| Definition | Shewanella pealeana ATCC 700345 chromosome, complete genome. |
|---|---|
| Accession | NC_009901 |
| Length | 5,174,581 |
Click here to switch to the map view.
The map label for this gene is yfjZ [H]
Identifier: 157961085
GI number: 157961085
Start: 1529279
End: 1529620
Strand: Reverse
Name: yfjZ [H]
Synonym: Spea_1257
Alternate gene names: 157961085
Gene position: 1529620-1529279 (Counterclockwise)
Preceding gene: 157961086
Following gene: 157961084
Centisome position: 29.56
GC content: 50.29
Gene sequence:
>342_bases ATGACAACGATTCAACCATCTATGCCCTATCAATGGGGTTTACAGCGTAATATTACGCCGCGATTTGGTGCGCGGCTTAT TCTGCAAGGCAGTCGCTTAGACTTCCTGTGGGATCGCTCAGGCTTTGTCGGCAGCTTTCCCCCAGCGCAAGGTCAGCTAC TCAACGACGCCTTCTCAGAGATCATTAAGCAACTTGAGAACCAAGTATCACTGGGTCACCTCGATGCGCGTCAGCAACGC AGCATAACCTTACAGCACGCTGGCTTTACCTGTGAGGCCGATACACTCGGTAGTCACGGATATCTCTATATTGCGATCTA TCCAACCACAGCTAACCATTAA
Upstream 100 bases:
>100_bases GTTAAACATCTGCCATCACCACTTATCTGTTGTTCTATAGCGTTACCTTACATCAACCAGCAACACATAAACTCAAGCAA GTATTAAAAGGAGTTTCAGC
Downstream 100 bases:
>100_bases GGCAATCAACGCTACGCTGACAACAGCCCCCCCCCCCTCAAGACTCATCATCGCACGCTAACTTTAGCGGAAACATTCAA CACTGCTAGCCCTTTAGCGA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 113; Mature: 112
Protein sequence:
>113_residues MTTIQPSMPYQWGLQRNITPRFGARLILQGSRLDFLWDRSGFVGSFPPAQGQLLNDAFSEIIKQLENQVSLGHLDARQQR SITLQHAGFTCEADTLGSHGYLYIAIYPTTANH
Sequences:
>Translated_113_residues MTTIQPSMPYQWGLQRNITPRFGARLILQGSRLDFLWDRSGFVGSFPPAQGQLLNDAFSEIIKQLENQVSLGHLDARQQR SITLQHAGFTCEADTLGSHGYLYIAIYPTTANH >Mature_112_residues TTIQPSMPYQWGLQRNITPRFGARLILQGSRLDFLWDRSGFVGSFPPAQGQLLNDAFSEIIKQLENQVSLGHLDARQQRS ITLQHAGFTCEADTLGSHGYLYIAIYPTTANH
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: To E.coli yafW, yagB and yeeU [H]
Homologues:
Organism=Escherichia coli, GI1788998, Length=98, Percent_Identity=52.0408163265306, Blast_Score=114, Evalue=2e-27, Organism=Escherichia coli, GI1786440, Length=97, Percent_Identity=48.4536082474227, Blast_Score=100, Evalue=3e-23, Organism=Escherichia coli, GI1788314, Length=98, Percent_Identity=47.9591836734694, Blast_Score=99, Evalue=6e-23,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR009320 [H]
Pfam domain/function: PF06154 YagB_YeeU_YfjZ [H]
EC number: NA
Molecular weight: Translated: 12693; Mature: 12561
Theoretical pI: Translated: 7.67; Mature: 7.67
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTIQPSMPYQWGLQRNITPRFGARLILQGSRLDFLWDRSGFVGSFPPAQGQLLNDAFSE CCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEECCCCCCCCCCCCCCHHHHHHHHH IIKQLENQVSLGHLDARQQRSITLQHAGFTCEADTLGSHGYLYIAIYPTTANH HHHHHHHHCCCCCCCCCCCCEEEEECCCEEEECCCCCCCCEEEEEEEECCCCC >Mature Secondary Structure TTIQPSMPYQWGLQRNITPRFGARLILQGSRLDFLWDRSGFVGSFPPAQGQLLNDAFSE CCCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEECCCCCCCCCCCCCCHHHHHHHHH IIKQLENQVSLGHLDARQQRSITLQHAGFTCEADTLGSHGYLYIAIYPTTANH HHHHHHHHCCCCCCCCCCCCEEEEECCCEEEECCCCCCCCEEEEEEEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9205837; 9278503 [H]