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The map label for this gene is ydcP [H]

Identifier: 157962003

GI number: 157962003

Start: 2643631

End: 2646048

Strand: Reverse

Name: ydcP [H]

Synonym: Spea_2182

Alternate gene names: 157962003

Gene position: 2646048-2643631 (Counterclockwise)

Preceding gene: 157962006

Following gene: 157962002

Centisome position: 51.14

GC content: 44.91

Gene sequence:

>2418_bases
ATGAGAAAACTTGAATTACTCGCACCAGGTGGTGATATCGAGTCTATTAAAGCCGCCATTGTTGCAGGAGCTGACGCTGT
TTACTGTGGCCTAAATAGCTTTAATGCTCGTACCCGAGCCGAGAATTTAAGTTTTGAAGATCTATATGGCCTGCTTCGTA
TTGCACATCAGCACGACTGCCAACTGTTTTTGACACTCAACATCATAGTGTTAGAGCAGGAACTACCGGCATTACTCAAG
CTGTTGAACCAACTAGTCAACACCGGCATAGATGGGGTAATTGTTCAGGACTTTGGCTTGTTTTATCTATTGAAGCAACA
TTACCCCAGCCTTGATATTCACGCATCGACTCAAGTGACTACCCATAACAGCGGACAACTCGAGTTTCTCTCTAAGCTTG
GCGCCTCAAGGGCTAACCTATCTAGGGAGCTTAACCTCGAGGAAATTAGGCTGATGTCAGATAAGGCTCACAGTCTAGAT
ATGCTGACAGAGGTATTTGTACACGGATCTAACTGCATTGGCTTTTCCGGTCTCTGTTATTTCAGCTCTGCTCATGGCGG
TAATTCAGGCAATCGTGGCCGTTGTAGCCAACCGTGTCGAGATCAGTATCAAACTACGGATGTTGGCGCACAATATCCAC
TAAATTTAAAAGACAATTCGGCGTATTCTGATCTTAACGCCCTTTATGCTGCCGGCGCGGATTCGTTAAAGGTTGAGGGG
CGAATAAAGAAATCTCACTATGTCTACCGAGTCATTGATACCTGGCGTAAGCAGATAAGCCGTCTTGAGCAGAATCAAAT
CATGAGCTCAGACAAAGCTCCACTCTACACAGTATTTAACCGTGATTTTTCTAACGGTTATCTGCAGGGCGCTGTCGGTA
AGAATATGTATATCGATAACCCTCGCGACAACGCGGTGCAGCACTTCACGCGAATAGAGAGTTTGAAGCTAGCCTCTGGA
GAAAACACCGAAGGCTCAGTGAATGTTAAGAAAGCACTCTATGATGAAAAGACTGAGATCATTGAGACCCTTGCCGGAAA
AATTGCCAAGCTAAGTTTAGACAAACCCATTGTGAGCTTACGCTTTAGTGGTCAACAAAACCAAGCATTACGGATTTCAG
TAAAGCTTCAGACTAATAACCTCAAAGATAAGTATCGTGCGTTTTATGTGGAGTCAGTCTCTGTGCTACTTCCATCAGAC
AAGTACGGCTTGCAGACAGACGAGCTCACGAAACGCTTCGCGAGCATTGGTGGACTAGAGTTCGGTCTCGAACCTATCCA
CTATGACGAACTTGCTGAAAACCTATTCGTCCCTTTTAAAGAATTAACCGAGATGAAACGCCAAATTGTTTGCTGGTTAA
ACGATGGCAGAGAGCATGTTGAGCCCCTTACCTTGCAAACGGTGCGCAAGCATGTTGCAAACGCTTGCGGACAATTAGCC
ATAGGCGCAGCTCAACAGCCTAACCCTAGCATTGATAAACACACAGGCGTGTCGATTCTTATCGCGAATAGACGAGATCT
GGCCCTATACCGCCAGATTAAACAATCACTCTACGGTAAAGACGTCAGTGTATATTATGCAATTCCTGATGCGATATCCG
CTGAGCGTGAAAAGCTGAGTCTATTGTTTAACCAGGAGCCTGAGCTAATTCCTTGGTTTGGCGCAGTGATCATGGAGCCT
GATTTCATTGCGGCAAAGCAATTACTCGCCGACATTAAGCCTAGAATCATTGTCAGCAACAATAGCGGCGTGGGTTTTGC
TGCTAGCCAAAGTGGCATTGAGTGGGTTGCAGGCCCTTATTTGAACATAAGCAACTCTCTGTGTATGCATAGCCTACAGC
AGCAAGGCTGTGTTGGTGCATTCGTTTCTAATGAACTGAATAAGCAGCAGATAAAAGCCATTAAGGCGCCAAGCAACTTC
AAGTTACATTACAGTCTATATCACCCTGTGATGTTAATGAGCAGTCGCCAATGTCTGTTCTTGCAATCATGTGGCTGCGA
TAAAGCGGTTATGGATAAGGAGTGCTTAACGGTTTGTAAAAAGACGAGCTCCTTGACCAATGTTAAAGGCATCGACTTTG
TAATCGATAAGAAGCGCCGTGAGCATAATGCCTTATATGGAAGCGAGCACTTCTATAACCCTCAGATCTTGACTGAACTT
GAAGGCTATTTCGATTCCGTGCTACTTGATTTGCGCTCTGTTTCTACCAAGAGTCAGCTACAACAAAGCCAATTTGACAC
TGTAGACTTGCTTGTTGAGTCACTTTCAAAACAGGCACCACAACAACAATCACAGAATACATCAGAAGCCTCACAAGAAC
TGAGACAGAGGCTAAACAGCAGTGAAGCAGAGCTCTCTTGCAAGTTACAGGGGTTGATTGCTAACACCACCAATGAGCAA
TATCGAAAAGGTTTGTAA

