Click here to switch to the map view.

The map label for this gene is dppC [H]

Identifier: 158315355

GI number: 158315355

Start: 4221444

End: 4222280

Strand: Reverse

Name: dppC [H]

Synonym: Franean1_3557

Alternate gene names: 158315355

Gene position: 4222280-4221444 (Counterclockwise)

Preceding gene: 158315356

Following gene: 158315354

Centisome position: 47.01

GC content: 73.36

Gene sequence:

>837_bases
GTGAGCGAGCCCTCCGCCGAACGTCAGCACTTCCGCGGGCGCACCGGGCTGGTGATCGGTCTCCTCGTCCTGGGCGTACC
CGTGCTGACGACCCTCGTCGGCATCTTCGTCCACCCCTACCCGACGACCGCCAGCGTCTCCGGCCCGCTCACCGGGCCGA
GCGGGGCGCACCCGCTCGGAACCGACCTGCTGGGCCGGGACGTGCTCTCCCGCATGCTCGTCGGCGGCCGGAGCCTGCTG
CTCATCACGATCCTCGCGGTGGTCTCCGCCCAGCTGCTCGCCGTCACCGCGGGCCTGCTCGCGGGCTGGCTGGGCCGGGG
CGGCGCCCGGGCCGTGCTGGCGGTGTTCGACGTCATCCTGGCCGTCCCCGCGGTGCTGGTCCTGGCCGCGGCGGCGAGCG
CGCTGGGCGTGGGTGGTCTCGCCGCCTTCGCCGCGATCGTCGTCGTCCTCACGCCGCCCACCGCGCGGGTCGTCTACGCG
GCGACCCGCGCGCTCGTCACGGAGCCCTACGTCGAGGCGGCGGTCCTGTGCGGGACGCCGACCCGCCAGATCCTCAGCCG
CGACCTGCTCCCCAACCTCCGGACGATCATCGTCGCGGATGCCGGCACGCGGATGGTCGAGGCCGTCATCATCATCAGCG
CGGCTGGCTTCCTGGGCTTCGGCCCCCAGCCGCCGACTCCGGACTGGGGCCAGATGATCAACGAGAACGGCGCGGGCATC
ACGGTCGCGCCCTGGTGCGTGCTGGCCCCGGCCCTCGCGATCACGATGCTGGCGGTGGGCACGAACCTGATCAGCGACTG
GCTGATCACCCACTCCGACGGGACGAACCGGGAATGA

Upstream 100 bases:

>100_bases
TCCAGGCGGTGACGATCGTGGTGGCCGCGTTCGTGGTAACGATGAGCGCCGTCGCCGACGGCGCCGTCCGGCTCCTGCTC
CCCCGGACTCGGACAACCCT

Downstream 100 bases:

>100_bases
CCACCAGAACGACCGGCGCACCGGACGTCGGCCACACCCCCGAGGGCTCCGAGGGGCCCGCCGCGGACGTCGTCGTGACC
GATCTGAGCATCGCCGCGGC

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 278; Mature: 277

Protein sequence:

>278_residues
MSEPSAERQHFRGRTGLVIGLLVLGVPVLTTLVGIFVHPYPTTASVSGPLTGPSGAHPLGTDLLGRDVLSRMLVGGRSLL
LITILAVVSAQLLAVTAGLLAGWLGRGGARAVLAVFDVILAVPAVLVLAAAASALGVGGLAAFAAIVVVLTPPTARVVYA
ATRALVTEPYVEAAVLCGTPTRQILSRDLLPNLRTIIVADAGTRMVEAVIIISAAGFLGFGPQPPTPDWGQMINENGAGI
TVAPWCVLAPALAITMLAVGTNLISDWLITHSDGTNRE

Sequences:

>Translated_278_residues
MSEPSAERQHFRGRTGLVIGLLVLGVPVLTTLVGIFVHPYPTTASVSGPLTGPSGAHPLGTDLLGRDVLSRMLVGGRSLL
LITILAVVSAQLLAVTAGLLAGWLGRGGARAVLAVFDVILAVPAVLVLAAAASALGVGGLAAFAAIVVVLTPPTARVVYA
ATRALVTEPYVEAAVLCGTPTRQILSRDLLPNLRTIIVADAGTRMVEAVIIISAAGFLGFGPQPPTPDWGQMINENGAGI
TVAPWCVLAPALAITMLAVGTNLISDWLITHSDGTNRE
>Mature_277_residues
SEPSAERQHFRGRTGLVIGLLVLGVPVLTTLVGIFVHPYPTTASVSGPLTGPSGAHPLGTDLLGRDVLSRMLVGGRSLLL
ITILAVVSAQLLAVTAGLLAGWLGRGGARAVLAVFDVILAVPAVLVLAAAASALGVGGLAAFAAIVVVLTPPTARVVYAA
TRALVTEPYVEAAVLCGTPTRQILSRDLLPNLRTIIVADAGTRMVEAVIIISAAGFLGFGPQPPTPDWGQMINENGAGIT
VAPWCVLAPALAITMLAVGTNLISDWLITHSDGTNRE

Specific function: Part of the binding-protein-dependent transport system for dipeptides; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1173

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787054, Length=262, Percent_Identity=32.0610687022901, Blast_Score=124, Evalue=5e-30,
Organism=Escherichia coli, GI1787760, Length=227, Percent_Identity=30.8370044052863, Blast_Score=104, Evalue=6e-24,
Organism=Escherichia coli, GI1789964, Length=265, Percent_Identity=31.3207547169811, Blast_Score=98, Evalue=5e-22,
Organism=Escherichia coli, GI1787549, Length=209, Percent_Identity=33.9712918660287, Blast_Score=95, Evalue=6e-21,
Organism=Escherichia coli, GI1787498, Length=260, Percent_Identity=28.4615384615385, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1789889, Length=240, Percent_Identity=28.3333333333333, Blast_Score=77, Evalue=1e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 28433; Mature: 28302

Theoretical pI: Translated: 7.58; Mature: 7.58

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEPSAERQHFRGRTGLVIGLLVLGVPVLTTLVGIFVHPYPTTASVSGPLTGPSGAHPLG
CCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
TDLLGRDVLSRMLVGGRSLLLITILAVVSAQLLAVTAGLLAGWLGRGGARAVLAVFDVIL
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
AVPAVLVLAAAASALGVGGLAAFAAIVVVLTPPTARVVYAATRALVTEPYVEAAVLCGTP
HHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC
TRQILSRDLLPNLRTIIVADAGTRMVEAVIIISAAGFLGFGPQPPTPDWGQMINENGAGI
HHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCCCCE
TVAPWCVLAPALAITMLAVGTNLISDWLITHSDGTNRE
EEHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCC
>Mature Secondary Structure 
SEPSAERQHFRGRTGLVIGLLVLGVPVLTTLVGIFVHPYPTTASVSGPLTGPSGAHPLG
CCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
TDLLGRDVLSRMLVGGRSLLLITILAVVSAQLLAVTAGLLAGWLGRGGARAVLAVFDVIL
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
AVPAVLVLAAAASALGVGGLAAFAAIVVVLTPPTARVVYAATRALVTEPYVEAAVLCGTP
HHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC
TRQILSRDLLPNLRTIIVADAGTRMVEAVIIISAAGFLGFGPQPPTPDWGQMINENGAGI
HHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCCCCE
TVAPWCVLAPALAITMLAVGTNLISDWLITHSDGTNRE
EEHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9680333 [H]