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The map label for this gene is oppB [C]

Identifier: 158315356

GI number: 158315356

Start: 4222277

End: 4223233

Strand: Reverse

Name: oppB [C]

Synonym: Franean1_3558

Alternate gene names: 158315356

Gene position: 4223233-4222277 (Counterclockwise)

Preceding gene: 158315357

Following gene: 158315355

Centisome position: 47.02

GC content: 73.25

Gene sequence:

>957_bases
GTGGCCGGCCGCGTGCCGTCGCCCGTCCGGCGGCTGGCCGGGGCCTTCGCCGTCGTCCTCGGGGTGTCCGTCGTGACCTT
CGCCGCGATGTCCGCGCTGCCCGGTGACAACGTGCGCGCCCGCCTGGGTCCCTACGCCACGGAACAGCAACTCCATGCGG
AGCATGTCCGGCTGGGACTCGACCACCCGGTCTGGGAGCGGTACCTGCGGTGGATCTCCGGGCTGGCGCACGGCGACCTG
GGCCGGTCCCAGGTGAACGACCTGCCGGTGGACACCCTGCTGTCGCGGCCGATGGTGAACAGCCTGACGCTGGCGGCCGT
CGCCCTGGCCGCGGTGCTGCTGACCGGCACGCTGGCCGGCGTGACCGCGGGCCTGCGGCCCGGCGGGGCCGTGGACCGGC
TGCTGCTCATGTTCTCGCTCACGGTGTCGGCCGTTCCGGCCTTCGTCACCGGTTCCCTGCTCGTGCTGCTGTTCGCCGTC
AACCTGCGTTGGCTGCCCGCGCTCGCGCTGGTCGATCCCACCCGCCCGGCCATCCTCCAGCCACGGCTGCTGGTGCTGCC
CGCGACCGCCCTGACGCTCAGCTCCTTCGCCTACGTGACGCGCCTGGTCCGCGCGAGCGTGCTCGACGCCGCCGCCATGC
CCTGGGCGCTCGCGGCCCGCCTGCGCGGCATCCCGCACCGGCGGGTCGTCGCCCGGCACATCCTCCCGGCGGCGCTGCCC
GTGCTGTGCCAGGCCGGGGCATTGACCATGATCGCGATGGTCACGAACGTCGTCGTCGTCGAGATAGTGTTCGGCTATCC
GGGGGTGGGCAACGTGCTGCAGACCGCCGTCTCGCAGCGGGACGTCCCGGTCATCCAGGCGGTGACGATCGTGGTGGCCG
CGTTCGTGGTAACGATGAGCGCCGTCGCCGACGGCGCCGTCCGGCTCCTGCTCCCCCGGACTCGGACAACCCTGTGA

Upstream 100 bases:

>100_bases
CGTCCGTCGGGGGCGTCGACTCCAGTCCCAACTTCGGCATCCCGGACCTGGTCTTCATCCACCGCACGGGGTGAGCACTC
CGCCGGCCGGGTCGCGAGCG

Downstream 100 bases:

>100_bases
GCGAGCCCTCCGCCGAACGTCAGCACTTCCGCGGGCGCACCGGGCTGGTGATCGGTCTCCTCGTCCTGGGCGTACCCGTG
CTGACGACCCTCGTCGGCAT

Product: binding-protein-dependent transport systems inner membrane component

Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 318; Mature: 317

Protein sequence:

>318_residues
MAGRVPSPVRRLAGAFAVVLGVSVVTFAAMSALPGDNVRARLGPYATEQQLHAEHVRLGLDHPVWERYLRWISGLAHGDL
GRSQVNDLPVDTLLSRPMVNSLTLAAVALAAVLLTGTLAGVTAGLRPGGAVDRLLLMFSLTVSAVPAFVTGSLLVLLFAV
NLRWLPALALVDPTRPAILQPRLLVLPATALTLSSFAYVTRLVRASVLDAAAMPWALAARLRGIPHRRVVARHILPAALP
VLCQAGALTMIAMVTNVVVVEIVFGYPGVGNVLQTAVSQRDVPVIQAVTIVVAAFVVTMSAVADGAVRLLLPRTRTTL

Sequences:

>Translated_318_residues
MAGRVPSPVRRLAGAFAVVLGVSVVTFAAMSALPGDNVRARLGPYATEQQLHAEHVRLGLDHPVWERYLRWISGLAHGDL
GRSQVNDLPVDTLLSRPMVNSLTLAAVALAAVLLTGTLAGVTAGLRPGGAVDRLLLMFSLTVSAVPAFVTGSLLVLLFAV
NLRWLPALALVDPTRPAILQPRLLVLPATALTLSSFAYVTRLVRASVLDAAAMPWALAARLRGIPHRRVVARHILPAALP
VLCQAGALTMIAMVTNVVVVEIVFGYPGVGNVLQTAVSQRDVPVIQAVTIVVAAFVVTMSAVADGAVRLLLPRTRTTL
>Mature_317_residues
AGRVPSPVRRLAGAFAVVLGVSVVTFAAMSALPGDNVRARLGPYATEQQLHAEHVRLGLDHPVWERYLRWISGLAHGDLG
RSQVNDLPVDTLLSRPMVNSLTLAAVALAAVLLTGTLAGVTAGLRPGGAVDRLLLMFSLTVSAVPAFVTGSLLVLLFAVN
LRWLPALALVDPTRPAILQPRLLVLPATALTLSSFAYVTRLVRASVLDAAAMPWALAARLRGIPHRRVVARHILPAALPV
LCQAGALTMIAMVTNVVVVEIVFGYPGVGNVLQTAVSQRDVPVIQAVTIVVAAFVVTMSAVADGAVRLLLPRTRTTL

Specific function: Probably part of the binding-protein-dependent transport system y4tOPQRS for a peptide. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0601

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787497, Length=314, Percent_Identity=28.6624203821656, Blast_Score=135, Evalue=3e-33,
Organism=Escherichia coli, GI1787053, Length=298, Percent_Identity=32.5503355704698, Blast_Score=129, Evalue=3e-31,
Organism=Escherichia coli, GI1789965, Length=332, Percent_Identity=28.3132530120482, Blast_Score=123, Evalue=2e-29,
Organism=Escherichia coli, GI1789888, Length=313, Percent_Identity=30.6709265175719, Blast_Score=114, Evalue=7e-27,
Organism=Escherichia coli, GI1787550, Length=264, Percent_Identity=27.2727272727273, Blast_Score=104, Evalue=9e-24,
Organism=Escherichia coli, GI1787761, Length=305, Percent_Identity=29.1803278688525, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI1788504, Length=267, Percent_Identity=24.7191011235955, Blast_Score=80, Evalue=2e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 33520; Mature: 33389

Theoretical pI: Translated: 11.98; Mature: 11.98

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAGRVPSPVRRLAGAFAVVLGVSVVTFAAMSALPGDNVRARLGPYATEQQLHAEHVRLGL
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCHHHHHHHHHHHHHCC
DHPVWERYLRWISGLAHGDLGRSQVNDLPVDTLLSRPMVNSLTLAAVALAAVLLTGTLAG
CCHHHHHHHHHHHHHHCCCCCHHHHCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
VTAGLRPGGAVDRLLLMFSLTVSAVPAFVTGSLLVLLFAVNLRWLPALALVDPTRPAILQ
HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHC
PRLLVLPATALTLSSFAYVTRLVRASVLDAAAMPWALAARLRGIPHRRVVARHILPAALP
CCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
VLCQAGALTMIAMVTNVVVVEIVFGYPGVGNVLQTAVSQRDVPVIQAVTIVVAAFVVTMS
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
AVADGAVRLLLPRTRTTL
HHHHCHHHEEECCHHCCC
>Mature Secondary Structure 
AGRVPSPVRRLAGAFAVVLGVSVVTFAAMSALPGDNVRARLGPYATEQQLHAEHVRLGL
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCHHHHHHHHHHHHHCC
DHPVWERYLRWISGLAHGDLGRSQVNDLPVDTLLSRPMVNSLTLAAVALAAVLLTGTLAG
CCHHHHHHHHHHHHHHCCCCCHHHHCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
VTAGLRPGGAVDRLLLMFSLTVSAVPAFVTGSLLVLLFAVNLRWLPALALVDPTRPAILQ
HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHC
PRLLVLPATALTLSSFAYVTRLVRASVLDAAAMPWALAARLRGIPHRRVVARHILPAALP
CCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
VLCQAGALTMIAMVTNVVVVEIVFGYPGVGNVLQTAVSQRDVPVIQAVTIVVAAFVVTMS
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
AVADGAVRLLLPRTRTTL
HHHHCHHHEEECCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; oligopeptides [Periplasm]; H2O [C]

Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9163424; 8796346 [H]