| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is 158314984
Identifier: 158314984
GI number: 158314984
Start: 3742682
End: 3744391
Strand: Direct
Name: 158314984
Synonym: Franean1_3178
Alternate gene names: NA
Gene position: 3742682-3744391 (Clockwise)
Preceding gene: 158314982
Following gene: 158314986
Centisome position: 41.67
GC content: 70.82
Gene sequence:
>1710_bases ATGCGTCCCCATGCCCGCCACTGCCGTCGTCGAGAGGGACTGCCAGTGAGCAAGCAGGAGAGCGCTCGCGACCCATCGGT GGGGGAGCGCGACGATCGCCGAGTGGCGATTCCTCACCGTCCTCGACGGTGGTCGAGGCTTCGCCTGCTCGGTGGCCTCG TCCTCGTGCTGTGCATCGGCGCGCTGGCCGCGTGCGGGGGCTCCGGCGGTTCTGGGGGGCAGCCGGCCGCGGCGCCGACG GCGGGCCTGTCCCGGCGGGAACCGGCCCCTGGCCCGGCGGCGACCATCACGGGTCCGGTCACGGGTGGTAAGGGTGCGCC CACACTCGTAGAAGTGGCGGGGACCGTCGATCTTCGGCCGCACGGGTACGTCGAGAGTGAGTACTTCGCCTCCGGGACCG CGCAGTCCTACACCGCCGCCGACGCCAGGCCCGCGAACGGCCGGATTTCGGCGGAGCCGGGCACGACCGCCGACTACCGG ACCCGCCTGATCGTGCGCCGGCCCAGCGACCCGGCGGCCTTCAACGGCACGGTCCTCGTCGAGTGGCTCAACGTGACCAG CGGCCAGGACGCCGACCCCGGCTGGGTGTACCTCTCGCCGGAGATCATGCGCCGTGGCTATGCCTACGTCGCGGTTACGG CCCAGCAGGTCGGTGTCGACGGAGCCGGTGAGGGCGGGATCTCGGCAATTCTCGGGTTGACACAGCCGGGACTACGGGAG GCGGATCCGGGCCGGTACGCATCGTTGAGTCATCCTGGCGACCCCTACTCGTACGACATATTCACGCAGGTCGGCCGGGC ACTTCGCAGCCCGGCCGGCGAGGGCGCTTCAACCAGCGGAGGCGGACCGACCGGACCGGGCGGAGCCCCTGCGGCGAGTG GGCCCGGCACCGATCCCGCCGCGAACCCGCTGGGCGATCTCGTGCTGGAGCGCCTGATCGCCGTCGGTGAATCGCAGTCC GCGGCCACGATGTCCACATATGCCAACGCGGTCCAGCCGCTGACGCGCCAATTCGACGGATTCCTCATACATAGTCGCGG CAGCGGGATCGCGCCGCTGGCCGGCAGCGTCCAGGCCGGGGACATGGCCGGCGACCCCGTCCCGATCCGGAACGATCTGG ATGTGCCAGTGCTGGTGTTCGAGACCGAGACCGACCTGTCGGTGCTCGAGTACAGCAAGGTTACCCAGCCCGACACCACG TTCGTGCGGGTCTGGGAGGTGGCGGGCACGTCCCACGCCGATCGTGCCATCATCGGCGACTACGCCCCGCTGCTCGGTTG CGATCCGAACATCAACGACGGCCCGCAACCGTACGTCCTGCGCGCCGGGCTGGCGACGCTCGTCCACTGGGTGCGTACCG GGCAGGCTCCCCCGTCCGCGCCCCGGTTGCAGGTCGCCGCGAATGAGCGGGACCTGGCCCGTGACTCCCACGGCATCGCC CTGGGCGGCGTCCGCACCCCCGTCGTCGACGTTCCCGTCGCGGCCGTCAGCGGCGTCCCCGGAACGAAGGGGAGTCTTCA GTGCTCGTTTCTCGGCAGCTCGACGCCCTTCGGTGTGGCGACCATCAGATCCCTCTATCCCGACCGGAGCGCGTACCTCG ATGCCTTCACCGCCGCGACAGACCGCGCCATCGAGGCGGGCCACGTCCTCCCCGCCGACCGTACGGACCTGATAGCCCGG GCGGAGATCTACCAGTTCCCCGCGCTCTGA
Upstream 100 bases:
>100_bases CTCGGTCTCCGGTGGGCGGGGCTCGCAAAACCTAGTGCCAGTAAATTTTTACTGCTAGTGTTCCAGATGACAAGCGGTGA TCTGTGGAAGGTCCACGGGC
Downstream 100 bases:
>100_bases CCCCAGCACCCAGCGGGCCCTGCAACGGACGTTCTGCCCATCTTGTTCCTCCAGGTCGCCCCCTGTTCCCCGGGTCTTCT CCTTCTCCGCGGCGGCCTTC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 569; Mature: 569
Protein sequence:
>569_residues MRPHARHCRRREGLPVSKQESARDPSVGERDDRRVAIPHRPRRWSRLRLLGGLVLVLCIGALAACGGSGGSGGQPAAAPT AGLSRREPAPGPAATITGPVTGGKGAPTLVEVAGTVDLRPHGYVESEYFASGTAQSYTAADARPANGRISAEPGTTADYR TRLIVRRPSDPAAFNGTVLVEWLNVTSGQDADPGWVYLSPEIMRRGYAYVAVTAQQVGVDGAGEGGISAILGLTQPGLRE ADPGRYASLSHPGDPYSYDIFTQVGRALRSPAGEGASTSGGGPTGPGGAPAASGPGTDPAANPLGDLVLERLIAVGESQS AATMSTYANAVQPLTRQFDGFLIHSRGSGIAPLAGSVQAGDMAGDPVPIRNDLDVPVLVFETETDLSVLEYSKVTQPDTT FVRVWEVAGTSHADRAIIGDYAPLLGCDPNINDGPQPYVLRAGLATLVHWVRTGQAPPSAPRLQVAANERDLARDSHGIA LGGVRTPVVDVPVAAVSGVPGTKGSLQCSFLGSSTPFGVATIRSLYPDRSAYLDAFTAATDRAIEAGHVLPADRTDLIAR AEIYQFPAL
Sequences:
>Translated_569_residues MRPHARHCRRREGLPVSKQESARDPSVGERDDRRVAIPHRPRRWSRLRLLGGLVLVLCIGALAACGGSGGSGGQPAAAPT AGLSRREPAPGPAATITGPVTGGKGAPTLVEVAGTVDLRPHGYVESEYFASGTAQSYTAADARPANGRISAEPGTTADYR TRLIVRRPSDPAAFNGTVLVEWLNVTSGQDADPGWVYLSPEIMRRGYAYVAVTAQQVGVDGAGEGGISAILGLTQPGLRE ADPGRYASLSHPGDPYSYDIFTQVGRALRSPAGEGASTSGGGPTGPGGAPAASGPGTDPAANPLGDLVLERLIAVGESQS AATMSTYANAVQPLTRQFDGFLIHSRGSGIAPLAGSVQAGDMAGDPVPIRNDLDVPVLVFETETDLSVLEYSKVTQPDTT FVRVWEVAGTSHADRAIIGDYAPLLGCDPNINDGPQPYVLRAGLATLVHWVRTGQAPPSAPRLQVAANERDLARDSHGIA LGGVRTPVVDVPVAAVSGVPGTKGSLQCSFLGSSTPFGVATIRSLYPDRSAYLDAFTAATDRAIEAGHVLPADRTDLIAR AEIYQFPAL >Mature_569_residues MRPHARHCRRREGLPVSKQESARDPSVGERDDRRVAIPHRPRRWSRLRLLGGLVLVLCIGALAACGGSGGSGGQPAAAPT AGLSRREPAPGPAATITGPVTGGKGAPTLVEVAGTVDLRPHGYVESEYFASGTAQSYTAADARPANGRISAEPGTTADYR TRLIVRRPSDPAAFNGTVLVEWLNVTSGQDADPGWVYLSPEIMRRGYAYVAVTAQQVGVDGAGEGGISAILGLTQPGLRE ADPGRYASLSHPGDPYSYDIFTQVGRALRSPAGEGASTSGGGPTGPGGAPAASGPGTDPAANPLGDLVLERLIAVGESQS AATMSTYANAVQPLTRQFDGFLIHSRGSGIAPLAGSVQAGDMAGDPVPIRNDLDVPVLVFETETDLSVLEYSKVTQPDTT FVRVWEVAGTSHADRAIIGDYAPLLGCDPNINDGPQPYVLRAGLATLVHWVRTGQAPPSAPRLQVAANERDLARDSHGIA LGGVRTPVVDVPVAAVSGVPGTKGSLQCSFLGSSTPFGVATIRSLYPDRSAYLDAFTAATDRAIEAGHVLPADRTDLIAR AEIYQFPAL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 59028; Mature: 59028
Theoretical pI: Translated: 6.36; Mature: 6.36
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 0.7 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRPHARHCRRREGLPVSKQESARDPSVGERDDRRVAIPHRPRRWSRLRLLGGLVLVLCIG CCCHHHHHHHHCCCCCCCHHCCCCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHH ALAACGGSGGSGGQPAAAPTAGLSRREPAPGPAATITGPVTGGKGAPTLVEVAGTVDLRP HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCEEEEEECEEECCC HGYVESEYFASGTAQSYTAADARPANGRISAEPGTTADYRTRLIVRRPSDPAAFNGTVLV CCCCCCHHHCCCCCCCCCCCCCCCCCCEEECCCCCCCCCEEEEEEECCCCCCCCCCEEEE EWLNVTSGQDADPGWVYLSPEIMRRGYAYVAVTAQQVGVDGAGEGGISAILGLTQPGLRE EEEECCCCCCCCCCEEEECHHHHHCCCEEEEEEHHHHCCCCCCCCCHHHHHHCCCCCCCC ADPGRYASLSHPGDPYSYDIFTQVGRALRSPAGEGASTSGGGPTGPGGAPAASGPGTDPA CCCCCEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC ANPLGDLVLERLIAVGESQSAATMSTYANAVQPLTRQFDGFLIHSRGSGIAPLAGSVQAG CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCC DMAGDPVPIRNDLDVPVLVFETETDLSVLEYSKVTQPDTTFVRVWEVAGTSHADRAIIGD CCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHCCCCCCEEEEEEEECCCCCCCCCHHCC YAPLLGCDPNINDGPQPYVLRAGLATLVHWVRTGQAPPSAPRLQVAANERDLARDSHGIA CCHHCCCCCCCCCCCCCEEHHHHHHHHHHHHHCCCCCCCCCCEEEECCCHHHHHCCCCEE LGGVRTPVVDVPVAAVSGVPGTKGSLQCSFLGSSTPFGVATIRSLYPDRSAYLDAFTAAT ECCCCCCEEECCHHHHCCCCCCCCCEEEEEECCCCCCHHHHHHHHCCCHHHHHHHHHHHH DRAIEAGHVLPADRTDLIARAEIYQFPAL HHHHHCCCCCCCCCHHHHHHHHHHCCCCC >Mature Secondary Structure MRPHARHCRRREGLPVSKQESARDPSVGERDDRRVAIPHRPRRWSRLRLLGGLVLVLCIG CCCHHHHHHHHCCCCCCCHHCCCCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHH ALAACGGSGGSGGQPAAAPTAGLSRREPAPGPAATITGPVTGGKGAPTLVEVAGTVDLRP HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCEEEEEECEEECCC HGYVESEYFASGTAQSYTAADARPANGRISAEPGTTADYRTRLIVRRPSDPAAFNGTVLV CCCCCCHHHCCCCCCCCCCCCCCCCCCEEECCCCCCCCCEEEEEEECCCCCCCCCCEEEE EWLNVTSGQDADPGWVYLSPEIMRRGYAYVAVTAQQVGVDGAGEGGISAILGLTQPGLRE EEEECCCCCCCCCCEEEECHHHHHCCCEEEEEEHHHHCCCCCCCCCHHHHHHCCCCCCCC ADPGRYASLSHPGDPYSYDIFTQVGRALRSPAGEGASTSGGGPTGPGGAPAASGPGTDPA CCCCCEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC ANPLGDLVLERLIAVGESQSAATMSTYANAVQPLTRQFDGFLIHSRGSGIAPLAGSVQAG CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCC DMAGDPVPIRNDLDVPVLVFETETDLSVLEYSKVTQPDTTFVRVWEVAGTSHADRAIIGD CCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHCCCCCCEEEEEEEECCCCCCCCCHHCC YAPLLGCDPNINDGPQPYVLRAGLATLVHWVRTGQAPPSAPRLQVAANERDLARDSHGIA CCHHCCCCCCCCCCCCCEEHHHHHHHHHHHHHCCCCCCCCCCEEEECCCHHHHHCCCCEE LGGVRTPVVDVPVAAVSGVPGTKGSLQCSFLGSSTPFGVATIRSLYPDRSAYLDAFTAAT ECCCCCCEEECCHHHHCCCCCCCCCEEEEEECCCCCCHHHHHHHHCCCHHHHHHHHHHHH DRAIEAGHVLPADRTDLIARAEIYQFPAL HHHHHCCCCCCCCCHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA