Definition Frankia sp. EAN1pec chromosome, complete genome.
Accession NC_009921
Length 8,982,042

Click here to switch to the map view.

The map label for this gene is ybeZ [C]

Identifier: 158313946

GI number: 158313946

Start: 2538688

End: 2539752

Strand: Direct

Name: ybeZ [C]

Synonym: Franean1_2112

Alternate gene names: 158313946

Gene position: 2538688-2539752 (Clockwise)

Preceding gene: 158313945

Following gene: 158313947

Centisome position: 28.26

GC content: 68.64

Gene sequence:

>1065_bases
GTGCTCCGGCCCAGGCGGCCGTACTACATGCCCGAATCCGACACCCCACCCGGCTCCCGGGTCACCACACGCATCGTCGT
CCCCGACGGGCACAGCATGGTGAGCCTGCTCGGGCACCAGGACCAGCTTCTGCGTGTGATCGAGAAGGCCTTCTCCTCTG
ACATCCACGTCCGCGGCAACGAGATCACGATCACGGGTGACCCGGCGGAGAACGAGCTGGCCGCCAGGTTGTTCTCCGAG
CTCGTCGCGCTGCTTGACGCAGGCACCGAGATCAGCCCGCAGCACGTCGACCACTCGGTGGCGATGCTGCGCAGCGGCGC
GGGGGAGCGGCCTGCCGAGGTGCTCACCCTCAACATCCTGTCCAACCGTGGTCGGACGATCCGTCCCAAGACGCTGAACC
AGAAGCGGTACGTGGACGCGATCGACCAGCACACGATCGTGTTCGGGATCGGCCCGGCGGGCACCGGCAAGACCTACCTG
GCGATGGCCAAGGCCGTGCAGGCGCTGCAGGCGAAGAAGGCCAACCGGATCATCCTCACCCGGCCGGCGGTCGAGGCGGG
TGAGCGGCTCGGCTTCCTGCCCGGGACGCTCTACGAGAAGATCGACCCGTACCTGCGTCCGCTCTACGACGCGCTGCACG
ACATGATCGACCCCGACTCGATCCCGCGGCTCATGCAGAGCGGCACCATCGAGGTCGCGCCGCTGGCGTACATGCGCGGC
CGTACGCTCAACGACGCCTTCATCATCCTGGACGAGGCGCAGAACACCTCGGCCGAGCAGATGAAGATGTTCCTGACCCG
CCTCGGCTTCGGGTCCAAGATCGTGGTGACCGGTGACGTCACCCAGGTCGACCTGCCCAGTGGCACGCAGAGTGGCCTGC
GAGTGGTCCGCGAGATCCTGGACGGCGTCGCCGACGTCCACTTCGCGACCCTGACCAGCACGGACGTCGTCCGGCACCGG
CTGGTCAGCGACATCGTCGACGCCTACGCGCGCTGGGACGCGGCGAGCCCGGCACCGAGCACGGACACGCGCCCCACGCG
GGCGGCCCGCCGGGACCGCCGATGA

Upstream 100 bases:

>100_bases
GCAGTTTCGACCTGGTCCTCGGTGGCCGAGGCATGGATCCGACGGTCCCGCGGCGTTACCGCCTTCTGAGGGCGACCTTC
GTCCCAGGTTGAAGCGAGAG

Downstream 100 bases:

>100_bases
GCGCCGGTGCCGCCGCCGTGGCTCCCGCCCCGGCGGCGGGAAGGGTTCTCTGATGGCCGTCTTCGTCGCCAACGAGTCGG
GCGTGACGGACTTCGACGAG

Product: PhoH family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 354; Mature: 354

Protein sequence:

>354_residues
MLRPRRPYYMPESDTPPGSRVTTRIVVPDGHSMVSLLGHQDQLLRVIEKAFSSDIHVRGNEITITGDPAENELAARLFSE
LVALLDAGTEISPQHVDHSVAMLRSGAGERPAEVLTLNILSNRGRTIRPKTLNQKRYVDAIDQHTIVFGIGPAGTGKTYL
AMAKAVQALQAKKANRIILTRPAVEAGERLGFLPGTLYEKIDPYLRPLYDALHDMIDPDSIPRLMQSGTIEVAPLAYMRG
RTLNDAFIILDEAQNTSAEQMKMFLTRLGFGSKIVVTGDVTQVDLPSGTQSGLRVVREILDGVADVHFATLTSTDVVRHR
LVSDIVDAYARWDAASPAPSTDTRPTRAARRDRR

Sequences:

>Translated_354_residues
MLRPRRPYYMPESDTPPGSRVTTRIVVPDGHSMVSLLGHQDQLLRVIEKAFSSDIHVRGNEITITGDPAENELAARLFSE
LVALLDAGTEISPQHVDHSVAMLRSGAGERPAEVLTLNILSNRGRTIRPKTLNQKRYVDAIDQHTIVFGIGPAGTGKTYL
AMAKAVQALQAKKANRIILTRPAVEAGERLGFLPGTLYEKIDPYLRPLYDALHDMIDPDSIPRLMQSGTIEVAPLAYMRG
RTLNDAFIILDEAQNTSAEQMKMFLTRLGFGSKIVVTGDVTQVDLPSGTQSGLRVVREILDGVADVHFATLTSTDVVRHR
LVSDIVDAYARWDAASPAPSTDTRPTRAARRDRR
>Mature_354_residues
MLRPRRPYYMPESDTPPGSRVTTRIVVPDGHSMVSLLGHQDQLLRVIEKAFSSDIHVRGNEITITGDPAENELAARLFSE
LVALLDAGTEISPQHVDHSVAMLRSGAGERPAEVLTLNILSNRGRTIRPKTLNQKRYVDAIDQHTIVFGIGPAGTGKTYL
AMAKAVQALQAKKANRIILTRPAVEAGERLGFLPGTLYEKIDPYLRPLYDALHDMIDPDSIPRLMQSGTIEVAPLAYMRG
RTLNDAFIILDEAQNTSAEQMKMFLTRLGFGSKIVVTGDVTQVDLPSGTQSGLRVVREILDGVADVHFATLTSTDVVRHR
LVSDIVDAYARWDAASPAPSTDTRPTRAARRDRR

Specific function: Unknown

COG id: COG1702

COG function: function code T; Phosphate starvation-inducible protein PhoH, predicted ATPase

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phoH family [H]

Homologues:

Organism=Escherichia coli, GI145693103, Length=315, Percent_Identity=48.8888888888889, Blast_Score=282, Evalue=2e-77,
Organism=Escherichia coli, GI1787257, Length=199, Percent_Identity=45.2261306532663, Blast_Score=177, Evalue=1e-45,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004087
- InterPro:   IPR003714 [H]

Pfam domain/function: PF02562 PhoH [H]

EC number: NA

Molecular weight: Translated: 38949; Mature: 38949

Theoretical pI: Translated: 8.74; Mature: 8.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRPRRPYYMPESDTPPGSRVTTRIVVPDGHSMVSLLGHQDQLLRVIEKAFSSDIHVRGN
CCCCCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHCCHHHHHHHHHHHHCCCEEEECC
EITITGDPAENELAARLFSELVALLDAGTEISPQHVDHSVAMLRSGAGERPAEVLTLNIL
EEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCHHEEEEEEE
SNRGRTIRPKTLNQKRYVDAIDQHTIVFGIGPAGTGKTYLAMAKAVQALQAKKANRIILT
CCCCCEECCCCCCHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEE
RPAVEAGERLGFLPGTLYEKIDPYLRPLYDALHDMIDPDSIPRLMQSGTIEVAPLAYMRG
CCCHHHHHHCCCCCCHHHHHHCHHHHHHHHHHHHHCCCHHHHHHHHCCCEEEEEHHHHCC
RTLNDAFIILDEAQNTSAEQMKMFLTRLGFGSKIVVTGDVTQVDLPSGTQSGLRVVREIL
CCCCCEEEEEECCCCCCHHHHHHHHHHCCCCCEEEEECCCEEEECCCCCHHHHHHHHHHH
DGVADVHFATLTSTDVVRHRLVSDIVDAYARWDAASPAPSTDTRPTRAARRDRR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHCCCC
>Mature Secondary Structure
MLRPRRPYYMPESDTPPGSRVTTRIVVPDGHSMVSLLGHQDQLLRVIEKAFSSDIHVRGN
CCCCCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHCCHHHHHHHHHHHHCCCEEEECC
EITITGDPAENELAARLFSELVALLDAGTEISPQHVDHSVAMLRSGAGERPAEVLTLNIL
EEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCHHEEEEEEE
SNRGRTIRPKTLNQKRYVDAIDQHTIVFGIGPAGTGKTYLAMAKAVQALQAKKANRIILT
CCCCCEECCCCCCHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEE
RPAVEAGERLGFLPGTLYEKIDPYLRPLYDALHDMIDPDSIPRLMQSGTIEVAPLAYMRG
CCCHHHHHHCCCCCCHHHHHHCHHHHHHHHHHHHHCCCHHHHHHHHCCCEEEEEHHHHCC
RTLNDAFIILDEAQNTSAEQMKMFLTRLGFGSKIVVTGDVTQVDLPSGTQSGLRVVREIL
CCCCCEEEEEECCCCCCHHHHHHHHHHCCCCCEEEEECCCEEEECCCCCHHHHHHHHHHH
DGVADVHFATLTSTDVVRHRLVSDIVDAYARWDAASPAPSTDTRPTRAARRDRR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12788972 [H]