Upstream 100 bases:

>100_bases
TTCTAGCTTGCTCTTACAATAAGCTTTGATCGTCTCGACTACGAGAGGTCTTTACCCCCCATATCTACATATTGCCATTT
GCGTGATAACTAGGAATACC

Downstream 100 bases:

>100_bases
TACCGATTGCACATGGAAAAATCCAACACCACACGATAAAAAACCACAAAGCATAAATACCGAGATACACCATTTACTCT
TGCAATAGAGTAAATGGTAA

Product: peptidase U32

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 805; Mature: 805

Protein sequence:

>805_residues
MRKLELLAPGGDIESIKAAIVAGADAVYCGLNSFNARTRAENLSFEDLYGLLRIAHQHDCQLFLTLNIIVLEQELPALLK
LLNQLVNTGIDGVIVQDFGLFYLLKQHYPSLDIHASTQVTTHNSGQLEFLSKLGASRANLSRELNLEEIRLMSDKAHSLD
MLTEVFVHGSNCIGFSGLCYFSSAHGGNSGNRGRCSQPCRDQYQTTDVGAQYPLNLKDNSAYSDLNALYAAGADSLKVEG
RIKKSHYVYRVIDTWRKQISRLEQNQIMSSDKAPLYTVFNRDFSNGYLQGAVGKNMYIDNPRDNAVQHFTRIESLKLASG
ENTEGSVNVKKALYDEKTEIIETLAGKIAKLSLDKPIVSLRFSGQQNQALRISVKLQTNNLKDKYRAFYVESVSVLLPSD
KYGLQTDELTKRFASIGGLEFGLEPIHYDELAENLFVPFKELTEMKRQIVCWLNDGREHVEPLTLQTVRKHVANACGQLA
IGAAQQPNPSIDKHTGVSILIANRRDLALYRQIKQSLYGKDVSVYYAIPDAISAEREKLSLLFNQEPELIPWFGAVIMEP
DFIAAKQLLADIKPRIIVSNNSGVGFAASQSGIEWVAGPYLNISNSLCMHSLQQQGCVGAFVSNELNKQQIKAIKAPSNF
KLHYSLYHPVMLMSSRQCLFLQSCGCDKAVMDKECLTVCKKTSSLTNVKGIDFVIDKKRREHNALYGSEHFYNPQILTEL
EGYFDSVLLDLRSVSTKSQLQQSQFDTVDLLVESLSKQAPQQQSQNTSEASQELRQRLNSSEAELSCKLQGLIANTTNEQ
YRKGL

Sequences:

>Translated_805_residues
MRKLELLAPGGDIESIKAAIVAGADAVYCGLNSFNARTRAENLSFEDLYGLLRIAHQHDCQLFLTLNIIVLEQELPALLK
LLNQLVNTGIDGVIVQDFGLFYLLKQHYPSLDIHASTQVTTHNSGQLEFLSKLGASRANLSRELNLEEIRLMSDKAHSLD
MLTEVFVHGSNCIGFSGLCYFSSAHGGNSGNRGRCSQPCRDQYQTTDVGAQYPLNLKDNSAYSDLNALYAAGADSLKVEG
RIKKSHYVYRVIDTWRKQISRLEQNQIMSSDKAPLYTVFNRDFSNGYLQGAVGKNMYIDNPRDNAVQHFTRIESLKLASG
ENTEGSVNVKKALYDEKTEIIETLAGKIAKLSLDKPIVSLRFSGQQNQALRISVKLQTNNLKDKYRAFYVESVSVLLPSD
KYGLQTDELTKRFASIGGLEFGLEPIHYDELAENLFVPFKELTEMKRQIVCWLNDGREHVEPLTLQTVRKHVANACGQLA
IGAAQQPNPSIDKHTGVSILIANRRDLALYRQIKQSLYGKDVSVYYAIPDAISAEREKLSLLFNQEPELIPWFGAVIMEP
DFIAAKQLLADIKPRIIVSNNSGVGFAASQSGIEWVAGPYLNISNSLCMHSLQQQGCVGAFVSNELNKQQIKAIKAPSNF
KLHYSLYHPVMLMSSRQCLFLQSCGCDKAVMDKECLTVCKKTSSLTNVKGIDFVIDKKRREHNALYGSEHFYNPQILTEL
EGYFDSVLLDLRSVSTKSQLQQSQFDTVDLLVESLSKQAPQQQSQNTSEASQELRQRLNSSEAELSCKLQGLIANTTNEQ
YRKGL
>Mature_805_residues
MRKLELLAPGGDIESIKAAIVAGADAVYCGLNSFNARTRAENLSFEDLYGLLRIAHQHDCQLFLTLNIIVLEQELPALLK
LLNQLVNTGIDGVIVQDFGLFYLLKQHYPSLDIHASTQVTTHNSGQLEFLSKLGASRANLSRELNLEEIRLMSDKAHSLD
MLTEVFVHGSNCIGFSGLCYFSSAHGGNSGNRGRCSQPCRDQYQTTDVGAQYPLNLKDNSAYSDLNALYAAGADSLKVEG
RIKKSHYVYRVIDTWRKQISRLEQNQIMSSDKAPLYTVFNRDFSNGYLQGAVGKNMYIDNPRDNAVQHFTRIESLKLASG
ENTEGSVNVKKALYDEKTEIIETLAGKIAKLSLDKPIVSLRFSGQQNQALRISVKLQTNNLKDKYRAFYVESVSVLLPSD
KYGLQTDELTKRFASIGGLEFGLEPIHYDELAENLFVPFKELTEMKRQIVCWLNDGREHVEPLTLQTVRKHVANACGQLA
IGAAQQPNPSIDKHTGVSILIANRRDLALYRQIKQSLYGKDVSVYYAIPDAISAEREKLSLLFNQEPELIPWFGAVIMEP
DFIAAKQLLADIKPRIIVSNNSGVGFAASQSGIEWVAGPYLNISNSLCMHSLQQQGCVGAFVSNELNKQQIKAIKAPSNF
KLHYSLYHPVMLMSSRQCLFLQSCGCDKAVMDKECLTVCKKTSSLTNVKGIDFVIDKKRREHNALYGSEHFYNPQILTEL
EGYFDSVLLDLRSVSTKSQLQQSQFDTVDLLVESLSKQAPQQQSQNTSEASQELRQRLNSSEAELSCKLQGLIANTTNEQ
YRKGL

Specific function: Unknown

COG id: COG0826

COG function: function code O; Collagenase and related proteases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase U32 family [H]

Homologues:

Organism=Escherichia coli, GI87081910, Length=263, Percent_Identity=39.1634980988593, Blast_Score=184, Evalue=3e-47,
Organism=Escherichia coli, GI1788397, Length=311, Percent_Identity=30.2250803858521, Blast_Score=129, Evalue=6e-31,
Organism=Escherichia coli, GI1789548, Length=297, Percent_Identity=28.956228956229, Blast_Score=106, Evalue=7e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020988
- InterPro:   IPR001539 [H]

Pfam domain/function: PF12392 DUF3656; PF01136 Peptidase_U32 [H]

EC number: 3.4.-.- [C]

Molecular weight: Translated: 89888; Mature: 89888

Theoretical pI: Translated: 7.25; Mature: 7.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKLELLAPGGDIESIKAAIVAGADAVYCGLNSFNARTRAENLSFEDLYGLLRIAHQHDC
CCCEEEECCCCCHHHHHHHHHCCCCEEEECCCCCCCHHHHCCCCHHHHHHHHHHHHCCCC
QLFLTLNIIVLEQELPALLKLLNQLVNTGIDGVIVQDFGLFYLLKQHYPSLDIHASTQVT
EEEEEEEEEEECHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHCCCCEEEECEEEE
THNSGQLEFLSKLGASRANLSRELNLEEIRLMSDKAHSLDMLTEVFVHGSNCIGFSGLCY
ECCCCHHHHHHHCCCCHHCCHHCCCHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEE
FSSAHGGNSGNRGRCSQPCRDQYQTTDVGAQYPLNLKDNSAYSDLNALYAAGADSLKVEG
EECCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEE
RIKKSHYVYRVIDTWRKQISRLEQNQIMSSDKAPLYTVFNRDFSNGYLQGAVGKNMYIDN
EEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCEEECCCCCCCEECC
PRDNAVQHFTRIESLKLASGENTEGSVNVKKALYDEKTEIIETLAGKIAKLSLDKPIVSL
CCHHHHHHHHHHHHEEECCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHEEECCCCEEEE
RFSGQQNQALRISVKLQTNNLKDKYRAFYVESVSVLLPSDKYGLQTDELTKRFASIGGLE
EECCCCCCEEEEEEEEECCCCHHHHHHHHEEEEEEEECCCCCCCCHHHHHHHHHHHCCHH
FGLEPIHYDELAENLFVPFKELTEMKRQIVCWLNDGREHVEPLTLQTVRKHVANACGQLA
CCCCCCCHHHHHHHHCCCHHHHHHHHHHEEEEECCCHHHCCCHHHHHHHHHHHHHHCCEE
IGAAQQPNPSIDKHTGVSILIANRRDLALYRQIKQSLYGKDVSVYYAIPDAISAEREKLS
ECCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHH
LLFNQEPELIPWFGAVIMEPDFIAAKQLLADIKPRIIVSNNSGVGFAASQSGIEWVAGPY
HHCCCCCCEEHHHHHHHCCCCHHHHHHHHHCCCCEEEEECCCCCCEEECCCCCCEECCCC
LNISNSLCMHSLQQQGCVGAFVSNELNKQQIKAIKAPSNFKLHYSLYHPVMLMSSRQCLF
CCCCHHHHHHHHHHCCCEEHHHHCCCCHHHHHHCCCCCCCEEEEEECCHHHHHCCCCEEE
LQSCGCDKAVMDKECLTVCKKTSSLTNVKGIDFVIDKKRREHNALYGSEHFYNPQILTEL
EECCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEECCHHHHCCCCCCCCCCCCCHHHHHH
EGYFDSVLLDLRSVSTKSQLQQSQFDTVDLLVESLSKQAPQQQSQNTSEASQELRQRLNS
HHHHHHHHHHHHHCCHHHHHHHHHCHHHHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHCC
SEAELSCKLQGLIANTTNEQYRKGL
CCCEEEEEEEEEEECCCCHHHHCCC
>Mature Secondary Structure
MRKLELLAPGGDIESIKAAIVAGADAVYCGLNSFNARTRAENLSFEDLYGLLRIAHQHDC
CCCEEEECCCCCHHHHHHHHHCCCCEEEECCCCCCCHHHHCCCCHHHHHHHHHHHHCCCC
QLFLTLNIIVLEQELPALLKLLNQLVNTGIDGVIVQDFGLFYLLKQHYPSLDIHASTQVT
EEEEEEEEEEECHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHCCCCEEEECEEEE
THNSGQLEFLSKLGASRANLSRELNLEEIRLMSDKAHSLDMLTEVFVHGSNCIGFSGLCY
ECCCCHHHHHHHCCCCHHCCHHCCCHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEE
FSSAHGGNSGNRGRCSQPCRDQYQTTDVGAQYPLNLKDNSAYSDLNALYAAGADSLKVEG
EECCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEE
RIKKSHYVYRVIDTWRKQISRLEQNQIMSSDKAPLYTVFNRDFSNGYLQGAVGKNMYIDN
EEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCEEECCCCCCCEECC
PRDNAVQHFTRIESLKLASGENTEGSVNVKKALYDEKTEIIETLAGKIAKLSLDKPIVSL
CCHHHHHHHHHHHHEEECCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHEEECCCCEEEE
RFSGQQNQALRISVKLQTNNLKDKYRAFYVESVSVLLPSDKYGLQTDELTKRFASIGGLE
EECCCCCCEEEEEEEEECCCCHHHHHHHHEEEEEEEECCCCCCCCHHHHHHHHHHHCCHH
FGLEPIHYDELAENLFVPFKELTEMKRQIVCWLNDGREHVEPLTLQTVRKHVANACGQLA
CCCCCCCHHHHHHHHCCCHHHHHHHHHHEEEEECCCHHHCCCHHHHHHHHHHHHHHCCEE
IGAAQQPNPSIDKHTGVSILIANRRDLALYRQIKQSLYGKDVSVYYAIPDAISAEREKLS
ECCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHH
LLFNQEPELIPWFGAVIMEPDFIAAKQLLADIKPRIIVSNNSGVGFAASQSGIEWVAGPY
HHCCCCCCEEHHHHHHHCCCCHHHHHHHHHCCCCEEEEECCCCCCEEECCCCCCEECCCC
LNISNSLCMHSLQQQGCVGAFVSNELNKQQIKAIKAPSNFKLHYSLYHPVMLMSSRQCLF
CCCCHHHHHHHHHHCCCEEHHHHCCCCHHHHHHCCCCCCCEEEEEECCHHHHHCCCCEEE
LQSCGCDKAVMDKECLTVCKKTSSLTNVKGIDFVIDKKRREHNALYGSEHFYNPQILTEL
EECCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEECCHHHHCCCCCCCCCCCCCHHHHHH
EGYFDSVLLDLRSVSTKSQLQQSQFDTVDLLVESLSKQAPQQQSQNTSEASQELRQRLNS
HHHHHHHHHHHHHCCHHHHHHHHHCHHHHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHCC
SEAELSCKLQGLIANTTNEQYRKGL
CCCEEEEEEEEEEECCCCHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]