| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is 158314466
Identifier: 158314466
GI number: 158314466
Start: 3116319
End: 3117899
Strand: Direct
Name: 158314466
Synonym: Franean1_2638
Alternate gene names: NA
Gene position: 3116319-3117899 (Clockwise)
Preceding gene: 158314441
Following gene: 158314469
Centisome position: 34.69
GC content: 70.46
Gene sequence:
>1581_bases ATGGCCACACCCAGCCACCGCGTCGAGCAGGAGGAGCTGCGGGCGCGGATGCGCGCGGTCGGTATGTCCCACGACGAGAT CGCGATCGAGTTCGCCCGCCGCTACCACTACCGTCTCCGTGCCGCTCACCGGGTCGCGCACGGCTGGACCCAGCAGCAGG CCGCAAACCACATCAACGCCCACGCCGCCCGCACCGGCCTCGACCCCCAGGGCACTGCCCCCATGACTGCCCCCCGGCTG TCGGAGCTGGAGAACTGGCCGCTACCGAACAACCGCCGCCGGCCCACCCCCCAGCTCCTCGCCCAACTCGCCGAGGTCTA CGACACCAGCATCCACAACCTCATCGACCTCGACGACCGCGAACACCTCACCCCCGCCGACACACTCCTCATAGCCCAGA TCCGCAAGGGCCTCCCACAGCCAACGCAGGACGGTTCCGCACCCGACGCCACCGCGATCAGCAGCCGGGGACCGCAGATC GATCTGCCTCGCATCGGACGCTCGCGTGTCCCTGCCGTTCCGATCGGTGTATGCGGCGCCGTCCCGACCGAGATCGACCC CGGTGCGGACATCGACGCGGACACGGCACTGCGCCGCGCGCACGAATGGCTGGTGACCGAACCACCGCAGGCCGTGGAGA CCCGCACGGGACGGCGGATCGGGGAGGCGTTCACCCGCAAGGTCGAGGGCCGCGTCGCACAACTGCGCCGCCTGGACGAC TTCGTTGGCGGCCGGGACCTGTATGAGCTGGTCGCGCGGGAAGTCGCCGCCACGACCGCCGTGCTCGACGACGCCGCCTA CGACGAGCATCTCGGACGTCGACTGCGGTCCGCTGTCGCGGAACTGTGCCAGCTCGCCGGCTGGGTCGCGATGGACGCCG GCCACACCCAGGCCGCGCGGCGCTTCTACCTCGACGGGGTGAAAGCCGCGCACGCCGCCGGCAACAGCCCGGTCGCGGCG AACCTGATCTCGACGTTGAGCTACCAGTTCGCCAACCAGCACGACCCGCGCACCGCCATCCTGCTGGCCCGCACCGCCCT GCGCGGAGCGGAGAACTCCGCGACGCCGGCCACCCTGGCACTGTTGTACGAACGCATCGCCTGGGCACACGCGAAAGCCG GCGACCGGTCCGCCACGGAGAAGGCACTCGCCGCCGTGGAGCGTCACTACGACCAGCGACGTCCCGACGACGAACCGACC TGGGTGTACTGGCTCGACGACAACGAGATCCAGGTGATGGCCGGCCGCTGCTACGTCGAACTCGGCCTCCCGCAGCACGC CGAGCCGCTGCTGGTCGACGCGGTCGCCCGCTGCGACGAAGACCACGCCCGCGAAGCCGCCCTTTACCGCTCCTGGCTCG CCGAGGCGTACCTGCAGACAGGCGACATCGGCCGGGCCGTCGAAGAAGCCACGCATGTCGTCCGGCTCGACGCCCGCGCC GGATCAGCACGCACCTCCGACCGGGTCCAACACCTGCGAGCCGGCCTCGCCGCGTTTCGCACCGACCCGGCAGTCCGCGC CTTCGAGGACCTCTACCAATCCGAAGCGGATCTTCCAAGCAACCTGCGTCGACCGAACTGA
Upstream 100 bases:
>100_bases TAACGGCCCCTACACACCGAGACGTGATCGATTCACTACCGTGGACATGCCAGCGGAATCGCGAGAGCACACGCTGTCAG GGAAGGGGTGCCTTACCGTC
Downstream 100 bases:
>100_bases CCGGCTCGTCTGCGGTCGACGGCGCGGCGAAAACGTCGCGCGATCCGCCGAGCCACGCAACATCCACCGGCAGGATCACT ACCGGGTGCAGCCAGCAGAG
Product: hypothetical protein
Products: NA
Alternate protein names: ORF1590 and ORF1422 [H]
Number of amino acids: Translated: 526; Mature: 525
Protein sequence:
>526_residues MATPSHRVEQEELRARMRAVGMSHDEIAIEFARRYHYRLRAAHRVAHGWTQQQAANHINAHAARTGLDPQGTAPMTAPRL SELENWPLPNNRRRPTPQLLAQLAEVYDTSIHNLIDLDDREHLTPADTLLIAQIRKGLPQPTQDGSAPDATAISSRGPQI DLPRIGRSRVPAVPIGVCGAVPTEIDPGADIDADTALRRAHEWLVTEPPQAVETRTGRRIGEAFTRKVEGRVAQLRRLDD FVGGRDLYELVAREVAATTAVLDDAAYDEHLGRRLRSAVAELCQLAGWVAMDAGHTQAARRFYLDGVKAAHAAGNSPVAA NLISTLSYQFANQHDPRTAILLARTALRGAENSATPATLALLYERIAWAHAKAGDRSATEKALAAVERHYDQRRPDDEPT WVYWLDDNEIQVMAGRCYVELGLPQHAEPLLVDAVARCDEDHAREAALYRSWLAEAYLQTGDIGRAVEEATHVVRLDARA GSARTSDRVQHLRAGLAAFRTDPAVRAFEDLYQSEADLPSNLRRPN
Sequences:
>Translated_526_residues MATPSHRVEQEELRARMRAVGMSHDEIAIEFARRYHYRLRAAHRVAHGWTQQQAANHINAHAARTGLDPQGTAPMTAPRL SELENWPLPNNRRRPTPQLLAQLAEVYDTSIHNLIDLDDREHLTPADTLLIAQIRKGLPQPTQDGSAPDATAISSRGPQI DLPRIGRSRVPAVPIGVCGAVPTEIDPGADIDADTALRRAHEWLVTEPPQAVETRTGRRIGEAFTRKVEGRVAQLRRLDD FVGGRDLYELVAREVAATTAVLDDAAYDEHLGRRLRSAVAELCQLAGWVAMDAGHTQAARRFYLDGVKAAHAAGNSPVAA NLISTLSYQFANQHDPRTAILLARTALRGAENSATPATLALLYERIAWAHAKAGDRSATEKALAAVERHYDQRRPDDEPT WVYWLDDNEIQVMAGRCYVELGLPQHAEPLLVDAVARCDEDHAREAALYRSWLAEAYLQTGDIGRAVEEATHVVRLDARA GSARTSDRVQHLRAGLAAFRTDPAVRAFEDLYQSEADLPSNLRRPN >Mature_525_residues ATPSHRVEQEELRARMRAVGMSHDEIAIEFARRYHYRLRAAHRVAHGWTQQQAANHINAHAARTGLDPQGTAPMTAPRLS ELENWPLPNNRRRPTPQLLAQLAEVYDTSIHNLIDLDDREHLTPADTLLIAQIRKGLPQPTQDGSAPDATAISSRGPQID LPRIGRSRVPAVPIGVCGAVPTEIDPGADIDADTALRRAHEWLVTEPPQAVETRTGRRIGEAFTRKVEGRVAQLRRLDDF VGGRDLYELVAREVAATTAVLDDAAYDEHLGRRLRSAVAELCQLAGWVAMDAGHTQAARRFYLDGVKAAHAAGNSPVAAN LISTLSYQFANQHDPRTAILLARTALRGAENSATPATLALLYERIAWAHAKAGDRSATEKALAAVERHYDQRRPDDEPTW VYWLDDNEIQVMAGRCYVELGLPQHAEPLLVDAVARCDEDHAREAALYRSWLAEAYLQTGDIGRAVEEATHVVRLDARAG SARTSDRVQHLRAGLAAFRTDPAVRAFEDLYQSEADLPSNLRRPN
Specific function: Might be a catalyst/regulator pair of proteins involved in the temporal controlled sporulation process. The decrease in level of the smaller protein early in sporulation may relieve negative regulation of the activity of the larger protein [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 58123; Mature: 57992
Theoretical pI: Translated: 6.60; Mature: 6.60
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MATPSHRVEQEELRARMRAVGMSHDEIAIEFARRYHYRLRAAHRVAHGWTQQQAANHINA CCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH HAARTGLDPQGTAPMTAPRLSELENWPLPNNRRRPTPQLLAQLAEVYDTSIHNLIDLDDR HHHHCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC EHLTPADTLLIAQIRKGLPQPTQDGSAPDATAISSRGPQIDLPRIGRSRVPAVPIGVCGA CCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCHHCCC VPTEIDPGADIDADTALRRAHEWLVTEPPQAVETRTGRRIGEAFTRKVEGRVAQLRRLDD CCCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH FVGGRDLYELVAREVAATTAVLDDAAYDEHLGRRLRSAVAELCQLAGWVAMDAGHTQAAR HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH RFYLDGVKAAHAAGNSPVAANLISTLSYQFANQHDPRTAILLARTALRGAENSATPATLA HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCHHHHH LLYERIAWAHAKAGDRSATEKALAAVERHYDQRRPDDEPTWVYWLDDNEIQVMAGRCYVE HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCEEEEECCEEEE LGLPQHAEPLLVDAVARCDEDHAREAALYRSWLAEAYLQTGDIGRAVEEATHVVRLDARA ECCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHEEEECCC GSARTSDRVQHLRAGLAAFRTDPAVRAFEDLYQSEADLPSNLRRPN CCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCC >Mature Secondary Structure ATPSHRVEQEELRARMRAVGMSHDEIAIEFARRYHYRLRAAHRVAHGWTQQQAANHINA CCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH HAARTGLDPQGTAPMTAPRLSELENWPLPNNRRRPTPQLLAQLAEVYDTSIHNLIDLDDR HHHHCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC EHLTPADTLLIAQIRKGLPQPTQDGSAPDATAISSRGPQIDLPRIGRSRVPAVPIGVCGA CCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCHHCCC VPTEIDPGADIDADTALRRAHEWLVTEPPQAVETRTGRRIGEAFTRKVEGRVAQLRRLDD CCCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH FVGGRDLYELVAREVAATTAVLDDAAYDEHLGRRLRSAVAELCQLAGWVAMDAGHTQAAR HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH RFYLDGVKAAHAAGNSPVAANLISTLSYQFANQHDPRTAILLARTALRGAENSATPATLA HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCHHHHH LLYERIAWAHAKAGDRSATEKALAAVERHYDQRRPDDEPTWVYWLDDNEIQVMAGRCYVE HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCEEEEECCEEEE LGLPQHAEPLLVDAVARCDEDHAREAALYRSWLAEAYLQTGDIGRAVEEATHVVRLDARA ECCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHEEEECCC GSARTSDRVQHLRAGLAAFRTDPAVRAFEDLYQSEADLPSNLRRPN CCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 2123814 [H]