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The map label for this gene is yfdE [H]

Identifier: 158314947

GI number: 158314947

Start: 3692444

End: 3693703

Strand: Direct

Name: yfdE [H]

Synonym: Franean1_3138

Alternate gene names: 158314947

Gene position: 3692444-3693703 (Clockwise)

Preceding gene: 158314946

Following gene: 158314948

Centisome position: 41.11

GC content: 66.35

Gene sequence:

>1260_bases
ATGACCGCCGGCCGCTCGAACGGCTCGGAGGCGCCGTACGGACCCCTCGCAGGGGTGACCGTCCTCGATCTCACGAGCTA
CGTGTCCGGTCCGTTGTGCACCATGATCCTGGGTGACCTTGGTGCCATGGTGATCAAGGTGGAGGAGTCCGGGAAGGGTG
ACGGCATCCGAGCCTGGTCGGCCGAGGCGGGACCGGACAACGGGTACTTCCTTGCGGTCAACCGCAACAAGCTCAGCGTG
GCTCTCGACCTGAAGACCGAAGAGGGCCGGGCGGTGTTGACGAGGCTCGTGGCGCGCAGTGACGTCTTCATTCACAACAT
GCTGGCGCGGTCGGAGGAGGCGTTACGCATTTCCGAGGAGGACATCAGAGCGATCAAGCCAGACATCGTCTACAGCGTGA
TCGCCGGCTACCCGCGAGGCAGCACCGAGCCCGCCTTCGACTTCATCATGCAGGCGGCGACGGGACTGATGGGTCTCATG
GGTGAACCCGACGGCCCGCCTGTCAAGGTGCCCTTCCCGATTTTCGACGTAACCGCAGCCTACAACGCCTGCATCGGCAT
CGTCGCCGTGCTCTGCGGCCAGCGTGAGCGTCGCACCGCCCCCGAAGGGCACCGGGTGGACGTCAACATGTACGACGCGG
CGCTCGCGTCCATGCCCAATCTGCTCGGTAACTACCTGGTGGACGGCACGGTGCCCCACCGGACAGCCGGCAGTATTCAC
GCGAACATCGCACCCTACGAGCTGTTCATGACCGATGAGGGATGGCTGGCCCTCGGCGGCGGCACGCCCGGTCAGTGGAC
GTCGCTGTGCTCCGTGCTCGGTCTCGAGTCGCTTCTGGCCGACGACCGCTTCAAGGACAACGCCTCTCGGGTCCGCAACC
GCGGGGCACTACACGAGCTGATCGAGGGCGTGCTCGCCACGGCACCCATGGACACCTGGATCAACGCGCTGAAGGCACGC
CGGGTCCCGGTGACGAAGGTTAACAATCTGGACGACGTACTGGCCGCGACGGACATGGTCCAACCAGTGGACCACCCGAC
GCGCGGCAGGGTTCACCTGCCGACGAGCGCCATCGTGATCGACCGTGTGCTCCCCGTCGCGGGGAACCCGCCTCCTCGGC
TGGGCGAGAACACACGCGACGTCCTGGTGGCCGTGGGGGGACTCGAGCACGAGCAGGTCGACCGGCTAGGTGACGCCGGA
ACCGTCACCGAACTCCCCGGTCGAGCGGAGGATCTCGAGGACGCGCGTCGGACAGGCTGA

Upstream 100 bases:

>100_bases
ACCACATCGTCGTGGGGCCTCCGGTGCCGGACTACGCGGGCGCGATGCCCACCGACTCCGAGCAGGTGCGAGGGATCGCG
CACGGCACCGCGGTGCTCCG

Downstream 100 bases:

>100_bases
CCTGTCGGCCGCCAGCACGAGGAATGCATGACCGAGACAGGCGACATGGCGAGCACGACGCGAACCACACCACCAGCCGA
AGGGAGAAGCCATGACACTC

Product: L-carnitine dehydratase/bile acid-inducible protein F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 419; Mature: 418

Protein sequence:

>419_residues
MTAGRSNGSEAPYGPLAGVTVLDLTSYVSGPLCTMILGDLGAMVIKVEESGKGDGIRAWSAEAGPDNGYFLAVNRNKLSV
ALDLKTEEGRAVLTRLVARSDVFIHNMLARSEEALRISEEDIRAIKPDIVYSVIAGYPRGSTEPAFDFIMQAATGLMGLM
GEPDGPPVKVPFPIFDVTAAYNACIGIVAVLCGQRERRTAPEGHRVDVNMYDAALASMPNLLGNYLVDGTVPHRTAGSIH
ANIAPYELFMTDEGWLALGGGTPGQWTSLCSVLGLESLLADDRFKDNASRVRNRGALHELIEGVLATAPMDTWINALKAR
RVPVTKVNNLDDVLAATDMVQPVDHPTRGRVHLPTSAIVIDRVLPVAGNPPPRLGENTRDVLVAVGGLEHEQVDRLGDAG
TVTELPGRAEDLEDARRTG

Sequences:

>Translated_419_residues
MTAGRSNGSEAPYGPLAGVTVLDLTSYVSGPLCTMILGDLGAMVIKVEESGKGDGIRAWSAEAGPDNGYFLAVNRNKLSV
ALDLKTEEGRAVLTRLVARSDVFIHNMLARSEEALRISEEDIRAIKPDIVYSVIAGYPRGSTEPAFDFIMQAATGLMGLM
GEPDGPPVKVPFPIFDVTAAYNACIGIVAVLCGQRERRTAPEGHRVDVNMYDAALASMPNLLGNYLVDGTVPHRTAGSIH
ANIAPYELFMTDEGWLALGGGTPGQWTSLCSVLGLESLLADDRFKDNASRVRNRGALHELIEGVLATAPMDTWINALKAR
RVPVTKVNNLDDVLAATDMVQPVDHPTRGRVHLPTSAIVIDRVLPVAGNPPPRLGENTRDVLVAVGGLEHEQVDRLGDAG
TVTELPGRAEDLEDARRTG
>Mature_418_residues
TAGRSNGSEAPYGPLAGVTVLDLTSYVSGPLCTMILGDLGAMVIKVEESGKGDGIRAWSAEAGPDNGYFLAVNRNKLSVA
LDLKTEEGRAVLTRLVARSDVFIHNMLARSEEALRISEEDIRAIKPDIVYSVIAGYPRGSTEPAFDFIMQAATGLMGLMG
EPDGPPVKVPFPIFDVTAAYNACIGIVAVLCGQRERRTAPEGHRVDVNMYDAALASMPNLLGNYLVDGTVPHRTAGSIHA
NIAPYELFMTDEGWLALGGGTPGQWTSLCSVLGLESLLADDRFKDNASRVRNRGALHELIEGVLATAPMDTWINALKARR
VPVTKVNNLDDVLAATDMVQPVDHPTRGRVHLPTSAIVIDRVLPVAGNPPPRLGENTRDVLVAVGGLEHEQVDRLGDAGT
VTELPGRAEDLEDARRTG

