| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is 158314943
Identifier: 158314943
GI number: 158314943
Start: 3688413
End: 3689612
Strand: Direct
Name: 158314943
Synonym: Franean1_3134
Alternate gene names: NA
Gene position: 3688413-3689612 (Clockwise)
Preceding gene: 158314942
Following gene: 158314944
Centisome position: 41.06
GC content: 67.08
Gene sequence:
>1200_bases ATGACGACCAAGACTCACAACACGGACAAGTCGGTGCGCTACGACCTCGTCCTACGCGGCGGACGGGTGTTCGACACCAC AATCGCGCCGGCCCCGACCGTCTTGGACATCGCCATCACCGACGGACGGGTGGCCACCGTGGCGCCGCACGTCGACGGTG TGGGAACGCGGGAGATCGACTGTACCGATCGCGTTGTGACGCCGGGGCTGCTGGACGTGCACGTCCACTGCTTCGAGGGA ATGGCCATGACCATTGGCATGTCGTCCTACGACGCGACCCTGCGTCGTGGCGTGGTCGGTTGTGTCGACACGGGAACGTC AGGAGCCTCCAACTTCCGTGGCTTCCGCCGCTTCGCGGTGGGCGACAACGAGTTCCGCGTACTGGCGTTCCTCAACGTCT CGGTGCTCGGAGTGACGGACAAGCGGCACGGCGAGTTACAGGACATCTCGGTCATCCATGTGGACGACGCGGTGAACGCC GCCAAGGCGAACCCTTCGATCATCCGCGGCTTCAAGGTGCGGCTGTCCCGGAACATCGCGTTGGAGCCGGCGAAGTCTCT GGACCTGGCCCGCGAGATCGCCGGCCTGGCGGGCCTGCCACTGATGGTCCACATCAGCAAGACGGACATCAGCACCGACG ACATCCTGGCGCGGCTTGCCCCCGGAGACGTCGTCACCCACGCCTTCACCGGGCTCGAGGGAGGCATTGTCGAGAACGGC TCGGTGCGACCCGCGGCCTGGGAGGCCCGTGAACGGGGCGTGCTGTTCGACATCGGTCACGGCCGCACCCAGTTCGACCA CGGGGTGGCCCGTATCGCGCTCGACGAAGGCTTCGTCCCCGATTTCCTGGGTTCGGACCTCAGCAACGGCAACCAGTTCG GTCCGGCCTTCGATCTCCCGACCGTCATGGCCAAGATGGTCACCCTGGGGATGCCGATTCAGGACGTGGTCGCGGCAACG ACGCTCCGCGCCGCTGAGTTCCTCGGGCTGCGGGACGAGGGCTACGGCGCGATCACGGTGGGCAGGCCGGCGTTCGTGAC CGTCATGGAGCATCTCGACCACGTGGACTCGCTGCCGGACGCCTCTGGGGCGGAGCTCGAGGTCAGGCGACTGGAGCCGC TGTTCGCCGTCAACAAGGGTGTCGTCCACGACTCCGATCCGTGGCGGGGCGGGCAGCCCGAGCCGCCGGCGGAGTGGTGA
Upstream 100 bases:
>100_bases AGTCCACCACCCGCGAGTCGACCCGACCGAGTTCGAGTCACCGGCTGGCAGCCGGTGAAGCCCGTTCCGACGAACACCTG AGAAAGGACGTGTGCTAGCG
Downstream 100 bases:
>100_bases TGCTTCAACTCGATGGCAGGGCTCGTGGAAGTTGGGGATTCGCGGCCCGACAGGGGAGGAGAGTTTCGTGAGCTCGTGGG TGAAACTGGTTGTAGACGAG
Product: amidohydrolase
Products: NA
Alternate protein names: Amidohydrolase; Amidohydrolase Family Protein; Metallo-Dependent Hydrolase; Aminohydrolase; Protein PhnM; LOW QUALITY PROTEIN Amidohydrolase
Number of amino acids: Translated: 399; Mature: 398
Protein sequence:
>399_residues MTTKTHNTDKSVRYDLVLRGGRVFDTTIAPAPTVLDIAITDGRVATVAPHVDGVGTREIDCTDRVVTPGLLDVHVHCFEG MAMTIGMSSYDATLRRGVVGCVDTGTSGASNFRGFRRFAVGDNEFRVLAFLNVSVLGVTDKRHGELQDISVIHVDDAVNA AKANPSIIRGFKVRLSRNIALEPAKSLDLAREIAGLAGLPLMVHISKTDISTDDILARLAPGDVVTHAFTGLEGGIVENG SVRPAAWEARERGVLFDIGHGRTQFDHGVARIALDEGFVPDFLGSDLSNGNQFGPAFDLPTVMAKMVTLGMPIQDVVAAT TLRAAEFLGLRDEGYGAITVGRPAFVTVMEHLDHVDSLPDASGAELEVRRLEPLFAVNKGVVHDSDPWRGGQPEPPAEW
Sequences:
>Translated_399_residues MTTKTHNTDKSVRYDLVLRGGRVFDTTIAPAPTVLDIAITDGRVATVAPHVDGVGTREIDCTDRVVTPGLLDVHVHCFEG MAMTIGMSSYDATLRRGVVGCVDTGTSGASNFRGFRRFAVGDNEFRVLAFLNVSVLGVTDKRHGELQDISVIHVDDAVNA AKANPSIIRGFKVRLSRNIALEPAKSLDLAREIAGLAGLPLMVHISKTDISTDDILARLAPGDVVTHAFTGLEGGIVENG SVRPAAWEARERGVLFDIGHGRTQFDHGVARIALDEGFVPDFLGSDLSNGNQFGPAFDLPTVMAKMVTLGMPIQDVVAAT TLRAAEFLGLRDEGYGAITVGRPAFVTVMEHLDHVDSLPDASGAELEVRRLEPLFAVNKGVVHDSDPWRGGQPEPPAEW >Mature_398_residues TTKTHNTDKSVRYDLVLRGGRVFDTTIAPAPTVLDIAITDGRVATVAPHVDGVGTREIDCTDRVVTPGLLDVHVHCFEGM AMTIGMSSYDATLRRGVVGCVDTGTSGASNFRGFRRFAVGDNEFRVLAFLNVSVLGVTDKRHGELQDISVIHVDDAVNAA KANPSIIRGFKVRLSRNIALEPAKSLDLAREIAGLAGLPLMVHISKTDISTDDILARLAPGDVVTHAFTGLEGGIVENGS VRPAAWEARERGVLFDIGHGRTQFDHGVARIALDEGFVPDFLGSDLSNGNQFGPAFDLPTVMAKMVTLGMPIQDVVAATT LRAAEFLGLRDEGYGAITVGRPAFVTVMEHLDHVDSLPDASGAELEVRRLEPLFAVNKGVVHDSDPWRGGQPEPPAEW
Specific function: Unknown
COG id: COG3964
COG function: function code R; Predicted amidohydrolase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 42745; Mature: 42614
Theoretical pI: Translated: 5.25; Mature: 5.25
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTKTHNTDKSVRYDLVLRGGRVFDTTIAPAPTVLDIAITDGRVATVAPHVDGVGTREID CCCCCCCCCCCEEEEEEEECCEEEEEECCCCCEEEEEEEECCEEEEEECCCCCCCCCCCC CTDRVVTPGLLDVHVHCFEGMAMTIGMSSYDATLRRGVVGCVDTGTSGASNFRGFRRFAV CCCCCCCCCEEEEEEEECCCEEEEEECCHHHHHHHCCCEEEEECCCCCCHHHHHHEEEEC GDNEFRVLAFLNVSVLGVTDKRHGELQDISVIHVDDAVNAAKANPSIIRGFKVRLSRNIA CCCCEEEEEEEEEEEEEECCCCCCCCCCEEEEEECCCCCCCCCCCHHEEEEEEEEECCEE LEPAKSLDLAREIAGLAGLPLMVHISKTDISTDDILARLAPGDVVTHAFTGLEGGIVENG ECCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHCCCCHHHHHHHCCCCCCEECCC SVRPAAWEARERGVLFDIGHGRTQFDHGVARIALDEGFVPDFLGSDLSNGNQFGPAFDLP CCCCCHHHHHHCCEEEECCCCCCHHCCCEEEEEECCCCCCHHHCCCCCCCCCCCCCCCHH TVMAKMVTLGMPIQDVVAATTLRAAEFLGLRDEGYGAITVGRPAFVTVMEHLDHVDSLPD HHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHHCCCC ASGAELEVRRLEPLFAVNKGVVHDSDPWRGGQPEPPAEW CCCCEEEEECCCCHHHHCCCCEECCCCCCCCCCCCCCCC >Mature Secondary Structure TTKTHNTDKSVRYDLVLRGGRVFDTTIAPAPTVLDIAITDGRVATVAPHVDGVGTREID CCCCCCCCCCEEEEEEEECCEEEEEECCCCCEEEEEEEECCEEEEEECCCCCCCCCCCC CTDRVVTPGLLDVHVHCFEGMAMTIGMSSYDATLRRGVVGCVDTGTSGASNFRGFRRFAV CCCCCCCCCEEEEEEEECCCEEEEEECCHHHHHHHCCCEEEEECCCCCCHHHHHHEEEEC GDNEFRVLAFLNVSVLGVTDKRHGELQDISVIHVDDAVNAAKANPSIIRGFKVRLSRNIA CCCCEEEEEEEEEEEEEECCCCCCCCCCEEEEEECCCCCCCCCCCHHEEEEEEEEECCEE LEPAKSLDLAREIAGLAGLPLMVHISKTDISTDDILARLAPGDVVTHAFTGLEGGIVENG ECCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHCCCCHHHHHHHCCCCCCEECCC SVRPAAWEARERGVLFDIGHGRTQFDHGVARIALDEGFVPDFLGSDLSNGNQFGPAFDLP CCCCCHHHHHHCCEEEECCCCCCHHCCCEEEEEECCCCCCHHHCCCCCCCCCCCCCCCHH TVMAKMVTLGMPIQDVVAATTLRAAEFLGLRDEGYGAITVGRPAFVTVMEHLDHVDSLPD HHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHHCCCC ASGAELEVRRLEPLFAVNKGVVHDSDPWRGGQPEPPAEW CCCCEEEEECCCCHHHHCCCCEECCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA