| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is ybeZ [C]
Identifier: 158313946
GI number: 158313946
Start: 2538688
End: 2539752
Strand: Direct
Name: ybeZ [C]
Synonym: Franean1_2112
Alternate gene names: 158313946
Gene position: 2538688-2539752 (Clockwise)
Preceding gene: 158313945
Following gene: 158313947
Centisome position: 28.26
GC content: 68.64
Gene sequence:
>1065_bases GTGCTCCGGCCCAGGCGGCCGTACTACATGCCCGAATCCGACACCCCACCCGGCTCCCGGGTCACCACACGCATCGTCGT CCCCGACGGGCACAGCATGGTGAGCCTGCTCGGGCACCAGGACCAGCTTCTGCGTGTGATCGAGAAGGCCTTCTCCTCTG ACATCCACGTCCGCGGCAACGAGATCACGATCACGGGTGACCCGGCGGAGAACGAGCTGGCCGCCAGGTTGTTCTCCGAG CTCGTCGCGCTGCTTGACGCAGGCACCGAGATCAGCCCGCAGCACGTCGACCACTCGGTGGCGATGCTGCGCAGCGGCGC GGGGGAGCGGCCTGCCGAGGTGCTCACCCTCAACATCCTGTCCAACCGTGGTCGGACGATCCGTCCCAAGACGCTGAACC AGAAGCGGTACGTGGACGCGATCGACCAGCACACGATCGTGTTCGGGATCGGCCCGGCGGGCACCGGCAAGACCTACCTG GCGATGGCCAAGGCCGTGCAGGCGCTGCAGGCGAAGAAGGCCAACCGGATCATCCTCACCCGGCCGGCGGTCGAGGCGGG TGAGCGGCTCGGCTTCCTGCCCGGGACGCTCTACGAGAAGATCGACCCGTACCTGCGTCCGCTCTACGACGCGCTGCACG ACATGATCGACCCCGACTCGATCCCGCGGCTCATGCAGAGCGGCACCATCGAGGTCGCGCCGCTGGCGTACATGCGCGGC CGTACGCTCAACGACGCCTTCATCATCCTGGACGAGGCGCAGAACACCTCGGCCGAGCAGATGAAGATGTTCCTGACCCG CCTCGGCTTCGGGTCCAAGATCGTGGTGACCGGTGACGTCACCCAGGTCGACCTGCCCAGTGGCACGCAGAGTGGCCTGC GAGTGGTCCGCGAGATCCTGGACGGCGTCGCCGACGTCCACTTCGCGACCCTGACCAGCACGGACGTCGTCCGGCACCGG CTGGTCAGCGACATCGTCGACGCCTACGCGCGCTGGGACGCGGCGAGCCCGGCACCGAGCACGGACACGCGCCCCACGCG GGCGGCCCGCCGGGACCGCCGATGA
Upstream 100 bases:
>100_bases GCAGTTTCGACCTGGTCCTCGGTGGCCGAGGCATGGATCCGACGGTCCCGCGGCGTTACCGCCTTCTGAGGGCGACCTTC GTCCCAGGTTGAAGCGAGAG
Downstream 100 bases:
>100_bases GCGCCGGTGCCGCCGCCGTGGCTCCCGCCCCGGCGGCGGGAAGGGTTCTCTGATGGCCGTCTTCGTCGCCAACGAGTCGG GCGTGACGGACTTCGACGAG
Product: PhoH family protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 354; Mature: 354
Protein sequence:
>354_residues MLRPRRPYYMPESDTPPGSRVTTRIVVPDGHSMVSLLGHQDQLLRVIEKAFSSDIHVRGNEITITGDPAENELAARLFSE LVALLDAGTEISPQHVDHSVAMLRSGAGERPAEVLTLNILSNRGRTIRPKTLNQKRYVDAIDQHTIVFGIGPAGTGKTYL AMAKAVQALQAKKANRIILTRPAVEAGERLGFLPGTLYEKIDPYLRPLYDALHDMIDPDSIPRLMQSGTIEVAPLAYMRG RTLNDAFIILDEAQNTSAEQMKMFLTRLGFGSKIVVTGDVTQVDLPSGTQSGLRVVREILDGVADVHFATLTSTDVVRHR LVSDIVDAYARWDAASPAPSTDTRPTRAARRDRR
Sequences:
>Translated_354_residues MLRPRRPYYMPESDTPPGSRVTTRIVVPDGHSMVSLLGHQDQLLRVIEKAFSSDIHVRGNEITITGDPAENELAARLFSE LVALLDAGTEISPQHVDHSVAMLRSGAGERPAEVLTLNILSNRGRTIRPKTLNQKRYVDAIDQHTIVFGIGPAGTGKTYL AMAKAVQALQAKKANRIILTRPAVEAGERLGFLPGTLYEKIDPYLRPLYDALHDMIDPDSIPRLMQSGTIEVAPLAYMRG RTLNDAFIILDEAQNTSAEQMKMFLTRLGFGSKIVVTGDVTQVDLPSGTQSGLRVVREILDGVADVHFATLTSTDVVRHR LVSDIVDAYARWDAASPAPSTDTRPTRAARRDRR >Mature_354_residues MLRPRRPYYMPESDTPPGSRVTTRIVVPDGHSMVSLLGHQDQLLRVIEKAFSSDIHVRGNEITITGDPAENELAARLFSE LVALLDAGTEISPQHVDHSVAMLRSGAGERPAEVLTLNILSNRGRTIRPKTLNQKRYVDAIDQHTIVFGIGPAGTGKTYL AMAKAVQALQAKKANRIILTRPAVEAGERLGFLPGTLYEKIDPYLRPLYDALHDMIDPDSIPRLMQSGTIEVAPLAYMRG RTLNDAFIILDEAQNTSAEQMKMFLTRLGFGSKIVVTGDVTQVDLPSGTQSGLRVVREILDGVADVHFATLTSTDVVRHR LVSDIVDAYARWDAASPAPSTDTRPTRAARRDRR
Specific function: Unknown
COG id: COG1702
COG function: function code T; Phosphate starvation-inducible protein PhoH, predicted ATPase
Gene ontology:
Cell location: Cytoplasm (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the phoH family [H]
Homologues:
Organism=Escherichia coli, GI145693103, Length=315, Percent_Identity=48.8888888888889, Blast_Score=282, Evalue=2e-77, Organism=Escherichia coli, GI1787257, Length=199, Percent_Identity=45.2261306532663, Blast_Score=177, Evalue=1e-45,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004087 - InterPro: IPR003714 [H]
Pfam domain/function: PF02562 PhoH [H]
EC number: NA
Molecular weight: Translated: 38949; Mature: 38949
Theoretical pI: Translated: 8.74; Mature: 8.74
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLRPRRPYYMPESDTPPGSRVTTRIVVPDGHSMVSLLGHQDQLLRVIEKAFSSDIHVRGN CCCCCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHCCHHHHHHHHHHHHCCCEEEECC EITITGDPAENELAARLFSELVALLDAGTEISPQHVDHSVAMLRSGAGERPAEVLTLNIL EEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCHHEEEEEEE SNRGRTIRPKTLNQKRYVDAIDQHTIVFGIGPAGTGKTYLAMAKAVQALQAKKANRIILT CCCCCEECCCCCCHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEE RPAVEAGERLGFLPGTLYEKIDPYLRPLYDALHDMIDPDSIPRLMQSGTIEVAPLAYMRG CCCHHHHHHCCCCCCHHHHHHCHHHHHHHHHHHHHCCCHHHHHHHHCCCEEEEEHHHHCC RTLNDAFIILDEAQNTSAEQMKMFLTRLGFGSKIVVTGDVTQVDLPSGTQSGLRVVREIL CCCCCEEEEEECCCCCCHHHHHHHHHHCCCCCEEEEECCCEEEECCCCCHHHHHHHHHHH DGVADVHFATLTSTDVVRHRLVSDIVDAYARWDAASPAPSTDTRPTRAARRDRR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHCCCC >Mature Secondary Structure MLRPRRPYYMPESDTPPGSRVTTRIVVPDGHSMVSLLGHQDQLLRVIEKAFSSDIHVRGN CCCCCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHCCHHHHHHHHHHHHCCCEEEECC EITITGDPAENELAARLFSELVALLDAGTEISPQHVDHSVAMLRSGAGERPAEVLTLNIL EEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCHHEEEEEEE SNRGRTIRPKTLNQKRYVDAIDQHTIVFGIGPAGTGKTYLAMAKAVQALQAKKANRIILT CCCCCEECCCCCCHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEE RPAVEAGERLGFLPGTLYEKIDPYLRPLYDALHDMIDPDSIPRLMQSGTIEVAPLAYMRG CCCHHHHHHCCCCCCHHHHHHCHHHHHHHHHHHHHCCCHHHHHHHHCCCEEEEEHHHHCC RTLNDAFIILDEAQNTSAEQMKMFLTRLGFGSKIVVTGDVTQVDLPSGTQSGLRVVREIL CCCCCEEEEEECCCCCCHHHHHHHHHHCCCCCEEEEECCCEEEECCCCCHHHHHHHHHHH DGVADVHFATLTSTDVVRHRLVSDIVDAYARWDAASPAPSTDTRPTRAARRDRR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 12788972 [H]