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=401, Percent_Identity=32.1695760598504, Blast_Score=221, Evalue=7e-58,
Organism=Homo sapiens, GI300863124, Length=427, Percent_Identity=30.2107728337237, Blast_Score=211, Evalue=7e-55,
Organism=Homo sapiens, GI300863126, Length=415, Percent_Identity=29.6385542168675, Blast_Score=189, Evalue=3e-48,
Organism=Homo sapiens, GI13376042, Length=427, Percent_Identity=27.6346604215457, Blast_Score=172, Evalue=4e-43,
Organism=Homo sapiens, GI266456254, Length=408, Percent_Identity=23.5294117647059, Blast_Score=77, Evalue=3e-14,
Organism=Homo sapiens, GI42794625, Length=408, Percent_Identity=23.5294117647059, Blast_Score=77, Evalue=3e-14,
Organism=Homo sapiens, GI266458393, Length=271, Percent_Identity=25.830258302583, Blast_Score=70, Evalue=3e-12,
Organism=Homo sapiens, GI266458397, Length=237, Percent_Identity=25.3164556962025, Blast_Score=70, Evalue=4e-12,
Organism=Homo sapiens, GI266458395, Length=123, Percent_Identity=31.7073170731707, Blast_Score=67, Evalue=4e-11,
Organism=Homo sapiens, GI42822893, Length=123, Percent_Identity=31.7073170731707, Blast_Score=66, Evalue=5e-11,
Organism=Escherichia coli, GI87082093, Length=316, Percent_Identity=33.2278481012658, Blast_Score=179, Evalue=3e-46,
Organism=Escherichia coli, GI1788717, Length=205, Percent_Identity=32.1951219512195, Blast_Score=97, Evalue=3e-21,
Organism=Escherichia coli, GI1786222, Length=308, Percent_Identity=22.7272727272727, Blast_Score=71, Evalue=1e-13,
Organism=Drosophila melanogaster, GI24648431, Length=395, Percent_Identity=33.1645569620253, Blast_Score=205, Evalue=5e-53,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 44760; Mature: 44628

Theoretical pI: Translated: 4.82; Mature: 4.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTAGRSNGSEAPYGPLAGVTVLDLTSYVSGPLCTMILGDLGAMVIKVEESGKGDGIRAWS
CCCCCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHCCCEEEEEEECCCCCCCEEEEE
AEAGPDNGYFLAVNRNKLSVALDLKTEEGRAVLTRLVARSDVFIHNMLARSEEALRISEE
CCCCCCCCEEEEEECCEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCHHHHCCCHH
DIRAIKPDIVYSVIAGYPRGSTEPAFDFIMQAATGLMGLMGEPDGPPVKVPFPIFDVTAA
HHHHHCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEECCCHHHHHHH
YNACIGIVAVLCGQRERRTAPEGHRVDVNMYDAALASMPNLLGNYLVDGTVPHRTAGSIH
HHHHHHHHHHHHCCHHHCCCCCCCEEEEHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEE
ANIAPYELFMTDEGWLALGGGTPGQWTSLCSVLGLESLLADDRFKDNASRVRNRGALHEL
CCCCCEEEEEECCCEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCHHHHH
IEGVLATAPMDTWINALKARRVPVTKVNNLDDVLAATDMVQPVDHPTRGRVHLPTSAIVI
HHHHHHHCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEECCHHHHHH
DRVLPVAGNPPPRLGENTRDVLVAVGGLEHEQVDRLGDAGTVTELPGRAEDLEDARRTG
HHHHCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHCCCCCCCCCCCCCHHHHHHHHCCC
>Mature Secondary Structure 
TAGRSNGSEAPYGPLAGVTVLDLTSYVSGPLCTMILGDLGAMVIKVEESGKGDGIRAWS
CCCCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHCCCEEEEEEECCCCCCCEEEEE
AEAGPDNGYFLAVNRNKLSVALDLKTEEGRAVLTRLVARSDVFIHNMLARSEEALRISEE
CCCCCCCCEEEEEECCEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCHHHHCCCHH
DIRAIKPDIVYSVIAGYPRGSTEPAFDFIMQAATGLMGLMGEPDGPPVKVPFPIFDVTAA
HHHHHCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEECCCHHHHHHH
YNACIGIVAVLCGQRERRTAPEGHRVDVNMYDAALASMPNLLGNYLVDGTVPHRTAGSIH
HHHHHHHHHHHHCCHHHCCCCCCCEEEEHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEE
ANIAPYELFMTDEGWLALGGGTPGQWTSLCSVLGLESLLADDRFKDNASRVRNRGALHEL
CCCCCEEEEEECCCEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCHHHHH
IEGVLATAPMDTWINALKARRVPVTKVNNLDDVLAATDMVQPVDHPTRGRVHLPTSAIVI
HHHHHHHCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEECCHHHHHH
DRVLPVAGNPPPRLGENTRDVLVAVGGLEHEQVDRLGDAGTVTELPGRAEDLEDARRTG
HHHHCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHCCCCCCCCCCCCCHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]