| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is brpA [H]
Identifier: 158314218
GI number: 158314218
Start: 2843681
End: 2844679
Strand: Direct
Name: brpA [H]
Synonym: Franean1_2388
Alternate gene names: 158314218
Gene position: 2843681-2844679 (Clockwise)
Preceding gene: 158314217
Following gene: 158314219
Centisome position: 31.66
GC content: 71.67
Gene sequence:
>999_bases TTGCTGGAGCTTCTTGGTCTCGACGACGTCACGCTGTCGGCCTACCGGTTGTGGCTGAGACATCCCGACATGGATGTCGA CGGGGTGGCCACGGCGGTGGGGCAGGCGAACGACACAGTCCGCCGGTCACGGGACCGGCTCGTCGAGCTGTCACTGCTGT TGCCCTCCACCGAACACCCCGGCCACCTGGTCGCCGTCCACCCGGAGGCCGGTCTGGAGCATCTGCTCCAGGCTCAGCAC GAGGCACTCATCCGCCGCCACGAGCGGCTTGTCCGGGCACGGGCGCAGGTGAGCACGTTCGTCTCGGAGTACCTGGACAA CCGGCCCGGTGGGGACGGCGCGGAGGTCGAGCACATCGACAGCGCCGACCAGGCCCGGGCCGAACTGCTCACCCTTGTCG GCCGGGCCGAGAAGGAGGTGCTCGCGCTGCACACCCGGCGCGGCCGCCCGCCGGCGTTGACCGCGGAGGTTCTCCCGGTC GAGCTGCGGGCGCTGCAGCGCGGTGTGGCGATGCGCAGCGTCCTCCCACGCACGGTCAGCACCGACGAGACGGGTGTCGG CTACGTCCGCACGGTCGCCTCGCACGGCCTGGAGGCCCGGCTCGCCGACGACCCGCGCATCGACGCGACGACCGTGGACG GCCGGGTCGGGCTGGTGCAGTTCGTGCAGCACGGCACCGACCCGCACGCGCTGATCGTGCGCTCGCCCGCGCTGGCGAAC CTGGTCACCATGCTGTTCGAGCAGGTCTGGGACAGCGCCGAGCCGCTGGCCGCGGAGGCCGACGGCGACCTGGAGAGCCC TGCGGACGACCGGCCGAACGACACCGAGCGGCTGCTTTTAAGGCTGCTCAGCCTGGGTGTGAAGGACGAGGCAGCGGCCC GCCATCTCGGGGTGTCCGTCCGTACGGTGCGTCGGATGGTCGCCGACCTCATGACCCGCCTGGACGCCCGTAGCCGCTTT CAGGCCGGGACGGTCGCGGCCCGGCGGGGTTGGTTGTAG
Upstream 100 bases:
>100_bases AGAGCCAGCGACCGGGACTGCCGACCGGCTCACGGTGAACGACACCGCGCGTGCCGCCCCAGCGCCCGCGGACCATCCGC TTCGACCTGGGAAGGGGATC
Downstream 100 bases:
>100_bases CCGCGTTGTGATCAGTTGGTCGGATCGTTGGCAGTAGATGGTCAGGGCAACTTCCTGCCACCCGGAATGCCGGACAGAAG TTCCGATGGGCCGCATGATT
Product: LuxR family transcriptional regulator
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 332; Mature: 332
Protein sequence:
>332_residues MLELLGLDDVTLSAYRLWLRHPDMDVDGVATAVGQANDTVRRSRDRLVELSLLLPSTEHPGHLVAVHPEAGLEHLLQAQH EALIRRHERLVRARAQVSTFVSEYLDNRPGGDGAEVEHIDSADQARAELLTLVGRAEKEVLALHTRRGRPPALTAEVLPV ELRALQRGVAMRSVLPRTVSTDETGVGYVRTVASHGLEARLADDPRIDATTVDGRVGLVQFVQHGTDPHALIVRSPALAN LVTMLFEQVWDSAEPLAAEADGDLESPADDRPNDTERLLLRLLSLGVKDEAAARHLGVSVRTVRRMVADLMTRLDARSRF QAGTVAARRGWL
Sequences:
>Translated_332_residues MLELLGLDDVTLSAYRLWLRHPDMDVDGVATAVGQANDTVRRSRDRLVELSLLLPSTEHPGHLVAVHPEAGLEHLLQAQH EALIRRHERLVRARAQVSTFVSEYLDNRPGGDGAEVEHIDSADQARAELLTLVGRAEKEVLALHTRRGRPPALTAEVLPV ELRALQRGVAMRSVLPRTVSTDETGVGYVRTVASHGLEARLADDPRIDATTVDGRVGLVQFVQHGTDPHALIVRSPALAN LVTMLFEQVWDSAEPLAAEADGDLESPADDRPNDTERLLLRLLSLGVKDEAAARHLGVSVRTVRRMVADLMTRLDARSRF QAGTVAARRGWL >Mature_332_residues MLELLGLDDVTLSAYRLWLRHPDMDVDGVATAVGQANDTVRRSRDRLVELSLLLPSTEHPGHLVAVHPEAGLEHLLQAQH EALIRRHERLVRARAQVSTFVSEYLDNRPGGDGAEVEHIDSADQARAELLTLVGRAEKEVLALHTRRGRPPALTAEVLPV ELRALQRGVAMRSVLPRTVSTDETGVGYVRTVASHGLEARLADDPRIDATTVDGRVGLVQFVQHGTDPHALIVRSPALAN LVTMLFEQVWDSAEPLAAEADGDLESPADDRPNDTERLLLRLLSLGVKDEAAARHLGVSVRTVRRMVADLMTRLDARSRF QAGTVAARRGWL
Specific function: Involved in the regulation of the bialaphos biosynthetic pathway [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 HTH luxR-type DNA-binding domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR016032 - InterPro: IPR000792 - InterPro: IPR011991 [H]
Pfam domain/function: PF00196 GerE [H]
EC number: NA
Molecular weight: Translated: 36441; Mature: 36441
Theoretical pI: Translated: 6.20; Mature: 6.20
Prosite motif: PS50043 HTH_LUXR_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLELLGLDDVTLSAYRLWLRHPDMDVDGVATAVGQANDTVRRSRDRLVELSLLLPSTEHP CCEECCCCCHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHEEHHEECCCCCCC GHLVAVHPEAGLEHLLQAQHEALIRRHERLVRARAQVSTFVSEYLDNRPGGDGAEVEHID CCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHCC SADQARAELLTLVGRAEKEVLALHTRRGRPPALTAEVLPVELRALQRGVAMRSVLPRTVS CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCC TDETGVGYVRTVASHGLEARLADDPRIDATTVDGRVGLVQFVQHGTDPHALIVRSPALAN CCCCCCHHHHHHHHCCCEEEECCCCCCCCEECCCHHHHHHHHHCCCCCCEEEEECCHHHH LVTMLFEQVWDSAEPLAAEADGDLESPADDRPNDTERLLLRLLSLGVKDEAAARHLGVSV HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHCHHH RTVRRMVADLMTRLDARSRFQAGTVAARRGWL HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure MLELLGLDDVTLSAYRLWLRHPDMDVDGVATAVGQANDTVRRSRDRLVELSLLLPSTEHP CCEECCCCCHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHEEHHEECCCCCCC GHLVAVHPEAGLEHLLQAQHEALIRRHERLVRARAQVSTFVSEYLDNRPGGDGAEVEHID CCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHCC SADQARAELLTLVGRAEKEVLALHTRRGRPPALTAEVLPVELRALQRGVAMRSVLPRTVS CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCC TDETGVGYVRTVASHGLEARLADDPRIDATTVDGRVGLVQFVQHGTDPHALIVRSPALAN CCCCCCHHHHHHHHCCCEEEECCCCCCCCEECCCHHHHHHHHHCCCCCCEEEEECCHHHH LVTMLFEQVWDSAEPLAAEADGDLESPADDRPNDTERLLLRLLSLGVKDEAAARHLGVSV HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHCHHH RTVRRMVADLMTRLDARSRFQAGTVAARRGWL HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 2066341 [H]