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The map label for this gene is greB [H]

Identifier: 157963827

GI number: 157963827

Start: 4878864

End: 4879343

Strand: Reverse

Name: greB [H]

Synonym: Spea_4016

Alternate gene names: 157963827

Gene position: 4879343-4878864 (Counterclockwise)

Preceding gene: 157963831

Following gene: 157963826

Centisome position: 94.29

GC content: 45.62

Gene sequence:

>480_bases
ATGAGAACCGCAATCGTCACTCGTGAAGGTTTCGAGAAACTGCAAAAAGAGTTGAACTATCTTTGGCGTGAACATCGCCC
TGAAATCACCAAAATTGTAAGCTGGGCTGCGAGCTTAGGTGACAGAAGTGAGAATGCCGACTATACCTTCAACAAGCGAA
AGCTGCGTGAAATAGACCGCAGAGTACGTTATCTACGTAAAACCCTAGAAAATGTACAAGTTGTCGACTATTCGCCAGCA
CAAGAGGGCAAGGTGTTTTTTGGCGCCTGGGTTGAAATCGAGAATGATGATGGCAACAAGCTAGCGTTTAAGATTGTCGG
ATATGATGAGATCTTTGGTCGTAAGGACTATATCTCCATCGACTCGCCAATGGCCCGTGGTTTGTTGAAGAAAGAGGTCG
ATGATGAAGCCGTGATCAAGACGCCGACAGGTGAGCAGGTTTGGTATATCAATCGCATCTCATATCAAGGCTTTGAATAG

Upstream 100 bases:

>100_bases
ATTGGCTCGATAAGCTCAATACCTCTAGCTAAGCTTTGCTGGATTTATGCTATTATTTTTGCCCATGAACTGTTACTCCC
CCCTTTAAAAAGTAGAAGCT

Downstream 100 bases:

>100_bases
TCAAATAACACCGAATGAGATTGACCCACTAATACCTTAGTGGGTTTCAGTGCTCAATTGCACTATTTGTCGCAGTATTA
GCATTAACCAATGCCATGGG

Product: transcription elongation factor GreB

Products: NA

Alternate protein names: Transcript cleavage factor greB [H]

Number of amino acids: Translated: 159; Mature: 159

Protein sequence:

>159_residues
MRTAIVTREGFEKLQKELNYLWREHRPEITKIVSWAASLGDRSENADYTFNKRKLREIDRRVRYLRKTLENVQVVDYSPA
QEGKVFFGAWVEIENDDGNKLAFKIVGYDEIFGRKDYISIDSPMARGLLKKEVDDEAVIKTPTGEQVWYINRISYQGFE

Sequences:

>Translated_159_residues
MRTAIVTREGFEKLQKELNYLWREHRPEITKIVSWAASLGDRSENADYTFNKRKLREIDRRVRYLRKTLENVQVVDYSPA
QEGKVFFGAWVEIENDDGNKLAFKIVGYDEIFGRKDYISIDSPMARGLLKKEVDDEAVIKTPTGEQVWYINRISYQGFE
>Mature_159_residues
MRTAIVTREGFEKLQKELNYLWREHRPEITKIVSWAASLGDRSENADYTFNKRKLREIDRRVRYLRKTLENVQVVDYSPA
QEGKVFFGAWVEIENDDGNKLAFKIVGYDEIFGRKDYISIDSPMARGLLKKEVDDEAVIKTPTGEQVWYINRISYQGFE

Specific function: Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary

COG id: COG0782

COG function: function code K; Transcription elongation factor

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the greA/greB family [H]

Homologues:

Organism=Escherichia coli, GI87082261, Length=155, Percent_Identity=76.7741935483871, Blast_Score=253, Evalue=5e-69,
Organism=Escherichia coli, GI87082225, Length=157, Percent_Identity=37.5796178343949, Blast_Score=101, Evalue=2e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018151
- InterPro:   IPR001437
- InterPro:   IPR022691
- InterPro:   IPR006358 [H]

Pfam domain/function: PF01272 GreA_GreB; PF03449 GreA_GreB_N [H]

EC number: NA

Molecular weight: Translated: 18717; Mature: 18717

Theoretical pI: Translated: 7.50; Mature: 7.50

Prosite motif: PS00829 GREAB_1 ; PS00830 GREAB_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRTAIVTREGFEKLQKELNYLWREHRPEITKIVSWAASLGDRSENADYTFNKRKLREIDR
CCCEEECHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHH
RVRYLRKTLENVQVVDYSPAQEGKVFFGAWVEIENDDGNKLAFKIVGYDEIFGRKDYISI
HHHHHHHHHHCCEEEECCCCCCCCEEEEEEEEEECCCCCEEEEEEECHHHHHCCCCEEEC
DSPMARGLLKKEVDDEAVIKTPTGEQVWYINRISYQGFE
CCHHHHHHHHHCCCCCCEEECCCCCEEEEEEEEECCCCC
>Mature Secondary Structure
MRTAIVTREGFEKLQKELNYLWREHRPEITKIVSWAASLGDRSENADYTFNKRKLREIDR
CCCEEECHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHH
RVRYLRKTLENVQVVDYSPAQEGKVFFGAWVEIENDDGNKLAFKIVGYDEIFGRKDYISI
HHHHHHHHHHCCEEEECCCCCCCCEEEEEEEEEECCCCCEEEEEEECHHHHHCCCCEEEC
DSPMARGLLKKEVDDEAVIKTPTGEQVWYINRISYQGFE
CCHHHHHHHHHCCCCCCEEECCCCCEEEEEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]