| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is 158314971
Identifier: 158314971
GI number: 158314971
Start: 3728070
End: 3729293
Strand: Direct
Name: 158314971
Synonym: Franean1_3164
Alternate gene names: NA
Gene position: 3728070-3729293 (Clockwise)
Preceding gene: 158314968
Following gene: 158314982
Centisome position: 41.51
GC content: 69.93
Gene sequence:
>1224_bases GTGGGCCGGCCGGTGGTGCGGACCGAGCGGCGGCAGGTGTTCGACCTGCCCGAGATGCGTCCGCATGTGGTCGAACACGA GTTGGTCGAGCGGGAGTGCGGCTGCGGGAGGCGGACGCGGGCTGCCGCGCCGGCGGGGGTGGATGCCCCGGTCCAGTACG GGCCGCGGGTCACCGCGGCGGCGGTCTACCTGTACGCGGGCCAGTTCCTGTCCAAGGACCGGACCGCGACCGCGCTGGCC GAGCTCGTCGGGATCCCGCTGTCCGCCGGCACGGTCGCGGTGATGACGCGCCGGGCTGCCGCCGGCCTGGACGGTTTCCT CACCACTGTCCGCGGTCTGCTCGCGGGCAGCGAGGTCCTCGGGGCCGACGAGACCGGGCTGCGGGTCGCCGGGAAGCTGC ACTGGGTCCACTGCGCCCGCACCGACAAGTACACCCTGATCGACTGCCATCCGAACCGCGGGAGGGCCGGGATCGACACG CTGGGAGTGCTTCCCGGCTTCGGTGGGGTCGTCGTCCATAACGCCCGGGCGCCCTATGACAGCTACACCGACGCGACCCA CCAGCTGTGTGTCGCTCACGTGCTACGCGAACTACAGGCCGTCGTCGAAGGCGCCCAGGCCGGGCAGTGGTGCTGGGCCG CCCAGGCCACCGACGCGCTCGTCGCCCTCCACACGCAGACCACCGAAGCAGCCGCCGCAGGCGCGGCCGGCCCAGATCTG GCCGAGCTGGCCGCTCAGACCCGGCTGCTGCGCCACGCCGCCCATATCGGGATCAGCCAGACCGCCGACCGGGACACGAA ACTCATGGCGGCCCGCCACGCGCTGGCCTGCCGCCTCGTCGACCGCGAAGCCGACTACCTACGCTTCACCCGGGACCTGC GGATACCGGCGGACAGCAACGGCTGCGAGCGCGACATCCGCATGATCAAACTACGGCAGAAAGTATCCGGGTGCCTACGC ACCCTGACCGGCGCCCGCCAGTTCCGCGCGATCCGAAGCTACCTGTCCACCGTCACCAAACACGACCTCGGTTCTGTTCC ACGCCCTCGTCCAGCTGGCCGAAGGCCGCCCCTGGACGCCCGCAACAGCCTGACCCCAAACCAAAGATCAAAAAAGTACC TGACCAGTTACATCGCCTCGACCCGAGAGCGTGAGACCGCTACTGCACCCACCCGATCGGCGGGACGGGTTACCGACTAC CAGCTAAGGTCAACGTCCACTTAA
Upstream 100 bases:
>100_bases CAGGGCGGGCATCCCGGGTCGACGTTGCGGATGGTCGAGAGAAGCCTGATGCGCGCCGCCGGCACGAGCCGGGGCGGTGT GGGGGGGCGGGACGTCGCTG
Downstream 100 bases:
>100_bases TAATTGGTTCAGCTAAGCGGAATAAGGCCGCGGGCTGTTGGTGAGTAAATGTTCGCGGTGCTCCTCTGGTTGCAGTGAGT CGGTGATTTAACTCGGTAGT
Product: hypothetical protein
Products: NA
Alternate protein names: Transposase IS; Archae-Like Transposase; Transposase Of; Transposase Is
Number of amino acids: Translated: 407; Mature: 406
Protein sequence:
>407_residues MGRPVVRTERRQVFDLPEMRPHVVEHELVERECGCGRRTRAAAPAGVDAPVQYGPRVTAAAVYLYAGQFLSKDRTATALA ELVGIPLSAGTVAVMTRRAAAGLDGFLTTVRGLLAGSEVLGADETGLRVAGKLHWVHCARTDKYTLIDCHPNRGRAGIDT LGVLPGFGGVVVHNARAPYDSYTDATHQLCVAHVLRELQAVVEGAQAGQWCWAAQATDALVALHTQTTEAAAAGAAGPDL AELAAQTRLLRHAAHIGISQTADRDTKLMAARHALACRLVDREADYLRFTRDLRIPADSNGCERDIRMIKLRQKVSGCLR TLTGARQFRAIRSYLSTVTKHDLGSVPRPRPAGRRPPLDARNSLTPNQRSKKYLTSYIASTRERETATAPTRSAGRVTDY QLRSTST
Sequences:
>Translated_407_residues MGRPVVRTERRQVFDLPEMRPHVVEHELVERECGCGRRTRAAAPAGVDAPVQYGPRVTAAAVYLYAGQFLSKDRTATALA ELVGIPLSAGTVAVMTRRAAAGLDGFLTTVRGLLAGSEVLGADETGLRVAGKLHWVHCARTDKYTLIDCHPNRGRAGIDT LGVLPGFGGVVVHNARAPYDSYTDATHQLCVAHVLRELQAVVEGAQAGQWCWAAQATDALVALHTQTTEAAAAGAAGPDL AELAAQTRLLRHAAHIGISQTADRDTKLMAARHALACRLVDREADYLRFTRDLRIPADSNGCERDIRMIKLRQKVSGCLR TLTGARQFRAIRSYLSTVTKHDLGSVPRPRPAGRRPPLDARNSLTPNQRSKKYLTSYIASTRERETATAPTRSAGRVTDY QLRSTST >Mature_406_residues GRPVVRTERRQVFDLPEMRPHVVEHELVERECGCGRRTRAAAPAGVDAPVQYGPRVTAAAVYLYAGQFLSKDRTATALAE LVGIPLSAGTVAVMTRRAAAGLDGFLTTVRGLLAGSEVLGADETGLRVAGKLHWVHCARTDKYTLIDCHPNRGRAGIDTL GVLPGFGGVVVHNARAPYDSYTDATHQLCVAHVLRELQAVVEGAQAGQWCWAAQATDALVALHTQTTEAAAAGAAGPDLA ELAAQTRLLRHAAHIGISQTADRDTKLMAARHALACRLVDREADYLRFTRDLRIPADSNGCERDIRMIKLRQKVSGCLRT LTGARQFRAIRSYLSTVTKHDLGSVPRPRPAGRRPPLDARNSLTPNQRSKKYLTSYIASTRERETATAPTRSAGRVTDYQ LRSTST
Specific function: Unknown
COG id: COG3436
COG function: function code L; Transposase and inactivated derivatives
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 44123; Mature: 43992
Theoretical pI: Translated: 10.11; Mature: 10.11
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.2 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 2.2 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGRPVVRTERRQVFDLPEMRPHVVEHELVERECGCGRRTRAAAPAGVDAPVQYGPRVTAA CCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHH AVYLYAGQFLSKDRTATALAELVGIPLSAGTVAVMTRRAAAGLDGFLTTVRGLLAGSEVL HHHHHHHHHHCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHCHHHHHHHHHHHHCCCHHC GADETGLRVAGKLHWVHCARTDKYTLIDCHPNRGRAGIDTLGVLPGFGGVVVHNARAPYD CCCCCCCEEECEEEEEEEECCCCEEEEEECCCCCCCCCHHHHCCCCCCCEEEECCCCCCC SYTDATHQLCVAHVLRELQAVVEGAQAGQWCWAAQATDALVALHTQTTEAAAAGAAGPDL CHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHCCEEEEEECCCHHHHHCCCCCCHH AELAAQTRLLRHAAHIGISQTADRDTKLMAARHALACRLVDREADYLRFTRDLRIPADSN HHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHEECCCCCC GCERDIRMIKLRQKVSGCLRTLTGARQFRAIRSYLSTVTKHDLGSVPRPRPAGRRPPLDA CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC RNSLTPNQRSKKYLTSYIASTRERETATAPTRSAGRVTDYQLRSTST CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCC >Mature Secondary Structure GRPVVRTERRQVFDLPEMRPHVVEHELVERECGCGRRTRAAAPAGVDAPVQYGPRVTAA CCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHH AVYLYAGQFLSKDRTATALAELVGIPLSAGTVAVMTRRAAAGLDGFLTTVRGLLAGSEVL HHHHHHHHHHCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHCHHHHHHHHHHHHCCCHHC GADETGLRVAGKLHWVHCARTDKYTLIDCHPNRGRAGIDTLGVLPGFGGVVVHNARAPYD CCCCCCCEEECEEEEEEEECCCCEEEEEECCCCCCCCCHHHHCCCCCCCEEEECCCCCCC SYTDATHQLCVAHVLRELQAVVEGAQAGQWCWAAQATDALVALHTQTTEAAAAGAAGPDL CHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHCCEEEEEECCCHHHHHCCCCCCHH AELAAQTRLLRHAAHIGISQTADRDTKLMAARHALACRLVDREADYLRFTRDLRIPADSN HHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHEECCCCCC GCERDIRMIKLRQKVSGCLRTLTGARQFRAIRSYLSTVTKHDLGSVPRPRPAGRRPPLDA CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC RNSLTPNQRSKKYLTSYIASTRERETATAPTRSAGRVTDYQLRSTST CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA