| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is 158313261
Identifier: 158313261
GI number: 158313261
Start: 1714824
End: 1715570
Strand: Direct
Name: 158313261
Synonym: Franean1_1420
Alternate gene names: NA
Gene position: 1714824-1715570 (Clockwise)
Preceding gene: 158313259
Following gene: 158313262
Centisome position: 19.09
GC content: 72.29
Gene sequence:
>747_bases GTGTCCGATGATCCGCCCGCACCGTCGGTGCCGTCGTATGACGAGCTCGCGGCGCTGGTGGTGGAACAGGCGGCCCTGAT CGCGCAGTTGCGGGCCGAGTTGGAACAGGCCCGGGCGCGGATAGCCGAGTTGGAGGCCCAGGTCGCCAAGACGTCGCGGA ACTCGGCGAAGCCACCGAGTTCGGACGGGCTGGCCAAGCCACCCCCGAAGTCGCTGCGGAAGAAGACCGGCCGGCGGCCC GGTGGGCAGAACGGCCATCCCGGATCGACGCTACGCATGGTCGCCGATCCCGATGTGCGGCTGGCGCACGAGCCGGGGCC GTGCTCGGGGTGCGGGACGTCGCTGTCGGGCCGGCCCGTTACCCGGACCGAACGCCGGCAGGTCTTCGACCTGCCCGACC TACGCCCGCACGTGACCGAACATCAGCTCCTCGAACGGGAATGCGGCTGCGGGACACGCACGAAGGCCACCGCACCGGCC GGGGTGGACGCCCCGGTGCAGTACGGGCCGCGGGTGACCGCGGCGGCGGTCTACCTGTATTCCGGCCAGTTCTTGTCGAA GGACCGGACCGCGACCGCGCTCGCCGAGCTGGTCGGGATCCCCCTGTCCGCGGGCACGGTCGCGGCGATGGCCGCCCGCG CCGCCGCCGACCTGGAGGGTTTCCTCACCACCATCCGCGAGCACCTCGCCGCCGCCGAGGTGATCGGCGCGGACGAGACC GGGCTACGGGTCGCCGGCAGATTATAG
Upstream 100 bases:
>100_bases ATCGTTTGTTTTTGGTTTCGCGGCGGGTTGGGGCTCCTCGATGACCCGGCGACCCGGGAGTGTTGGCGCCGCGTGGTTGA TCAGACCGTAGGGTCCGGGT
Downstream 100 bases:
>100_bases GTTCGAGTCCTATCGCGGGAGCACGTTCGCCCAGGTCAGGGGCCATGTTAGCGAGATTCCAAAGATCTTGAAGTGAAGAT CACCCCAACTTTACCCCCAT
Product: transposase
Products: NA
Alternate protein names: Transposase IS; Transposase Is; Archae-Like Transposase; Transposase Of
Number of amino acids: Translated: 248; Mature: 247
Protein sequence:
>248_residues MSDDPPAPSVPSYDELAALVVEQAALIAQLRAELEQARARIAELEAQVAKTSRNSAKPPSSDGLAKPPPKSLRKKTGRRP GGQNGHPGSTLRMVADPDVRLAHEPGPCSGCGTSLSGRPVTRTERRQVFDLPDLRPHVTEHQLLERECGCGTRTKATAPA GVDAPVQYGPRVTAAAVYLYSGQFLSKDRTATALAELVGIPLSAGTVAAMAARAAADLEGFLTTIREHLAAAEVIGADET GLRVAGRL
Sequences:
>Translated_248_residues MSDDPPAPSVPSYDELAALVVEQAALIAQLRAELEQARARIAELEAQVAKTSRNSAKPPSSDGLAKPPPKSLRKKTGRRP GGQNGHPGSTLRMVADPDVRLAHEPGPCSGCGTSLSGRPVTRTERRQVFDLPDLRPHVTEHQLLERECGCGTRTKATAPA GVDAPVQYGPRVTAAAVYLYSGQFLSKDRTATALAELVGIPLSAGTVAAMAARAAADLEGFLTTIREHLAAAEVIGADET GLRVAGRL >Mature_247_residues SDDPPAPSVPSYDELAALVVEQAALIAQLRAELEQARARIAELEAQVAKTSRNSAKPPSSDGLAKPPPKSLRKKTGRRPG GQNGHPGSTLRMVADPDVRLAHEPGPCSGCGTSLSGRPVTRTERRQVFDLPDLRPHVTEHQLLERECGCGTRTKATAPAG VDAPVQYGPRVTAAAVYLYSGQFLSKDRTATALAELVGIPLSAGTVAAMAARAAADLEGFLTTIREHLAAAEVIGADETG LRVAGRL
Specific function: Unknown
COG id: COG3436
COG function: function code L; Transposase and inactivated derivatives
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 26009; Mature: 25878
Theoretical pI: Translated: 8.33; Mature: 8.33
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSDDPPAPSVPSYDELAALVVEQAALIAQLRAELEQARARIAELEAQVAKTSRNSAKPPS CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC SDGLAKPPPKSLRKKTGRRPGGQNGHPGSTLRMVADPDVRLAHEPGPCSGCGTSLSGRPV CCCCCCCCHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCEECCCCCCCCCCCCCCCCCCC TRTERRQVFDLPDLRPHVTEHQLLERECGCGTRTKATAPAGVDAPVQYGPRVTAAAVYLY CHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH SGQFLSKDRTATALAELVGIPLSAGTVAAMAARAAADLEGFLTTIREHLAAAEVIGADET CCCHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC GLRVAGRL CCEECCCC >Mature Secondary Structure SDDPPAPSVPSYDELAALVVEQAALIAQLRAELEQARARIAELEAQVAKTSRNSAKPPS CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC SDGLAKPPPKSLRKKTGRRPGGQNGHPGSTLRMVADPDVRLAHEPGPCSGCGTSLSGRPV CCCCCCCCHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCEECCCCCCCCCCCCCCCCCCC TRTERRQVFDLPDLRPHVTEHQLLERECGCGTRTKATAPAGVDAPVQYGPRVTAAAVYLY CHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH SGQFLSKDRTATALAELVGIPLSAGTVAAMAARAAADLEGFLTTIREHLAAAEVIGADET CCCHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC GLRVAGRL CCEECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA