| Definition | Shewanella pealeana ATCC 700345 chromosome, complete genome. |
|---|---|
| Accession | NC_009901 |
| Length | 5,174,581 |
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The map label for this gene is thiE [H]
Identifier: 157962203
GI number: 157962203
Start: 2903306
End: 2904898
Strand: Reverse
Name: thiE [H]
Synonym: Spea_2382
Alternate gene names: 157962203
Gene position: 2904898-2903306 (Counterclockwise)
Preceding gene: 157962204
Following gene: 157962202
Centisome position: 56.14
GC content: 47.71
Gene sequence:
>1593_bases ATGGCAAACGCACATACATTGCCTGTTAGGCTTCCTGTTGTATGGACGATAGCGGGCTCTGATAGTGGCGGCGGTGCAGG CATTCAAGCGGATCTGGCAACAATGTCAGATCTTGATGCCCACGCCTGCAGCGTTATCACTGCGGTGACAGCACAGAGCT CTGTAACTGTGGCATTGGTTGAGTCTGTATCAAGTCAAATGTTGAAGTCTCAGCTAGACACCTTAGTTAGCGACCTACCG CCAGCAGCCATTAAAATTGGCTTGCTGGCCGAGCAGGCTCAAATTGATTATCTAGCCAAATGGTTAGCTAAGCAGCAAGC TAGTTGGCGTCAATCTGGCATTGTAGTGCCTATTATTTTAGACCCTGTGATGGTGGCTACCTGCGGTGATGCACTGGCAA ATGGCGGAAGGCTTGATTTTACGCCGTTTAAAGGATTACTCACATTAATCACGCCTAATGTGAGTGAGTTAGCCATTCTG GCTGCAACAGAGCTTGAGAGTGTTGATGCATGTATCTCGGCAGCCAAACAGCTATCAGAACAGTTAAGCACTTCGGTGCT AGCCAAAGGTGGCGATCTTGGTCCAGCCTGGTGTCAGCATCAGGCTAATGATTTACTCGTTTGTACTGATGTTGAAGGAA TATCTGATAAGCATCAGTGGCAGAGTTTTTGGTTATCAAGTCATCGAGTCAATAGCCAAAATAGTCATGGTACAGGCTGC ACCTTGTCATCGGCAATTGCATCTGTAATGGCCCATGGCTTTGTGCTCAATGATGCGATTGTTGTGGCAAAGGCCTATGT GAATGCAGGACTGATCGCCAGCTATCAGCCGGGCAGTGGACCTGGATGCTTGGCAAGAACGGCATGGCCAAAAGACTTAC AGCAATTTCCCTATATCAAAGTTATCACAGCAAGCGATACCGAACCTATGTCGCTTGCTGCTTGGGAGTTGATGAATAAT CAGCGAGGCGACTTTAAGCAGATTGATGGCACCTTGGGATTATATCCTGTAGTTGCTGATGTTGAATTGCTACAAATCTT GTTAAAAGCGGGGGCTAAAACAATTCAGCTGCGAGTTAAGGATGCAAGTTCGCCAACCCTTGAAGCGCAGATAATCAAAG CCATTGCTCTAGGTCGTGACTATCAATCACGAGTGTTCATTAACGATCACTGGCAGCTTGCCATTAAACATCAAGCTTAC GGGGTTCACCTTGGTCAGGAAGACTTGCTCGACAGTAATTTAAAGCAGCTACGTGAAGCTGACATTGCACTTGGGTTGTC GAGTCATAGCTATTTCGAAATTTTGTTGGCAAAGCAACATCAGCCATCATATATCGCATTTGGGCATATATTTCCCACCA CCACCAAGCAGATGCCATCTTTGCCTCAGGGGCTAGAAAAACTGAGCCGCTATGTTTCTTTGATGAAAGGCGAGCTGCCA ATCGTCGCAATTGGCGGCATAGATGCAGCGCGCCTTAGAAGTGTTAAAGCAACGGGTGTGGATGACATCGCAGTGGTGCG AGCTTTGACTGAGGCCGATGATCCCACTGCGGCGTTTACGGCTCTGAATAGGGCATGGGCTGATGAGAAATAG
Upstream 100 bases:
>100_bases AAGGCATGGCGCAAATGTCGGCCGAGTTTAAAGCTAAAGGTGCTGAACTTTATCATGAAGCGAGTCATAAACAGCCTGAT GTTGCGTTAGAGGATTAATC
Downstream 100 bases:
>100_bases TATGTCACTCACTGATAGTGATTTTTTACGATACTCGCGTCAGGTGTTATTGCCTGAAGTTGGCGAGGCTGGTCAGATTG CCATTTCCAAGTCTCATGTT
Product: phosphomethylpyrimidine kinase
Products: NA
Alternate protein names: TMP pyrophosphorylase; TMP-PPase; Thiamine-phosphate synthase [H]
Number of amino acids: Translated: 530; Mature: 529
Protein sequence:
>530_residues MANAHTLPVRLPVVWTIAGSDSGGGAGIQADLATMSDLDAHACSVITAVTAQSSVTVALVESVSSQMLKSQLDTLVSDLP PAAIKIGLLAEQAQIDYLAKWLAKQQASWRQSGIVVPIILDPVMVATCGDALANGGRLDFTPFKGLLTLITPNVSELAIL AATELESVDACISAAKQLSEQLSTSVLAKGGDLGPAWCQHQANDLLVCTDVEGISDKHQWQSFWLSSHRVNSQNSHGTGC TLSSAIASVMAHGFVLNDAIVVAKAYVNAGLIASYQPGSGPGCLARTAWPKDLQQFPYIKVITASDTEPMSLAAWELMNN QRGDFKQIDGTLGLYPVVADVELLQILLKAGAKTIQLRVKDASSPTLEAQIIKAIALGRDYQSRVFINDHWQLAIKHQAY GVHLGQEDLLDSNLKQLREADIALGLSSHSYFEILLAKQHQPSYIAFGHIFPTTTKQMPSLPQGLEKLSRYVSLMKGELP IVAIGGIDAARLRSVKATGVDDIAVVRALTEADDPTAAFTALNRAWADEK
Sequences:
>Translated_530_residues MANAHTLPVRLPVVWTIAGSDSGGGAGIQADLATMSDLDAHACSVITAVTAQSSVTVALVESVSSQMLKSQLDTLVSDLP PAAIKIGLLAEQAQIDYLAKWLAKQQASWRQSGIVVPIILDPVMVATCGDALANGGRLDFTPFKGLLTLITPNVSELAIL AATELESVDACISAAKQLSEQLSTSVLAKGGDLGPAWCQHQANDLLVCTDVEGISDKHQWQSFWLSSHRVNSQNSHGTGC TLSSAIASVMAHGFVLNDAIVVAKAYVNAGLIASYQPGSGPGCLARTAWPKDLQQFPYIKVITASDTEPMSLAAWELMNN QRGDFKQIDGTLGLYPVVADVELLQILLKAGAKTIQLRVKDASSPTLEAQIIKAIALGRDYQSRVFINDHWQLAIKHQAY GVHLGQEDLLDSNLKQLREADIALGLSSHSYFEILLAKQHQPSYIAFGHIFPTTTKQMPSLPQGLEKLSRYVSLMKGELP IVAIGGIDAARLRSVKATGVDDIAVVRALTEADDPTAAFTALNRAWADEK >Mature_529_residues ANAHTLPVRLPVVWTIAGSDSGGGAGIQADLATMSDLDAHACSVITAVTAQSSVTVALVESVSSQMLKSQLDTLVSDLPP AAIKIGLLAEQAQIDYLAKWLAKQQASWRQSGIVVPIILDPVMVATCGDALANGGRLDFTPFKGLLTLITPNVSELAILA ATELESVDACISAAKQLSEQLSTSVLAKGGDLGPAWCQHQANDLLVCTDVEGISDKHQWQSFWLSSHRVNSQNSHGTGCT LSSAIASVMAHGFVLNDAIVVAKAYVNAGLIASYQPGSGPGCLARTAWPKDLQQFPYIKVITASDTEPMSLAAWELMNNQ RGDFKQIDGTLGLYPVVADVELLQILLKAGAKTIQLRVKDASSPTLEAQIIKAIALGRDYQSRVFINDHWQLAIKHQAYG VHLGQEDLLDSNLKQLREADIALGLSSHSYFEILLAKQHQPSYIAFGHIFPTTTKQMPSLPQGLEKLSRYVSLMKGELPI VAIGGIDAARLRSVKATGVDDIAVVRALTEADDPTAAFTALNRAWADEK
Specific function: Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP) [H]
COG id: COG0352
COG function: function code H; Thiamine monophosphate synthase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the TMP-PPase family [H]
Homologues:
Organism=Escherichia coli, GI1790426, Length=191, Percent_Identity=56.020942408377, Blast_Score=211, Evalue=1e-55, Organism=Escherichia coli, GI1788420, Length=259, Percent_Identity=34.3629343629344, Blast_Score=117, Evalue=2e-27, Organism=Saccharomyces cerevisiae, GI6325378, Length=268, Percent_Identity=31.7164179104478, Blast_Score=102, Evalue=1e-22, Organism=Saccharomyces cerevisiae, GI6324997, Length=267, Percent_Identity=32.2097378277154, Blast_Score=87, Evalue=7e-18, Organism=Saccharomyces cerevisiae, GI6324517, Length=267, Percent_Identity=32.2097378277154, Blast_Score=86, Evalue=1e-17,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013785 - InterPro: IPR022998 - InterPro: IPR003733 [H]
Pfam domain/function: PF02581 TMP-TENI [H]
EC number: =2.5.1.3 [H]
Molecular weight: Translated: 56600; Mature: 56469
Theoretical pI: Translated: 5.73; Mature: 5.73
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MANAHTLPVRLPVVWTIAGSDSGGGAGIQADLATMSDLDAHACSVITAVTAQSSVTVALV CCCCCEEEEEEEEEEEEECCCCCCCCCCEEHHHHHHCCCHHHHHHHHHHHCCCCCHHHHH ESVSSQMLKSQLDTLVSDLPPAAIKIGLLAEQAQIDYLAKWLAKQQASWRQSGIVVPIIL HHHHHHHHHHHHHHHHHHCCHHHEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEC DPVMVATCGDALANGGRLDFTPFKGLLTLITPNVSELAILAATELESVDACISAAKQLSE CCHHHHHHHHHHCCCCCEECCHHHCCHHHCCCCHHHEEEEEHHHHHHHHHHHHHHHHHHH QLSTSVLAKGGDLGPAWCQHQANDLLVCTDVEGISDKHQWQSFWLSSHRVNSQNSHGTGC HHHHHHHHCCCCCCHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCC TLSSAIASVMAHGFVLNDAIVVAKAYVNAGLIASYQPGSGPGCLARTAWPKDLQQFPYIK CHHHHHHHHHHCCCHHCCHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCHHHHHHCCEEE VITASDTEPMSLAAWELMNNQRGDFKQIDGTLGLYPVVADVELLQILLKAGAKTIQLRVK EEECCCCCCCHHHHHHHHCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEEE DASSPTLEAQIIKAIALGRDYQSRVFINDHWQLAIKHQAYGVHLGQEDLLDSNLKQLREA CCCCCCHHHHHHHHHHHCCCCCCEEEEECCEEEEEEEEEEEEECCHHHHHHHHHHHHHHH DIALGLSSHSYFEILLAKQHQPSYIAFGHIFPTTTKQMPSLPQGLEKLSRYVSLMKGELP HHEEECCCCCEEEEEEECCCCCCEEEEEEECCCCHHHCCCCHHHHHHHHHHHHHHCCCCC IVAIGGIDAARLRSVKATGVDDIAVVRALTEADDPTAAFTALNRAWADEK EEEECCCCHHHHHCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHCCCCC >Mature Secondary Structure ANAHTLPVRLPVVWTIAGSDSGGGAGIQADLATMSDLDAHACSVITAVTAQSSVTVALV CCCCEEEEEEEEEEEEECCCCCCCCCCEEHHHHHHCCCHHHHHHHHHHHCCCCCHHHHH ESVSSQMLKSQLDTLVSDLPPAAIKIGLLAEQAQIDYLAKWLAKQQASWRQSGIVVPIIL HHHHHHHHHHHHHHHHHHCCHHHEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEC DPVMVATCGDALANGGRLDFTPFKGLLTLITPNVSELAILAATELESVDACISAAKQLSE CCHHHHHHHHHHCCCCCEECCHHHCCHHHCCCCHHHEEEEEHHHHHHHHHHHHHHHHHHH QLSTSVLAKGGDLGPAWCQHQANDLLVCTDVEGISDKHQWQSFWLSSHRVNSQNSHGTGC HHHHHHHHCCCCCCHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCC TLSSAIASVMAHGFVLNDAIVVAKAYVNAGLIASYQPGSGPGCLARTAWPKDLQQFPYIK CHHHHHHHHHHCCCHHCCHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCHHHHHHCCEEE VITASDTEPMSLAAWELMNNQRGDFKQIDGTLGLYPVVADVELLQILLKAGAKTIQLRVK EEECCCCCCCHHHHHHHHCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEEE DASSPTLEAQIIKAIALGRDYQSRVFINDHWQLAIKHQAYGVHLGQEDLLDSNLKQLREA CCCCCCHHHHHHHHHHHCCCCCCEEEEECCEEEEEEEEEEEEECCHHHHHHHHHHHHHHH DIALGLSSHSYFEILLAKQHQPSYIAFGHIFPTTTKQMPSLPQGLEKLSRYVSLMKGELP HHEEECCCCCEEEEEEECCCCCCEEEEEEECCCCHHHCCCCHHHHHHHHHHHHHHCCCCC IVAIGGIDAARLRSVKATGVDDIAVVRALTEADDPTAAFTALNRAWADEK EEEECCCCHHHHHCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA