Click here to switch to the map view.

The map label for this gene is yfdE [H]

Identifier: 158313436

GI number: 158313436

Start: 1911092

End: 1912363

Strand: Direct

Name: yfdE [H]

Synonym: Franean1_1599

Alternate gene names: 158313436

Gene position: 1911092-1912363 (Clockwise)

Preceding gene: 158313435

Following gene: 158313440

Centisome position: 21.28

GC content: 73.98

Gene sequence:

>1272_bases
GTGAACGTACACTTATCAGCTGTGCATCCGTTGTCTGAGCGCAAGGACGGTAAGCCGGGAAGCGGGCCGCTGGCGGGCGT
GAAGGTCGTCGAGCTCGCCGGCCGCGGGCCGGGGCCCTTCGGCGCGATGATCCTCGCCGATCTGGGGGCCGAGGTCGTCC
GCGTCGCCCGGCTCGAGGACGTCGCGCCGAGCGAGGAGGAGAGCGCGACCGAGCGCTCCCTGAAAGGACACCGCCGGATC
GACCTGCTGACCCGCGGCCGCCGGTCCGTCGCGCTCGACCTCAAGCATCCCGGCGGCGTCGAGGCCGTCCTGCGGATGGT
CGACCGGGCGGACGTCCTCGTCGAGGGGTACCGGCCGGGGGTGGCCGAGCGGCTCGGGCTGGGGCCGGACGAGTGCCTTT
GGCGCAACCCCCGGCTGGTGTACGCGCGGATGACCGGCTTCGGGCAGGAGGGCCCCTACACCCGCAGCCCCGGGCACGAC
ATCAACTATGTCGCCCTCGCCGGGGCGCTCGAGCCGCTGCGCCGGCCCGGCCAGCCGCCAGCCCCACCGCTGAACCTGCT
CGGCGACTTCGGTGGCGGCGGGATGCTGCTCGTCATCGGCGTGCTCGGCGCGCTGGTCGAGCGTGCCCGCTCGGGGCTCG
GCCAGGTCGTCGACGCCGCGATGGTCGACGGCGTCGCACTGCTGACCACGCTGTTCCACGGGATGCGCGCCGAGGGGCTT
TGGTCCGACGAGCCGGGCACGAACATCCTCAGCCTGGCGGCGCCGTTCTACAACGTCTACGAGACGTCCGACGGTCGGCA
TGTCGCGGTCGGGGCGGGCGAGCACCCGTTCTACGCGGAGCTGCTCCAGCGGCTCGGCCTCGGCGACGAGCTGCTCCGTC
AGCAGGGCGACCCGGCGACCTGGCCGGCGGGCCGGGCCGCACTGGAGGCCGTCTTCCGCACCCGCACGCTGGCGGAGTGG
ACCGCTGAGCTGGAGGGCACCGACACCTGCTTCACCCCGGTGCTGACGATGGAGGAGGCCACCCGCCACCCACACAACGT
CGAGCGGCAGACCTTCGTCGAGGTGGACGGCGTCGTCCAGCCGGCACCCGCCCCACGATTCAGCCGGACCCCGGCGGGGC
CGGGCGGGCCACCTGCGGCAGCGGGCCAGCACACCCGGGAGGTCCTGCTCGACTGGGGCTTCGCGCAGGACGACCTAGAC
GCGCTGCTCACCTCCGGCGCGGCCCGCCAGGCCCCCACCCGCGAGACACCCAGCGGCGACGGGCCGACGTGA

Upstream 100 bases:

>100_bases
GGCGCTGGATCGCCTGAACCCCTGAACCCCTGAACCCCTGAACACCAGCGCCTCTGAGCACCCGCGCCGGCGGCGCCCGG
TTGTTGCGGGCCATAAAAAA

Downstream 100 bases:

>100_bases
TCACCCGAGCCAGCCGAGGCGCCCGAACCGGCCGAGCCGCTCGCGCATCCCGCTGACCGGGGCACCGACGCCCCGGTTCC
GAGGCTGGTGGACGGCCGCC

Product: L-carnitine dehydratase/bile acid-inducible protein F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 423; Mature: 423

Protein sequence:

>423_residues
MNVHLSAVHPLSERKDGKPGSGPLAGVKVVELAGRGPGPFGAMILADLGAEVVRVARLEDVAPSEEESATERSLKGHRRI
DLLTRGRRSVALDLKHPGGVEAVLRMVDRADVLVEGYRPGVAERLGLGPDECLWRNPRLVYARMTGFGQEGPYTRSPGHD
INYVALAGALEPLRRPGQPPAPPLNLLGDFGGGGMLLVIGVLGALVERARSGLGQVVDAAMVDGVALLTTLFHGMRAEGL
WSDEPGTNILSLAAPFYNVYETSDGRHVAVGAGEHPFYAELLQRLGLGDELLRQQGDPATWPAGRAALEAVFRTRTLAEW
TAELEGTDTCFTPVLTMEEATRHPHNVERQTFVEVDGVVQPAPAPRFSRTPAGPGGPPAAAGQHTREVLLDWGFAQDDLD
ALLTSGAARQAPTRETPSGDGPT

Sequences:

>Translated_423_residues
MNVHLSAVHPLSERKDGKPGSGPLAGVKVVELAGRGPGPFGAMILADLGAEVVRVARLEDVAPSEEESATERSLKGHRRI
DLLTRGRRSVALDLKHPGGVEAVLRMVDRADVLVEGYRPGVAERLGLGPDECLWRNPRLVYARMTGFGQEGPYTRSPGHD
INYVALAGALEPLRRPGQPPAPPLNLLGDFGGGGMLLVIGVLGALVERARSGLGQVVDAAMVDGVALLTTLFHGMRAEGL
WSDEPGTNILSLAAPFYNVYETSDGRHVAVGAGEHPFYAELLQRLGLGDELLRQQGDPATWPAGRAALEAVFRTRTLAEW
TAELEGTDTCFTPVLTMEEATRHPHNVERQTFVEVDGVVQPAPAPRFSRTPAGPGGPPAAAGQHTREVLLDWGFAQDDLD
ALLTSGAARQAPTRETPSGDGPT
>Mature_423_residues
MNVHLSAVHPLSERKDGKPGSGPLAGVKVVELAGRGPGPFGAMILADLGAEVVRVARLEDVAPSEEESATERSLKGHRRI
DLLTRGRRSVALDLKHPGGVEAVLRMVDRADVLVEGYRPGVAERLGLGPDECLWRNPRLVYARMTGFGQEGPYTRSPGHD
INYVALAGALEPLRRPGQPPAPPLNLLGDFGGGGMLLVIGVLGALVERARSGLGQVVDAAMVDGVALLTTLFHGMRAEGL
WSDEPGTNILSLAAPFYNVYETSDGRHVAVGAGEHPFYAELLQRLGLGDELLRQQGDPATWPAGRAALEAVFRTRTLAEW
TAELEGTDTCFTPVLTMEEATRHPHNVERQTFVEVDGVVQPAPAPRFSRTPAGPGGPPAAAGQHTREVLLDWGFAQDDLD
ALLTSGAARQAPTRETPSGDGPT

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI42794625, Length=382, Percent_Identity=44.5026178010471, Blast_Score=314, Evalue=9e-86,
Organism=Homo sapiens, GI266456254, Length=382, Percent_Identity=44.5026178010471, Blast_Score=314, Evalue=1e-85,
Organism=Homo sapiens, GI266458393, Length=288, Percent_Identity=45.1388888888889, Blast_Score=236, Evalue=2e-62,
Organism=Homo sapiens, GI266458397, Length=260, Percent_Identity=46.9230769230769, Blast_Score=232, Evalue=4e-61,
Organism=Homo sapiens, GI266458395, Length=145, Percent_Identity=48.9655172413793, Blast_Score=132, Evalue=6e-31,
Organism=Homo sapiens, GI42822893, Length=145, Percent_Identity=48.9655172413793, Blast_Score=132, Evalue=7e-31,
Organism=Homo sapiens, GI300863128, Length=421, Percent_Identity=25.6532066508314, Blast_Score=125, Evalue=8e-29,
Organism=Homo sapiens, GI300863124, Length=447, Percent_Identity=24.8322147651007, Blast_Score=117, Evalue=2e-26,
Organism=Homo sapiens, GI300863126, Length=415, Percent_Identity=23.855421686747, Blast_Score=102, Evalue=6e-22,
Organism=Escherichia coli, GI87082093, Length=390, Percent_Identity=29.2307692307692, Blast_Score=140, Evalue=1e-34,
Organism=Escherichia coli, GI1786222, Length=418, Percent_Identity=25.8373205741627, Blast_Score=96, Evalue=6e-21,
Organism=Escherichia coli, GI1788717, Length=216, Percent_Identity=31.9444444444444, Blast_Score=87, Evalue=3e-18,
Organism=Caenorhabditis elegans, GI32564160, Length=348, Percent_Identity=34.4827586206897, Blast_Score=195, Evalue=4e-50,
Organism=Caenorhabditis elegans, GI115535051, Length=348, Percent_Identity=33.3333333333333, Blast_Score=192, Evalue=3e-49,
Organism=Drosophila melanogaster, GI24585488, Length=385, Percent_Identity=40.5194805194805, Blast_Score=285, Evalue=3e-77,
Organism=Drosophila melanogaster, GI24648431, Length=406, Percent_Identity=27.8325123152709, Blast_Score=116, Evalue=3e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 44956; Mature: 44956

Theoretical pI: Translated: 5.31; Mature: 5.31

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNVHLSAVHPLSERKDGKPGSGPLAGVKVVELAGRGPGPFGAMILADLGAEVVRVARLED
CCEEECCCCCHHHCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHH
VAPSEEESATERSLKGHRRIDLLTRGRRSVALDLKHPGGVEAVLRMVDRADVLVEGYRPG
CCCCCHHHHHHHHHCCCCEEHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCC
VAERLGLGPDECLWRNPRLVYARMTGFGQEGPYTRSPGHDINYVALAGALEPLRRPGQPP
HHHHHCCCHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCEEHHHHHHHHHCCCCCC
APPLNLLGDFGGGGMLLVIGVLGALVERARSGLGQVVDAAMVDGVALLTTLFHGMRAEGL
CCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
WSDEPGTNILSLAAPFYNVYETSDGRHVAVGAGEHPFYAELLQRLGLGDELLRQQGDPAT
CCCCCCCCEEEHHHHHHHHEECCCCCEEEECCCCCCHHHHHHHHCCCCHHHHHCCCCCCC
WPAGRAALEAVFRTRTLAEWTAELEGTDTCFTPVLTMEEATRHPHNVERQTFVEVDGVVQ
CCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHEEHHHHHCCCCCCCHHHEEEECCCCC
PAPAPRFSRTPAGPGGPPAAAGQHTREVLLDWGFAQDDLDALLTSGAARQAPTRETPSGD
CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCC
GPT
CCC
>Mature Secondary Structure
MNVHLSAVHPLSERKDGKPGSGPLAGVKVVELAGRGPGPFGAMILADLGAEVVRVARLED
CCEEECCCCCHHHCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHH
VAPSEEESATERSLKGHRRIDLLTRGRRSVALDLKHPGGVEAVLRMVDRADVLVEGYRPG
CCCCCHHHHHHHHHCCCCEEHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCC
VAERLGLGPDECLWRNPRLVYARMTGFGQEGPYTRSPGHDINYVALAGALEPLRRPGQPP
HHHHHCCCHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCEEHHHHHHHHHCCCCCC
APPLNLLGDFGGGGMLLVIGVLGALVERARSGLGQVVDAAMVDGVALLTTLFHGMRAEGL
CCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
WSDEPGTNILSLAAPFYNVYETSDGRHVAVGAGEHPFYAELLQRLGLGDELLRQQGDPAT
CCCCCCCCEEEHHHHHHHHEECCCCCEEEECCCCCCHHHHHHHHCCCCHHHHHCCCCCCC
WPAGRAALEAVFRTRTLAEWTAELEGTDTCFTPVLTMEEATRHPHNVERQTFVEVDGVVQ
CCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHEEHHHHHCCCCCCCHHHEEEECCCCC
PAPAPRFSRTPAGPGGPPAAAGQHTREVLLDWGFAQDDLDALLTSGAARQAPTRETPSGD
CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCC
GPT
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]