| Definition | Shewanella pealeana ATCC 700345 chromosome, complete genome. |
|---|---|
| Accession | NC_009901 |
| Length | 5,174,581 |
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The map label for this gene is mnmG [H]
Identifier: 157964062
GI number: 157964062
Start: 5163240
End: 5165129
Strand: Reverse
Name: mnmG [H]
Synonym: Spea_4251
Alternate gene names: 157964062
Gene position: 5165129-5163240 (Counterclockwise)
Preceding gene: 157964063
Following gene: 157964061
Centisome position: 99.82
GC content: 44.81
Gene sequence:
>1890_bases ATGCAATTTCATGAACGGTTTGATGTAATTGTTGTTGGTGGTGGTCATGCTGGTACTGAAGCGGCTTTAGCTTCAGCTAG AATGGGCTCTAAAACACTTTTACTGACCCATAACATAGATACTTTGGGACAAATGTCCTGTAACCCTGCTATCGGCGGCA TAGGTAAAGGACACTTAGTCAAAGAAATTGATGCACTAGGTGGAGCAATGGCTGTTGCTACCGATTTTGCAGGTATCCAA TTTCGAACATTGAATTCAAGCAAAGGGCCTGCCGTTCGCGCTACTCGTGCACAAGCCGATAGAGCGCTTTATCGCCATAA GATCCAAGAGATCTTACAGCACCAAGCTAACCTACGTATTTTTCAGCAAGCAGTAGACGATCTTGTTGTTGAAAACGGAA AAGTTGTTGGTGTAGTTACACAGATGGGCCTTGCCTTTGAAGCACCTGCGGTTGTCTTAACTGCCGGTACATTCTTAGGT GGAAAAATCCATATTGGACTCGAAAACTACAGCGGTGGTCGAGCCGGTGATCCACCTGCAATCGCTTTAGCTCATCGATT AAGAGAGTTACCAATTCGTGTTGGCCGTTTAAAAACTGGCACACCACCACGAATCGATGCTAATACCATCGACTTTTCAC AGATGACAGAGCAAAAAGGTGATGATCCATTGCCAGTCATGTCTTTCATCGGTGATGTAAACGATCATCCTGAGCAGGTC TCTTGTCATATCACGCACACTAACGAGCGTACCCACGACATTATTCGTGGCGGATTAGACCGAAGCCCAATGTATTCAGG CATTATCGAAGGTATTGGTCCACGTTACTGCCCTTCTATCGAAGACAAAGTTAATCGATTTGCTGATAAAACATCTCATC AAATCTTTATCGAACCTGAAGGGTTAAATACCACTGAAATTTATCCAAACGGTATATCAACCAGTTTACCGTTTGATGTT CAGCTCAATTTGGTTCGTTCAATCAAGGGCATGGAAAACGCTGAGATCATGCGTCCAGGCTATGCGATTGAGTATGATTA TTTCGATCCTCGCGATCTTAAAAACTCACTAGAGACCAAAACCATTGCAGGTTTATTCTTTGCTGGTCAGATCAACGGCA CAACAGGTTACGAAGAAGCGGGTGCACAAGGCCTATTAGCCGGCATGAACGCCTCACTGCAAGTGCAAGGCAAAGAAGCT TGGTGTCCGCGTCGTGATCAAGCCTATCTAGGTGTTTTAGTTGATGACTTATCGACTTTAGGCACTAAAGAACCGTACCG CATGTTCACTAGCCGCGCGGAATACCGTTTGCTGCTTCGCGAAGATAACGCCGATCTGCGTTTAACTGAGAAAGGTCGTG AACTTGGATTAGTCGATGATAATCGTTGGGCACTGTTTAGCGAGAAGATGGAATCGATCGAAACTGAACTACAGCGCTTA CGCGGTCAGTGGGTCCACCCAAATTCACCCTTGGTTGAAGCGTTGAACCCGCATCTGAATACACCGATCACTCGTGAAGC TACGTTTGAAGATCTATTGCGTCGTCCAGAAATGGATTACCCGAAACTGATGTCTATTGACGGTTTTGGTCCTTCGCTTG AAGATCAACGTGCTGCAGAGCAGGTTCAGATCCAAGTTAAGTACTCTGGTTATATTCAGCGTCAGCAAGGCGAGATTGAT AAGGCGATTCGTCATGAGACTACTCTGCTACCGTTAGATTTGGATTACCAAGAAGTACCTGGTTTATCTAACGAAGTAAT TGCCAAGATGAATGAACATAAACCTGAAACCATTGGCCAAGCCTCTCGTATTTCAGGTATGACGCCAGCTGCTATTTCAA TTTTGCTGGTTCATCTTAAAAAACGTGGTTTATTACGTAAAAGCGCTTAG
Upstream 100 bases:
>100_bases GATCAAAACAAGCAAAATAGATCGTTCACCTTAAGCGAAGCAAATGCTAAAATGATCCGCTCAGAAACAATTTATCCTTT TACGAATCGAAGGCTGTCGA
Downstream 100 bases:
>100_bases TTCGCCACATATTCGGTAGTTTTGCATGATAAAGGGAAGCTTTGAGGCTTCCCTTCATCTTTTCAGCACTTCATAATACC GATTGATTTTTGATTCGCTT
Product: tRNA uridine 5-carboxymethylaminomethyl modification protein GidA
Products: NA
Alternate protein names: Glucose-inhibited division protein A [H]
Number of amino acids: Translated: 629; Mature: 629
Protein sequence:
>629_residues MQFHERFDVIVVGGGHAGTEAALASARMGSKTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEIDALGGAMAVATDFAGIQ FRTLNSSKGPAVRATRAQADRALYRHKIQEILQHQANLRIFQQAVDDLVVENGKVVGVVTQMGLAFEAPAVVLTAGTFLG GKIHIGLENYSGGRAGDPPAIALAHRLRELPIRVGRLKTGTPPRIDANTIDFSQMTEQKGDDPLPVMSFIGDVNDHPEQV SCHITHTNERTHDIIRGGLDRSPMYSGIIEGIGPRYCPSIEDKVNRFADKTSHQIFIEPEGLNTTEIYPNGISTSLPFDV QLNLVRSIKGMENAEIMRPGYAIEYDYFDPRDLKNSLETKTIAGLFFAGQINGTTGYEEAGAQGLLAGMNASLQVQGKEA WCPRRDQAYLGVLVDDLSTLGTKEPYRMFTSRAEYRLLLREDNADLRLTEKGRELGLVDDNRWALFSEKMESIETELQRL RGQWVHPNSPLVEALNPHLNTPITREATFEDLLRRPEMDYPKLMSIDGFGPSLEDQRAAEQVQIQVKYSGYIQRQQGEID KAIRHETTLLPLDLDYQEVPGLSNEVIAKMNEHKPETIGQASRISGMTPAAISILLVHLKKRGLLRKSA
Sequences:
>Translated_629_residues MQFHERFDVIVVGGGHAGTEAALASARMGSKTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEIDALGGAMAVATDFAGIQ FRTLNSSKGPAVRATRAQADRALYRHKIQEILQHQANLRIFQQAVDDLVVENGKVVGVVTQMGLAFEAPAVVLTAGTFLG GKIHIGLENYSGGRAGDPPAIALAHRLRELPIRVGRLKTGTPPRIDANTIDFSQMTEQKGDDPLPVMSFIGDVNDHPEQV SCHITHTNERTHDIIRGGLDRSPMYSGIIEGIGPRYCPSIEDKVNRFADKTSHQIFIEPEGLNTTEIYPNGISTSLPFDV QLNLVRSIKGMENAEIMRPGYAIEYDYFDPRDLKNSLETKTIAGLFFAGQINGTTGYEEAGAQGLLAGMNASLQVQGKEA WCPRRDQAYLGVLVDDLSTLGTKEPYRMFTSRAEYRLLLREDNADLRLTEKGRELGLVDDNRWALFSEKMESIETELQRL RGQWVHPNSPLVEALNPHLNTPITREATFEDLLRRPEMDYPKLMSIDGFGPSLEDQRAAEQVQIQVKYSGYIQRQQGEID KAIRHETTLLPLDLDYQEVPGLSNEVIAKMNEHKPETIGQASRISGMTPAAISILLVHLKKRGLLRKSA >Mature_629_residues MQFHERFDVIVVGGGHAGTEAALASARMGSKTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEIDALGGAMAVATDFAGIQ FRTLNSSKGPAVRATRAQADRALYRHKIQEILQHQANLRIFQQAVDDLVVENGKVVGVVTQMGLAFEAPAVVLTAGTFLG GKIHIGLENYSGGRAGDPPAIALAHRLRELPIRVGRLKTGTPPRIDANTIDFSQMTEQKGDDPLPVMSFIGDVNDHPEQV SCHITHTNERTHDIIRGGLDRSPMYSGIIEGIGPRYCPSIEDKVNRFADKTSHQIFIEPEGLNTTEIYPNGISTSLPFDV QLNLVRSIKGMENAEIMRPGYAIEYDYFDPRDLKNSLETKTIAGLFFAGQINGTTGYEEAGAQGLLAGMNASLQVQGKEA WCPRRDQAYLGVLVDDLSTLGTKEPYRMFTSRAEYRLLLREDNADLRLTEKGRELGLVDDNRWALFSEKMESIETELQRL RGQWVHPNSPLVEALNPHLNTPITREATFEDLLRRPEMDYPKLMSIDGFGPSLEDQRAAEQVQIQVKYSGYIQRQQGEID KAIRHETTLLPLDLDYQEVPGLSNEVIAKMNEHKPETIGQASRISGMTPAAISILLVHLKKRGLLRKSA
Specific function: NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34 [H]
COG id: COG0445
COG function: function code D; NAD/FAD-utilizing enzyme apparently involved in cell division
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the MnmG family [H]
Homologues:
Organism=Homo sapiens, GI74024895, Length=632, Percent_Identity=45.5696202531646, Blast_Score=493, Evalue=1e-139, Organism=Homo sapiens, GI19882217, Length=657, Percent_Identity=43.8356164383562, Blast_Score=479, Evalue=1e-135, Organism=Homo sapiens, GI183227703, Length=672, Percent_Identity=42.8571428571429, Blast_Score=474, Evalue=1e-133, Organism=Escherichia coli, GI2367273, Length=629, Percent_Identity=73.6089030206677, Blast_Score=971, Evalue=0.0, Organism=Caenorhabditis elegans, GI17534255, Length=636, Percent_Identity=40.7232704402516, Blast_Score=470, Evalue=1e-133, Organism=Saccharomyces cerevisiae, GI6321202, Length=627, Percent_Identity=45.933014354067, Blast_Score=496, Evalue=1e-141, Organism=Drosophila melanogaster, GI24658174, Length=638, Percent_Identity=45.4545454545455, Blast_Score=508, Evalue=1e-144,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004416 - InterPro: IPR002218 - InterPro: IPR020595 [H]
Pfam domain/function: PF01134 GIDA [H]
EC number: NA
Molecular weight: Translated: 69385; Mature: 69385
Theoretical pI: Translated: 6.25; Mature: 6.25
Prosite motif: PS01280 GIDA_1 ; PS01281 GIDA_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQFHERFDVIVVGGGHAGTEAALASARMGSKTLLLTHNIDTLGQMSCNPAIGGIGKGHLV CCCCCCCCEEEEECCCCCHHHHHHHHHCCCEEEEEEECCCCHHCCCCCCCCCCCCCCHHH KEIDALGGAMAVATDFAGIQFRTLNSSKGPAVRATRAQADRALYRHKIQEILQHQANLRI HHHHHHCCHHEEHHCCCCEEEEEECCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHH FQQAVDDLVVENGKVVGVVTQMGLAFEAPAVVLTAGTFLGGKIHIGLENYSGGRAGDPPA HHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEEEECEEECCEEEEEEECCCCCCCCCCHH IALAHRLRELPIRVGRLKTGTPPRIDANTIDFSQMTEQKGDDPLPVMSFIGDVNDHPEQV HHHHHHHHHCCHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCHHHHHHCCCCCCCCEE SCHITHTNERTHDIIRGGLDRSPMYSGIIEGIGPRYCPSIEDKVNRFADKTSHQIFIEPE EEEEEECCCHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCEEEEECC GLNTTEIYPNGISTSLPFDVQLNLVRSIKGMENAEIMRPGYAIEYDYFDPRDLKNSLETK CCCCCEECCCCCCCCCCCCEEHHHHHHHCCCCCCEEECCCEEEEECCCCHHHHHHHHHHH TIAGLFFAGQINGTTGYEEAGAQGLLAGMNASLQVQGKEAWCPRRDQAYLGVLVDDLSTL HEEEEEEEEEECCCCCCHHCCCCCEEECCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHH GTKEPYRMFTSRAEYRLLLREDNADLRLTEKGRELGLVDDNRWALFSEKMESIETELQRL CCCCHHHHHHCCCCEEEEEEECCCCEEEECCCCEECCEECCCHHHHHHHHHHHHHHHHHH RGQWVHPNSPLVEALNPHLNTPITREATFEDLLRRPEMDYPKLMSIDGFGPSLEDQRAAE CCCCCCCCCCHHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCCEEEECCCCCCCCHHHCCE QVQIQVKYSGYIQRQQGEIDKAIRHETTLLPLDLDYQEVPGLSNEVIAKMNEHKPETIGQ EEEEEEEECCEEEECCCHHHHHHHCCCEEEEECCCHHHCCCCCHHHHHHHHCCCCHHHCC ASRISGMTPAAISILLVHLKKRGLLRKSA HHHCCCCCHHHHHHHHHHHHHCCCCCCCC >Mature Secondary Structure MQFHERFDVIVVGGGHAGTEAALASARMGSKTLLLTHNIDTLGQMSCNPAIGGIGKGHLV CCCCCCCCEEEEECCCCCHHHHHHHHHCCCEEEEEEECCCCHHCCCCCCCCCCCCCCHHH KEIDALGGAMAVATDFAGIQFRTLNSSKGPAVRATRAQADRALYRHKIQEILQHQANLRI HHHHHHCCHHEEHHCCCCEEEEEECCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHH FQQAVDDLVVENGKVVGVVTQMGLAFEAPAVVLTAGTFLGGKIHIGLENYSGGRAGDPPA HHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEEEECEEECCEEEEEEECCCCCCCCCCHH IALAHRLRELPIRVGRLKTGTPPRIDANTIDFSQMTEQKGDDPLPVMSFIGDVNDHPEQV HHHHHHHHHCCHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCHHHHHHCCCCCCCCEE SCHITHTNERTHDIIRGGLDRSPMYSGIIEGIGPRYCPSIEDKVNRFADKTSHQIFIEPE EEEEEECCCHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCEEEEECC GLNTTEIYPNGISTSLPFDVQLNLVRSIKGMENAEIMRPGYAIEYDYFDPRDLKNSLETK CCCCCEECCCCCCCCCCCCEEHHHHHHHCCCCCCEEECCCEEEEECCCCHHHHHHHHHHH TIAGLFFAGQINGTTGYEEAGAQGLLAGMNASLQVQGKEAWCPRRDQAYLGVLVDDLSTL HEEEEEEEEEECCCCCCHHCCCCCEEECCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHH GTKEPYRMFTSRAEYRLLLREDNADLRLTEKGRELGLVDDNRWALFSEKMESIETELQRL CCCCHHHHHHCCCCEEEEEEECCCCEEEECCCCEECCEECCCHHHHHHHHHHHHHHHHHH RGQWVHPNSPLVEALNPHLNTPITREATFEDLLRRPEMDYPKLMSIDGFGPSLEDQRAAE CCCCCCCCCCHHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCCEEEECCCCCCCCHHHCCE QVQIQVKYSGYIQRQQGEIDKAIRHETTLLPLDLDYQEVPGLSNEVIAKMNEHKPETIGQ EEEEEEEECCEEEECCCHHHHHHHCCCEEEEECCCHHHCCCCCHHHHHHHHCCCCHHHCC ASRISGMTPAAISILLVHLKKRGLLRKSA HHHCCCCCHHHHHHHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA