| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
Click here to switch to the map view.
The map label for this gene is 158314982
Identifier: 158314982
GI number: 158314982
Start: 3741592
End: 3741732
Strand: Direct
Name: 158314982
Synonym: Franean1_3175
Alternate gene names: NA
Gene position: 3741592-3741732 (Clockwise)
Preceding gene: 158314971
Following gene: 158314984
Centisome position: 41.66
GC content: 68.09
Gene sequence:
>141_bases ATGCGCTGGCGGATCGAGCACGACTACCGCGAGCTCAAAGACGACCTCGGCCTGGACCACTTCGAGGGCCGGTCCTGGAT CGGCTGGCACCGCCACGTCACCCTCGCCTGCCTGGCCCAGGCCCTGCGTACCCAGCTATGA
Upstream 100 bases:
>100_bases CCTCGCCGAATGGCCCGCCGGGCAGGCTGAACCCACCGACTACTGGCTGTCCACCCTGCCCGCAGACATCCCCCTACGCC AGCTCGTCCGTCTCGCGAAG
Downstream 100 bases:
>100_bases CGCACCCCAAAAGACCCTGCGCCGGCCTGACCCTACGGAGTCCTTCGTACCCTCCAGACCCTGCTCAACGTCTGAACCGG CGCCTGCCGCACCTGCCACC
Product: transposase, IS4
Products: NA
Alternate protein names: IS4 Family Transposase; Transposase IS4 Family Protein
Number of amino acids: Translated: 46; Mature: 46
Protein sequence:
>46_residues MRWRIEHDYRELKDDLGLDHFEGRSWIGWHRHVTLACLAQALRTQL
Sequences:
>Translated_46_residues MRWRIEHDYRELKDDLGLDHFEGRSWIGWHRHVTLACLAQALRTQL >Mature_46_residues MRWRIEHDYRELKDDLGLDHFEGRSWIGWHRHVTLACLAQALRTQL
Specific function: Unknown
COG id: COG5659
COG function: function code L; FOG: Transposase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 5630; Mature: 5630
Theoretical pI: Translated: 7.69; Mature: 7.69
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.2 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 2.2 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRWRIEHDYRELKDDLGLDHFEGRSWIGWHRHVTLACLAQALRTQL CCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MRWRIEHDYRELKDDLGLDHFEGRSWIGWHRHVTLACLAQALRTQL CCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA