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The map label for this gene is yhgF [C]

Identifier: 157963826

GI number: 157963826

Start: 4876362

End: 4878773

Strand: Reverse

Name: yhgF [C]

Synonym: Spea_4015

Alternate gene names: 157963826

Gene position: 4878773-4876362 (Counterclockwise)

Preceding gene: 157963827

Following gene: 157963823

Centisome position: 94.28

GC content: 48.51

Gene sequence:

>2412_bases
ATGCCATGGGCTGTGGTATCTTTGGCAAAATCCCCTTTATCAACTAGGCTCGACCTCTATCTTATGCAAAATATTGCACA
GCTCATCGCTGAAGAACTGAACGTTCGTCAGCAACAAGTTATCGATACCATTTCATTACTCGACGATGGCGCAACAGTGC
CGTTTATCGCACGTTACCGTAAAGAAGCCACTGGTGGCTTAGATGATGCGCAATTGCGTACTCTATACAGCCGTTTAGGT
TATCTACGTGATCTGAATGATCGTCGTAACGTGATTTTATCGAGCATCGAAGCCCAGAGTAAGTTAACACCTGAGTTGCA
AGCGGCAATCAATGCAGCAGATAGTAAGACGCGTCTAGAAGATCTCTATTTACCTTACAAGCCAAAACGCCGTACCAAGG
GCCTTATCGCCATTGAAGCGGGGATCGAGCCTTTGGCTGACTACCTGTTGGCAAACCGACAGGTAGATTGCGAAGCGGTT
GCTAGCGAATATATCAATGCCGAGGCCGGCTTTGCCGATGCTAAGGCGGTACTCGATGGTGCACGCTTTATCTTGATGGA
GCGTTTTGCTGAAGATGCCGAATTACTGCAAAAAATTCGCGTACAAGTAGAACAAAATGCTGTGTTTGAAAGCCGCATGG
TTAAAGGTAAAGAGAAAGAGGGCGCTAAGTTTAGAGATTACTTCGAGCACTCTGAAAAGCTGACTAAAGTGCCATCTCAC
CGTGCACTTGCCATGCTACGCGGACGTAATGAAGGCATGTTAAGCCTCAATATCAATGCCGATCCGCATCAAGAGCCTAA
GCAAGCTAGTTACTGTGAAGTGATTATTATCGAGCACTTTAAGTTAGGCTTAACAGATAGCGCCGTTGATACATGGTTAA
AGACCGTTGTTGCGGCAACGTGGAAAGTTAAAATCGCCCTGCAAATGGAAACTGAGTTTCTTGGTCGCATGCGTGATACC
GCTGAGCAAGAAGCAATTAAGGTTTTTGCCCGCAACTTAGGCGATCTATTGATGGCAGCTCCTGCCGGTGCTAAAGCGAC
CCTAGGTTTAGATCCGGGTCTTCGCTCAGGTGTGAAAGTCGCTATCGTCAACGACACCGGCAAGTTGATGGCACACACGA
CTATCTTCCCGCATGCCCCACAAAACCAGTGGGATAAGTCGGTAAGAACCTTAGCTAACCTTGTGAAGATGCATAAGGTT
GAGTTGATTGCTATCGGTAACGGTACAGCCTCACGTGAAACCGATAAACTAGCTGCCGATCTGATCAGCCAAGTAAAGGC
TGAGCTACCTAGACTGACTAAGATTATGGTCAGCGAAGCGGGCGCTTCAGTGTATTCAGCATCTGAGCTAGCCTCGGAAG
AGTTCCCGAATATCGATGTTTCGATCCGCGGCGCGGTATCGATTGCTCGTCGTCTGCAAGATCCATTAGCCGAGCTAGTG
AAGATTGAGCCAAAGGCGATTGGTGTGGGTCAGTATCAACACGATGTAAGCCAGAGTCAGTTATCAAGCTCGCTAGAAGC
GGTTGTCGAAGACTGTGTGAATGGCGTAGGCGTAGATGTGAATATGGCATCTGCTGCGTTGCTGGCTCAGGTTGCGGGTC
TTAATAAAACCTTGGCACGTAACATTGTGACCCATCGTGACGAGCAAGGCCGTTTCAACAACCGTAAAGCGCTGCTTAAA
GTGGCACGCCTTGGGCCTAAAGCCTATGAGCAGGCAGCGGGCTTCTTACGTATTAGTGAAGGGGATAACCCACTCGACGG
CTCTTCGGTGCATCCAGAGGCCTACTCATTAGTTGAGTCGATTGCAGCGGCTAAAGGTGTGTCGGTTGCCGAGCTAATCG
GTAACTCAGAGCTACTTAAGGCGCTAGAAGCCAAAGATTTTATCACCAGTGAATTTGGTCTGCCCACAGTGACAGATATT
CTCGCCGAGCTGGATAAGCCGGGACGCGATCCTCGTGGTGAATTTAAAACCGCCACTTTTAAAGAGGGCGTTGAAGAGAT
CAAAGACCTTAAACTGGATATGATCTTAGAAGGTGTGGTAACTAACGTGACTAACTTCGGTGCTTTCGTCGATGTGGGCG
TGCATCAAGATGGTTTAGTCCATATCTCATCGATGACCGACAAGTTTATTGACGATCCGCACAAGGTGGTTAAAGCCGGT
GATATCGTTAAAGTTAAGGTCATGGAAGTTGATGCAGAACGTCGCCGTATCGGCCTAAGTATGCGCCTCGATGATAAGGC
TGGCGATGCACCTAAGAGTGCGCCGCGTCCAGCAAACCACCAAAACAAAGGTGCCCCTAATAAAGGCGCTAATCAGCAGC
GTGGCCAGCAAAAGACTCACAAACCTAAGCAGCAGGCTAATGCCGCTATGGGTAATGCCTTTGCCGATGCGTTCGCTAAA
CTGAAGAAGTAA

Upstream 100 bases:

>100_bases
CTTTGAATAGTCAAATAACACCGAATGAGATTGACCCACTAATACCTTAGTGGGTTTCAGTGCTCAATTGCACTATTTGT
CGCAGTATTAGCATTAACCA

Downstream 100 bases:

>100_bases
TCGATAAAGCGAAAATCGCGATACAAAAAAACCGACAACTGAGTTTGTCGGTTTTTTTATGCGGTTGCTAAAAAGTCTGA
CGGGCTATCAGGCTTAGTGC

Product: RNA-binding S1 domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 803; Mature: 802

Protein sequence:

>803_residues
MPWAVVSLAKSPLSTRLDLYLMQNIAQLIAEELNVRQQQVIDTISLLDDGATVPFIARYRKEATGGLDDAQLRTLYSRLG
YLRDLNDRRNVILSSIEAQSKLTPELQAAINAADSKTRLEDLYLPYKPKRRTKGLIAIEAGIEPLADYLLANRQVDCEAV
ASEYINAEAGFADAKAVLDGARFILMERFAEDAELLQKIRVQVEQNAVFESRMVKGKEKEGAKFRDYFEHSEKLTKVPSH
RALAMLRGRNEGMLSLNINADPHQEPKQASYCEVIIIEHFKLGLTDSAVDTWLKTVVAATWKVKIALQMETEFLGRMRDT
AEQEAIKVFARNLGDLLMAAPAGAKATLGLDPGLRSGVKVAIVNDTGKLMAHTTIFPHAPQNQWDKSVRTLANLVKMHKV
ELIAIGNGTASRETDKLAADLISQVKAELPRLTKIMVSEAGASVYSASELASEEFPNIDVSIRGAVSIARRLQDPLAELV
KIEPKAIGVGQYQHDVSQSQLSSSLEAVVEDCVNGVGVDVNMASAALLAQVAGLNKTLARNIVTHRDEQGRFNNRKALLK
VARLGPKAYEQAAGFLRISEGDNPLDGSSVHPEAYSLVESIAAAKGVSVAELIGNSELLKALEAKDFITSEFGLPTVTDI
LAELDKPGRDPRGEFKTATFKEGVEEIKDLKLDMILEGVVTNVTNFGAFVDVGVHQDGLVHISSMTDKFIDDPHKVVKAG
DIVKVKVMEVDAERRRIGLSMRLDDKAGDAPKSAPRPANHQNKGAPNKGANQQRGQQKTHKPKQQANAAMGNAFADAFAK
LKK

Sequences:

>Translated_803_residues
MPWAVVSLAKSPLSTRLDLYLMQNIAQLIAEELNVRQQQVIDTISLLDDGATVPFIARYRKEATGGLDDAQLRTLYSRLG
YLRDLNDRRNVILSSIEAQSKLTPELQAAINAADSKTRLEDLYLPYKPKRRTKGLIAIEAGIEPLADYLLANRQVDCEAV
ASEYINAEAGFADAKAVLDGARFILMERFAEDAELLQKIRVQVEQNAVFESRMVKGKEKEGAKFRDYFEHSEKLTKVPSH
RALAMLRGRNEGMLSLNINADPHQEPKQASYCEVIIIEHFKLGLTDSAVDTWLKTVVAATWKVKIALQMETEFLGRMRDT
AEQEAIKVFARNLGDLLMAAPAGAKATLGLDPGLRSGVKVAIVNDTGKLMAHTTIFPHAPQNQWDKSVRTLANLVKMHKV
ELIAIGNGTASRETDKLAADLISQVKAELPRLTKIMVSEAGASVYSASELASEEFPNIDVSIRGAVSIARRLQDPLAELV
KIEPKAIGVGQYQHDVSQSQLSSSLEAVVEDCVNGVGVDVNMASAALLAQVAGLNKTLARNIVTHRDEQGRFNNRKALLK
VARLGPKAYEQAAGFLRISEGDNPLDGSSVHPEAYSLVESIAAAKGVSVAELIGNSELLKALEAKDFITSEFGLPTVTDI
LAELDKPGRDPRGEFKTATFKEGVEEIKDLKLDMILEGVVTNVTNFGAFVDVGVHQDGLVHISSMTDKFIDDPHKVVKAG
DIVKVKVMEVDAERRRIGLSMRLDDKAGDAPKSAPRPANHQNKGAPNKGANQQRGQQKTHKPKQQANAAMGNAFADAFAK
LKK
>Mature_802_residues
PWAVVSLAKSPLSTRLDLYLMQNIAQLIAEELNVRQQQVIDTISLLDDGATVPFIARYRKEATGGLDDAQLRTLYSRLGY
LRDLNDRRNVILSSIEAQSKLTPELQAAINAADSKTRLEDLYLPYKPKRRTKGLIAIEAGIEPLADYLLANRQVDCEAVA
SEYINAEAGFADAKAVLDGARFILMERFAEDAELLQKIRVQVEQNAVFESRMVKGKEKEGAKFRDYFEHSEKLTKVPSHR
ALAMLRGRNEGMLSLNINADPHQEPKQASYCEVIIIEHFKLGLTDSAVDTWLKTVVAATWKVKIALQMETEFLGRMRDTA
EQEAIKVFARNLGDLLMAAPAGAKATLGLDPGLRSGVKVAIVNDTGKLMAHTTIFPHAPQNQWDKSVRTLANLVKMHKVE
LIAIGNGTASRETDKLAADLISQVKAELPRLTKIMVSEAGASVYSASELASEEFPNIDVSIRGAVSIARRLQDPLAELVK
IEPKAIGVGQYQHDVSQSQLSSSLEAVVEDCVNGVGVDVNMASAALLAQVAGLNKTLARNIVTHRDEQGRFNNRKALLKV
ARLGPKAYEQAAGFLRISEGDNPLDGSSVHPEAYSLVESIAAAKGVSVAELIGNSELLKALEAKDFITSEFGLPTVTDIL
AELDKPGRDPRGEFKTATFKEGVEEIKDLKLDMILEGVVTNVTNFGAFVDVGVHQDGLVHISSMTDKFIDDPHKVVKAGD
IVKVKVMEVDAERRRIGLSMRLDDKAGDAPKSAPRPANHQNKGAPNKGANQQRGQQKTHKPKQQANAAMGNAFADAFAKL
KK

Specific function: Unknown

COG id: COG2183

COG function: function code K; Transcriptional accessory protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S1 motif domain [H]

Homologues:

Organism=Homo sapiens, GI221136781, Length=801, Percent_Identity=31.0861423220974, Blast_Score=356, Evalue=4e-98,
Organism=Homo sapiens, GI27597090, Length=724, Percent_Identity=22.5138121546961, Blast_Score=106, Evalue=1e-22,
Organism=Escherichia coli, GI87082262, Length=757, Percent_Identity=61.9550858652576, Blast_Score=938, Evalue=0.0,
Organism=Escherichia coli, GI1787140, Length=76, Percent_Identity=40.7894736842105, Blast_Score=66, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17511129, Length=727, Percent_Identity=28.748280605227, Blast_Score=231, Evalue=1e-60,
Organism=Caenorhabditis elegans, GI17552892, Length=283, Percent_Identity=27.9151943462898, Blast_Score=76, Evalue=7e-14,
Organism=Saccharomyces cerevisiae, GI6321552, Length=191, Percent_Identity=29.8429319371728, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI62484314, Length=770, Percent_Identity=31.2987012987013, Blast_Score=364, Evalue=1e-100,
Organism=Drosophila melanogaster, GI24640080, Length=476, Percent_Identity=21.8487394957983, Blast_Score=93, Evalue=8e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003583
- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR003029
- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR022967
- InterPro:   IPR018974
- InterPro:   IPR023097 [H]

Pfam domain/function: PF00575 S1; PF09371 Tex_N [H]

EC number: NA

Molecular weight: Translated: 87722; Mature: 87591

Theoretical pI: Translated: 7.09; Mature: 7.09

Prosite motif: PS50126 S1 ; PS00041 HTH_ARAC_FAMILY_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPWAVVSLAKSPLSTRLDLYLMQNIAQLIAEELNVRQQQVIDTISLLDDGATVPFIARYR
CCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
KEATGGLDDAQLRTLYSRLGYLRDLNDRRNVILSSIEAQSKLTPELQAAINAADSKTRLE
HHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHCCCCHHHHH
DLYLPYKPKRRTKGLIAIEAGIEPLADYLLANRQVDCEAVASEYINAEAGFADAKAVLDG
HHCCCCCCCCCCCCEEEEECCHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCHHHHHHHHH
ARFILMERFAEDAELLQKIRVQVEQNAVFESRMVKGKEKEGAKFRDYFEHSEKLTKVPSH
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCH
RALAMLRGRNEGMLSLNINADPHQEPKQASYCEVIIIEHFKLGLTDSAVDTWLKTVVAAT
HHHHHHHCCCCCEEEEECCCCCCCCCCCCCCEEEEEEECHHCCCCHHHHHHHHHHHHHHH
WKVKIALQMETEFLGRMRDTAEQEAIKVFARNLGDLLMAAPAGAKATLGLDPGLRSGVKV
EEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCEE
AIVNDTGKLMAHTTIFPHAPQNQWDKSVRTLANLVKMHKVELIAIGNGTASRETDKLAAD
EEEECCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCHHHHHHHH
LISQVKAELPRLTKIMVSEAGASVYSASELASEEFPNIDVSIRGAVSIARRLQDPLAELV
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHH
KIEPKAIGVGQYQHDVSQSQLSSSLEAVVEDCVNGVGVDVNMASAALLAQVAGLNKTLAR
HCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCHHHHHH
NIVTHRDEQGRFNNRKALLKVARLGPKAYEQAAGFLRISEGDNPLDGSSVHPEAYSLVES
HHHHCCCCCCCCCCHHHHHHHHHCCHHHHHHHCCEEEECCCCCCCCCCCCCHHHHHHHHH
IAAAKGVSVAELIGNSELLKALEAKDFITSEFGLPTVTDILAELDKPGRDPRGEFKTATF
HHHHCCCHHHHHHCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCCHHH
KEGVEEIKDLKLDMILEGVVTNVTNFGAFVDVGVHQDGLVHISSMTDKFIDDPHKVVKAG
HHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCEEEHHHHHHHCCCHHHHHHCC
DIVKVKVMEVDAERRRIGLSMRLDDKAGDAPKSAPRPANHQNKGAPNKGANQQRGQQKTH
CEEEEEEEEECHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCHHHC
KPKQQANAAMGNAFADAFAKLKK
CCHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
PWAVVSLAKSPLSTRLDLYLMQNIAQLIAEELNVRQQQVIDTISLLDDGATVPFIARYR
CCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
KEATGGLDDAQLRTLYSRLGYLRDLNDRRNVILSSIEAQSKLTPELQAAINAADSKTRLE
HHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHCCCCHHHHH
DLYLPYKPKRRTKGLIAIEAGIEPLADYLLANRQVDCEAVASEYINAEAGFADAKAVLDG
HHCCCCCCCCCCCCEEEEECCHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCHHHHHHHHH
ARFILMERFAEDAELLQKIRVQVEQNAVFESRMVKGKEKEGAKFRDYFEHSEKLTKVPSH
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCH
RALAMLRGRNEGMLSLNINADPHQEPKQASYCEVIIIEHFKLGLTDSAVDTWLKTVVAAT
HHHHHHHCCCCCEEEEECCCCCCCCCCCCCCEEEEEEECHHCCCCHHHHHHHHHHHHHHH
WKVKIALQMETEFLGRMRDTAEQEAIKVFARNLGDLLMAAPAGAKATLGLDPGLRSGVKV
EEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCEE
AIVNDTGKLMAHTTIFPHAPQNQWDKSVRTLANLVKMHKVELIAIGNGTASRETDKLAAD
EEEECCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCHHHHHHHH
LISQVKAELPRLTKIMVSEAGASVYSASELASEEFPNIDVSIRGAVSIARRLQDPLAELV
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHH
KIEPKAIGVGQYQHDVSQSQLSSSLEAVVEDCVNGVGVDVNMASAALLAQVAGLNKTLAR
HCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCHHHHHH
NIVTHRDEQGRFNNRKALLKVARLGPKAYEQAAGFLRISEGDNPLDGSSVHPEAYSLVES
HHHHCCCCCCCCCCHHHHHHHHHCCHHHHHHHCCEEEECCCCCCCCCCCCCHHHHHHHHH
IAAAKGVSVAELIGNSELLKALEAKDFITSEFGLPTVTDILAELDKPGRDPRGEFKTATF
HHHHCCCHHHHHHCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCCHHH
KEGVEEIKDLKLDMILEGVVTNVTNFGAFVDVGVHQDGLVHISSMTDKFIDDPHKVVKAG
HHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCEEEHHHHHHHCCCHHHHHHCC
DIVKVKVMEVDAERRRIGLSMRLDDKAGDAPKSAPRPANHQNKGAPNKGANQQRGQQKTH
CEEEEEEEEECHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCHHHC
KPKQQANAAMGNAFADAFAKLKK
CCHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]