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The map label for this gene is ybeY [C]

Identifier: 158313947

GI number: 158313947

Start: 2539805

End: 2540284

Strand: Direct

Name: ybeY [C]

Synonym: Franean1_2113

Alternate gene names: 158313947

Gene position: 2539805-2540284 (Clockwise)

Preceding gene: 158313946

Following gene: 158313948

Centisome position: 28.28

GC content: 69.79

Gene sequence:

>480_bases
ATGGCCGTCTTCGTCGCCAACGAGTCGGGCGTGACGGACTTCGACGAGGTCACGCTGGCCGCGCTCGCCCGTTTCGTGCT
CGACACGATGAAGGTCAACCCGTTGGCGGAGCTCTCGGTCATGCTCGTCGAGATCGACGCGATGACCGACCTGCACGTGC
GCTACATGGCCGAGGAGGGCCCGACCGACGTGCTCGCCTTCCCGCAGGACGAGGCGTTCGAGCCGTCGTGGTCGGAGTCG
CCCGAGGAGGACCCGACGACCCTGCTCGGCGACGTCGTCCTGTGTCCCGAGGTGGCCCGGCGGCAGGCCGCGCAGGCCGG
CCACGGGATGGAGCGCGAGCTGCACATCCTCTGCACCCACGGCATCCTGCACCTGCTCGGCTACGACCACGCGGAGCCGG
AGGAGGAACGGGAGATGTGGAAGCTCCAGAACAGCCTGCTGGCCTCCTGGGACACCGCGGCCGGCACCGGCGCCTCCTGA

Upstream 100 bases:

>100_bases
AGCACGGACACGCGCCCCACGCGGGCGGCCCGCCGGGACCGCCGATGAGCGCCGGTGCCGCCGCCGTGGCTCCCGCCCCG
GCGGCGGGAAGGGTTCTCTG

Downstream 100 bases:

>100_bases
CGGGGCCGGGCCGCCATGGACTCCGGTGATCTTCTCCTCGTCTTCATCGCCGCGGTGACCGCGCTCGCCGCGGCCGGCCT
GGGCGCGGTGGACGCGGCGC

Product: putative metalloprotease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 159; Mature: 158

Protein sequence:

>159_residues
MAVFVANESGVTDFDEVTLAALARFVLDTMKVNPLAELSVMLVEIDAMTDLHVRYMAEEGPTDVLAFPQDEAFEPSWSES
PEEDPTTLLGDVVLCPEVARRQAAQAGHGMERELHILCTHGILHLLGYDHAEPEEEREMWKLQNSLLASWDTAAGTGAS

Sequences:

>Translated_159_residues
MAVFVANESGVTDFDEVTLAALARFVLDTMKVNPLAELSVMLVEIDAMTDLHVRYMAEEGPTDVLAFPQDEAFEPSWSES
PEEDPTTLLGDVVLCPEVARRQAAQAGHGMERELHILCTHGILHLLGYDHAEPEEEREMWKLQNSLLASWDTAAGTGAS
>Mature_158_residues
AVFVANESGVTDFDEVTLAALARFVLDTMKVNPLAELSVMLVEIDAMTDLHVRYMAEEGPTDVLAFPQDEAFEPSWSESP
EEDPTTLLGDVVLCPEVARRQAAQAGHGMERELHILCTHGILHLLGYDHAEPEEEREMWKLQNSLLASWDTAAGTGAS

Specific function: Involved in rRNA and/or ribosome maturation and assembly. Required for normal 5' and 3' processing of 16S, 23S and 5S rRNAs. May have metal-dependent hydrolase activity

COG id: COG0319

COG function: function code R; Predicted metal-dependent hydrolase

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rRNA maturation factor YbeY family

Homologues:

Organism=Escherichia coli, GI1786880, Length=95, Percent_Identity=33.6842105263158, Blast_Score=60, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RRMF_FRASN (A8KYW3)

Other databases:

- EMBL:   CP000820
- RefSeq:   YP_001506455.1
- ProteinModelPortal:   A8KYW3
- SMR:   A8KYW3
- GeneID:   5670513
- GenomeReviews:   CP000820_GR
- KEGG:   fre:Franean1_2113
- HOGENOM:   HBG734136
- OMA:   LNGYDHM
- ProtClustDB:   PRK00016
- BioCyc:   FSP1855:FRANEAN1_2113-MONOMER
- HAMAP:   MF_00009
- InterPro:   IPR023091
- InterPro:   IPR020549
- InterPro:   IPR002036
- Gene3D:   G3DSA:3.40.390.30
- TIGRFAMs:   TIGR00043

Pfam domain/function: PF02130 UPF0054

EC number: NA

Molecular weight: Translated: 17481; Mature: 17350

Theoretical pI: Translated: 3.98; Mature: 3.98

Prosite motif: PS01306 UPF0054

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAVFVANESGVTDFDEVTLAALARFVLDTMKVNPLAELSVMLVEIDAMTDLHVRYMAEEG
CEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHEEECCCHHHHHHEEECCCC
PTDVLAFPQDEAFEPSWSESPEEDPTTLLGDVVLCPEVARRQAAQAGHGMERELHILCTH
CCCEEECCCCCCCCCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHCCCCCCHHHHHHHHH
GILHLLGYDHAEPEEEREMWKLQNSLLASWDTAAGTGAS
HHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure 
AVFVANESGVTDFDEVTLAALARFVLDTMKVNPLAELSVMLVEIDAMTDLHVRYMAEEG
EEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHEEECCCHHHHHHEEECCCC
PTDVLAFPQDEAFEPSWSESPEEDPTTLLGDVVLCPEVARRQAAQAGHGMERELHILCTH
CCCEEECCCCCCCCCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHCCCCCCHHHHHHHHH
GILHLLGYDHAEPEEEREMWKLQNSLLASWDTAAGTGAS
HHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA