHHHCCC PPFDDERVRQALRYSVDRQKLVDTTLFGFGSVGNDLWGKGLPNYNGSIPQRPHDPAKAKS CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCCCCCCCCCCCCHHHHHH LLQEAGVATPAKATLLTSPIGPGLVEATQLLADQAREVGFDIKVEVIPPDVYFARPEEWA HHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCEEECCHHHH KASGVAFAQVGAFTDMAPLVYLSDGPFNFGWRKPDWDAGFADGVGELDAAKRKATFDGLQ HHCCCCHHHHCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH QQLWDSGSDLVWGFAPRLVAAAPSVGGVDSSPNFGIPDLVFIHRTG HHHHCCCCCEEEEHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECC >Mature Secondary Structure MNVALNRRAFGRAGLLAVGALTAPALLAACGDDAPAAPGAGTGAAGATAAPRRGGKLRAA CCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE FASSPADTLDIVKGHDVLGSVRGLAVYERLGDAHPDGSVSPRLFESLTPNADATVWTLKL ECCCCCCHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCCCCCEEEEEEE KPGITFSDGRPLTTADVLASFATFTGTESGAAIAAFDPKESKATDARTATIALTAPVYDL CCCEEECCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCEEEEEEECCCHHC PARVSGVVLVIMPEGKPASQLGDVVGSGPYEIASFVPGQRTVLRRRTDYWDGDARGYLDA CCCCCCEEEEEEECCCCHHHHHHHHCCCCHHHHHCCCCHHHHHHHHCCCCCCCCCHHHHH IELVAAPDAKSRLSALRAGQVDWADDIAYLDASTLREDRAITIHRGAAEQGLAWFLNMAA HHHHCCCCHHHHHHHHHCCCCCCHHHHHHHCHHHHCCCCEEEEECCCCHHHHHHHHHCCC PPFDDERVRQALRYSVDRQKLVDTTLFGFGSVGNDLWGKGLPNYNGSIPQRPHDPAKAKS CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCCCCCCCCCCCCHHHHHH LLQEAGVATPAKATLLTSPIGPGLVEATQLLADQAREVGFDIKVEVIPPDVYFARPEEWA HHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCEEECCHHHH KASGVAFAQVGAFTDMAPLVYLSDGPFNFGWRKPDWDAGFADGVGELDAAKRKATFDGLQ HHCCCCHHHHCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH QQLWDSGSDLVWGFAPRLVAAAPSVGGVDSSPNFGIPDLVFIHRTG HHHHCCCCCEEEEHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA