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The map label for this gene is xerD [H]

Identifier: 158314469

GI number: 158314469

Start: 3120108

End: 3121241

Strand: Direct

Name: xerD [H]

Synonym: Franean1_2641

Alternate gene names: 158314469

Gene position: 3120108-3121241 (Clockwise)

Preceding gene: 158314466

Following gene: 158314470

Centisome position: 34.74

GC content: 66.23

Gene sequence:

>1134_bases
ATGGCGGCAGGCTGCGCCGTCATGCGGGATCGCGACGGGCTGGAGGGGTCAGCTCGGTTGGAGCTGGCTGCCGGGGTTCG
GCTGCTTCGTGCGGACGAGGCGGTGTTGCGGGCGATGCTGTCCGGCTGGGAGAAGCAGCAGATCGGCGGCCGGCGGCTGG
ACCCGCGCACGATCCACGCTCGCGCCCATGTCATCACGGGGTTTGTCGCGTTTACCAATGAGTATCCGTGGCGGTGGACT
GCGGGAATGGTGGACGAGTGGTCGACGTACCTCACCGCGGAACGCGGTCTGGCGGTGTCCACGGTCCGGCAGTACCAGGG
ATCGTTGCGGCTTTTCTGCGACTTCGTCACGTCGCCGTTCTACGGCTGGGTCGAGGAGTGCGAGACGAGGTTCGGTACGC
ATCCGGTGCAGGTCTGCCACGAGTGGAACACGGTGCTGCATCTCGCGGAGTACGAGGGCCGGCCCGGTAGGCGGCCGTTG
ACTCGCGAGGAGGTGCAGCTGCTGTTCGACTACGCCGATGACCGGGTCGATCAGGCCGTGCGCCGACGCCGGAAGGGGGC
GTTGCCTGCCTACCGGGACGCCACTGTCCTGAAAGTAATCTACGGATGGGGGCTGCGCTGCAATGAGGCGTCGCGGATCG
ATCTCGTGGATTTCTACCGGAATCCGAAAGCACCGGAGCTGGGTCGATTTGGGCTGTTGCACGTGCGCTACGGTAAAGGG
GCAAATGGGTCGGGTCCGCGGCGTCGGACGGTCGCGAGCGTGATGCCGTGGGCGGTGGAGGCGGTGGAAGACTTCGTTGA
CAATGTTCGGCCCCGGATGGGCTCACGGGAGCATCCGGCGTTGTGGGTGACCGAGCGGGGTGGCCGGCTGAAACCTCGGG
AAATCGAGGAACGTTTCGCGGCCTACCGCGACGCGCTGGCGCTGCCGACAGAGTTGACACCGCACTGCCTGCGCCATTCC
TACGTGACGCACTTGATCGAGGACGGCGCGGACCCAAAGTTCGTACAGGAGCAGGTGGGCCACCGGTACGCGTCCACGCT
GGGGATCTACACCCACGTCAGCGAAGGGTTCATGAACGCCATGATGCGAACGGCGCTGGAGACCGCGTTCGCGGCGGGCG
GGGAGTTCCGGTGA

Upstream 100 bases:

>100_bases
AGACACGGGTGATCTTAACTCGTGGAGCCTGCGCTCGACGTGTGGTCCGACCTGGTTCTTTGCGGCGGCGCGTGCGTCTG
ATGCGTGATTCGAGCGTCAG

Downstream 100 bases:

>100_bases
CGGCGAAGCTGGACTACCGCTGGCGGCTGCGGGAGGTGATGGCGGGCCACGGCATGTTCTCCACAACCGATCTCGGCCCG
CTGTTGGCGCAGCGAGGCAT

Product: integrase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 377; Mature: 376

Protein sequence:

>377_residues
MAAGCAVMRDRDGLEGSARLELAAGVRLLRADEAVLRAMLSGWEKQQIGGRRLDPRTIHARAHVITGFVAFTNEYPWRWT
AGMVDEWSTYLTAERGLAVSTVRQYQGSLRLFCDFVTSPFYGWVEECETRFGTHPVQVCHEWNTVLHLAEYEGRPGRRPL
TREEVQLLFDYADDRVDQAVRRRRKGALPAYRDATVLKVIYGWGLRCNEASRIDLVDFYRNPKAPELGRFGLLHVRYGKG
ANGSGPRRRTVASVMPWAVEAVEDFVDNVRPRMGSREHPALWVTERGGRLKPREIEERFAAYRDALALPTELTPHCLRHS
YVTHLIEDGADPKFVQEQVGHRYASTLGIYTHVSEGFMNAMMRTALETAFAAGGEFR

Sequences:

>Translated_377_residues
MAAGCAVMRDRDGLEGSARLELAAGVRLLRADEAVLRAMLSGWEKQQIGGRRLDPRTIHARAHVITGFVAFTNEYPWRWT
AGMVDEWSTYLTAERGLAVSTVRQYQGSLRLFCDFVTSPFYGWVEECETRFGTHPVQVCHEWNTVLHLAEYEGRPGRRPL
TREEVQLLFDYADDRVDQAVRRRRKGALPAYRDATVLKVIYGWGLRCNEASRIDLVDFYRNPKAPELGRFGLLHVRYGKG
ANGSGPRRRTVASVMPWAVEAVEDFVDNVRPRMGSREHPALWVTERGGRLKPREIEERFAAYRDALALPTELTPHCLRHS
YVTHLIEDGADPKFVQEQVGHRYASTLGIYTHVSEGFMNAMMRTALETAFAAGGEFR
>Mature_376_residues
AAGCAVMRDRDGLEGSARLELAAGVRLLRADEAVLRAMLSGWEKQQIGGRRLDPRTIHARAHVITGFVAFTNEYPWRWTA
GMVDEWSTYLTAERGLAVSTVRQYQGSLRLFCDFVTSPFYGWVEECETRFGTHPVQVCHEWNTVLHLAEYEGRPGRRPLT
REEVQLLFDYADDRVDQAVRRRRKGALPAYRDATVLKVIYGWGLRCNEASRIDLVDFYRNPKAPELGRFGLLHVRYGKGA
NGSGPRRRTVASVMPWAVEAVEDFVDNVRPRMGSREHPALWVTERGGRLKPREIEERFAAYRDALALPTELTPHCLRHSY
VTHLIEDGADPKFVQEQVGHRYASTLGIYTHVSEGFMNAMMRTALETAFAAGGEFR

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: COG4974

COG function: function code L; Site-specific recombinase XerD

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790244, Length=164, Percent_Identity=34.1463414634146, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI1789261, Length=168, Percent_Identity=30.952380952381, Blast_Score=65, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107
- InterPro:   IPR011932 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 42829; Mature: 42698

Theoretical pI: Translated: 8.56; Mature: 8.56

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAAGCAVMRDRDGLEGSARLELAAGVRLLRADEAVLRAMLSGWEKQQIGGRRLDPRTIHA
CCCCCCHHCCCCCCCCCCEEEHHHCHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCHHHHH
RAHVITGFVAFTNEYPWRWTAGMVDEWSTYLTAERGLAVSTVRQYQGSLRLFCDFVTSPF
HHHHHHHHHHHCCCCCCEEECCCHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHCCCH
YGWVEECETRFGTHPVQVCHEWNTVLHLAEYEGRPGRRPLTREEVQLLFDYADDRVDQAV
HHHHHHHHHHHCCCHHHHHHHHHHHEEEHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
RRRRKGALPAYRDATVLKVIYGWGLRCNEASRIDLVDFYRNPKAPELGRFGLLHVRYGKG
HHHHHCCCCCCCCHHHHHHHHHCCCEECCCCCCCHHHHHCCCCCCCCCCEEEEEEEECCC
ANGSGPRRRTVASVMPWAVEAVEDFVDNVRPRMGSREHPALWVTERGGRLKPREIEERFA
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCHHHHHHHHH
AYRDALALPTELTPHCLRHSYVTHLIEDGADPKFVQEQVGHRYASTLGIYTHVSEGFMNA
HHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MMRTALETAFAAGGEFR
HHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
AAGCAVMRDRDGLEGSARLELAAGVRLLRADEAVLRAMLSGWEKQQIGGRRLDPRTIHA
CCCCCHHCCCCCCCCCCEEEHHHCHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCHHHHH
RAHVITGFVAFTNEYPWRWTAGMVDEWSTYLTAERGLAVSTVRQYQGSLRLFCDFVTSPF
HHHHHHHHHHHCCCCCCEEECCCHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHCCCH
YGWVEECETRFGTHPVQVCHEWNTVLHLAEYEGRPGRRPLTREEVQLLFDYADDRVDQAV
HHHHHHHHHHHCCCHHHHHHHHHHHEEEHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
RRRRKGALPAYRDATVLKVIYGWGLRCNEASRIDLVDFYRNPKAPELGRFGLLHVRYGKG
HHHHHCCCCCCCCHHHHHHHHHCCCEECCCCCCCHHHHHCCCCCCCCCCEEEEEEEECCC
ANGSGPRRRTVASVMPWAVEAVEDFVDNVRPRMGSREHPALWVTERGGRLKPREIEERFA
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCHHHHHHHHH
AYRDALALPTELTPHCLRHSYVTHLIEDGADPKFVQEQVGHRYASTLGIYTHVSEGFMNA
HHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MMRTALETAFAAGGEFR
HHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12840036 [H]