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The map label for this gene is rsmE [H]

Identifier: 158313945

GI number: 158313945

Start: 2537751

End: 2538479

Strand: Direct

Name: rsmE [H]

Synonym: Franean1_2111

Alternate gene names: 158313945

Gene position: 2537751-2538479 (Clockwise)

Preceding gene: 158313944

Following gene: 158313946

Centisome position: 28.25

GC content: 78.46

Gene sequence:

>729_bases
GTGCTGGGCGGCCCCGAGGGCCGGCACGCCGCGACGGTGCGCCGGCTGCGGGTGGGCGAGCGCCTGGACGTCACCGACGG
CGCCGGTGCCGCGCTGGAGTGCGAGGTCCGGTCGGTTGGCCGCGACGAGCTCGAATGCGTCGTCCTGCGCCGGCGGTCGC
CGGCCGCGGCCGGGCCCCGGCTGGTGGTGGCGCAGGCCCTGGCCAAGGGCGACCGTGGGGAGCTGGCGGTCGAGATGCTC
ACCGAGATCGGGGTCGACGAGATCGTGCCCTGGGCGGCCTCGCGCTGCGTCGTCCGCTGGGACGGGGAACGCGGCGAGCG
GTCGCGCGCCAGGTGGACCCGCACCGCCCAGGAGGCGGCCAAGCAGTCGCGCCGGCACGCCTGGCCGCTGGTCGGCCCGT
TGGCGGGCACCGCGGCGCTCGCCGAGCGCGCGCGCCGGGCGGCGCTCGCCGTCGTGCTGCACGAGACGGCGACGACGCCG
CTGGCCGGGCTCGCGCGTGCCCTGCAGCCGGCGTTCGCGGTCGAGCCGGTGCCCGCGGTCGAGCCGGAGATCGGCGAGAT
TCTGCTGGTCGTGGGCCCGGAGGGCGGTGTGGCCGACGGTGAGCTCGAGGCGCTCACGGCCGCCGGCGCGGTGGCTGGCA
GGCTCGGCCCGACGGTGCTGCGGACGTCCACGGCAGGCGTGGTCGCGGCGGCAGTGGTACTCGCCGACATCGGTCGGCTG
GGCGGATAG

Upstream 100 bases:

>100_bases
CCAGCGGGTCCGGCCTGTTCTCCCGGCGCCGTGGCGGTCGGCGCAACCGCTGACCGCGCCCGTCTTCCACCTGGATCCGC
TGCCGTCGGTCGACGTCTTC

Downstream 100 bases:

>100_bases
ACTCGAGATCGGCCGGTAACGTGTCGGCCCCGCCCCGGGTGGCACAGCTGGCCGGTGGCGTGGTTGGTGTGGCACAGCAT
GGCTGGCGTGGCACAGCGTG

Product: 16S ribosomal RNA methyltransferase RsmE

Products: NA

Alternate protein names: 16S rRNA m3U1498 methyltransferase [H]

Number of amino acids: Translated: 242; Mature: 242

Protein sequence:

>242_residues
MLGGPEGRHAATVRRLRVGERLDVTDGAGAALECEVRSVGRDELECVVLRRRSPAAAGPRLVVAQALAKGDRGELAVEML
TEIGVDEIVPWAASRCVVRWDGERGERSRARWTRTAQEAAKQSRRHAWPLVGPLAGTAALAERARRAALAVVLHETATTP
LAGLARALQPAFAVEPVPAVEPEIGEILLVVGPEGGVADGELEALTAAGAVAGRLGPTVLRTSTAGVVAAAVVLADIGRL
GG

Sequences:

>Translated_242_residues
MLGGPEGRHAATVRRLRVGERLDVTDGAGAALECEVRSVGRDELECVVLRRRSPAAAGPRLVVAQALAKGDRGELAVEML
TEIGVDEIVPWAASRCVVRWDGERGERSRARWTRTAQEAAKQSRRHAWPLVGPLAGTAALAERARRAALAVVLHETATTP
LAGLARALQPAFAVEPVPAVEPEIGEILLVVGPEGGVADGELEALTAAGAVAGRLGPTVLRTSTAGVVAAAVVLADIGRL
GG
>Mature_242_residues
MLGGPEGRHAATVRRLRVGERLDVTDGAGAALECEVRSVGRDELECVVLRRRSPAAAGPRLVVAQALAKGDRGELAVEML
TEIGVDEIVPWAASRCVVRWDGERGERSRARWTRTAQEAAKQSRRHAWPLVGPLAGTAALAERARRAALAVVLHETATTP
LAGLARALQPAFAVEPVPAVEPEIGEILLVVGPEGGVADGELEALTAAGAVAGRLGPTVLRTSTAGVVAAAVVLADIGRL
GG

Specific function: Specifically methylates the uridine in position 1498 of 16S rRNA in the fully assembled 30S ribosomal subunit [H]

COG id: COG1385

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA methyltransferase RsmE family [H]

Homologues:

Organism=Escherichia coli, GI87082186, Length=237, Percent_Identity=27.8481012658228, Blast_Score=83, Evalue=2e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015947
- InterPro:   IPR006700 [H]

Pfam domain/function: PF04452 Methyltrans_RNA [H]

EC number: =2.1.1.193 [H]

Molecular weight: Translated: 25075; Mature: 25075

Theoretical pI: Translated: 7.45; Mature: 7.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLGGPEGRHAATVRRLRVGERLDVTDGAGAALECEVRSVGRDELECVVLRRRSPAAAGPR
CCCCCCCCHHHHHHHHHCCCEECCCCCCCCEEEEHHHHCCCCCEEEEEEECCCCCCCCCH
LVVAQALAKGDRGELAVEMLTEIGVDEIVPWAASRCVVRWDGERGERSRARWTRTAQEAA
HHHHHHHHCCCCCHHHHHHHHHCCHHHHCHHHHCCEEEEECCCCCCHHHHHHHHHHHHHH
KQSRRHAWPLVGPLAGTAALAERARRAALAVVLHETATTPLAGLARALQPAFAVEPVPAV
HHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCHHHHCCCCCCC
EPEIGEILLVVGPEGGVADGELEALTAAGAVAGRLGPTVLRTSTAGVVAAAVVLADIGRL
CCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCHHHHCCHHHHHHHHHHHHHHHHC
GG
CC
>Mature Secondary Structure
MLGGPEGRHAATVRRLRVGERLDVTDGAGAALECEVRSVGRDELECVVLRRRSPAAAGPR
CCCCCCCCHHHHHHHHHCCCEECCCCCCCCEEEEHHHHCCCCCEEEEEEECCCCCCCCCH
LVVAQALAKGDRGELAVEMLTEIGVDEIVPWAASRCVVRWDGERGERSRARWTRTAQEAA
HHHHHHHHCCCCCHHHHHHHHHCCHHHHCHHHHCCEEEEECCCCCCHHHHHHHHHHHHHH
KQSRRHAWPLVGPLAGTAALAERARRAALAVVLHETATTPLAGLARALQPAFAVEPVPAV
HHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCHHHHCCCCCCC
EPEIGEILLVVGPEGGVADGELEALTAAGAVAGRLGPTVLRTSTAGVVAAAVVLADIGRL
CCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCHHHHCCHHHHHHHHHHHHHHHHC
GG
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12788972 [H]