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The map label for this gene is yggS [C]

Identifier: 157960955

GI number: 157960955

Start: 1364663

End: 1365364

Strand: Reverse

Name: yggS [C]

Synonym: Spea_1127

Alternate gene names: 157960955

Gene position: 1365364-1364663 (Counterclockwise)

Preceding gene: 157960959

Following gene: 157960954

Centisome position: 26.39

GC content: 49.72

Gene sequence:

>702_bases
ATGACAACAATAACAGACAGACTCGCAATCGCCCAGAGCCGGATTGCACAAGCGGCGCAAAATTCTTCTCGCCGAGCAGA
AGATGTACAACTCCTTGCCGTGAGCAAAACAAAACCCAATAACCAGATCATTGAAGCCTATCATGCGGGTCAGCGTCGCT
TCGGCGAAAACTATGTGCAAGAGGGCGAATCTAAGGTCAATGCACTTAGCGAAGACTACCCAGATATTGAGTGGCACTTT
ATCGGGCCACTACAATCAAACAAAACCAAAGTGGTTGCGACACTGTTTGACTGGATGCATACAGTCGAGCGTGAAAAAAT
CGCCCAACGGCTGAATGAGCAGCGCCCGGACTCGATGCCGCCGATCAATGTGTGTATTCAAGTCAACATCAGCCAAGAAG
CGAGTAAGTCTGGCGTCGCGGCCAATGAAATATTGGCTCTCGCAGACAAGATTGCCCAGATGCCTAATCTGACTCTTCGC
GGCTTGATGGCTATTCCATCGGCCGATGTCGATGAACAAACGGCCACAGATGAAATGGCAGCCTTGCAGGCACTGTATAA
CCAATTGGCTCAACGCTTTGATTATGTCGATACCCTGTCTGTTGGCATGAGTAATGACCTAGAGCTTGCCGTTGCCCATG
GATCAACCATGGTGCGTATTGGTAGCGCTATCTTTGGCGAGCGTGATTACAGCAAGGCATAA

Upstream 100 bases:

>100_bases
GCTGAAAGGTGTAGATCTGATGCATTGTGTTTTACACTAAAGGCAAGTAACTCTGTGATTTCCATAGTTTGGGATATCCA
TTCAACCAAAAACTTACAAC

Downstream 100 bases:

>100_bases
GCAACAACTGGCGGATTGAGTATCAATATGAAAATTGTTTAATAACATAAAACTTATATTGCTCTTACTCGGCCAGATAT
TAATGAGTAAAATAGCGCTT

Product: alanine racemase domain-containing protein

Products: NA

Alternate protein names: ORF1 [H]

Number of amino acids: Translated: 233; Mature: 232

Protein sequence:

>233_residues
MTTITDRLAIAQSRIAQAAQNSSRRAEDVQLLAVSKTKPNNQIIEAYHAGQRRFGENYVQEGESKVNALSEDYPDIEWHF
IGPLQSNKTKVVATLFDWMHTVEREKIAQRLNEQRPDSMPPINVCIQVNISQEASKSGVAANEILALADKIAQMPNLTLR
GLMAIPSADVDEQTATDEMAALQALYNQLAQRFDYVDTLSVGMSNDLELAVAHGSTMVRIGSAIFGERDYSKA

Sequences:

>Translated_233_residues
MTTITDRLAIAQSRIAQAAQNSSRRAEDVQLLAVSKTKPNNQIIEAYHAGQRRFGENYVQEGESKVNALSEDYPDIEWHF
IGPLQSNKTKVVATLFDWMHTVEREKIAQRLNEQRPDSMPPINVCIQVNISQEASKSGVAANEILALADKIAQMPNLTLR
GLMAIPSADVDEQTATDEMAALQALYNQLAQRFDYVDTLSVGMSNDLELAVAHGSTMVRIGSAIFGERDYSKA
>Mature_232_residues
TTITDRLAIAQSRIAQAAQNSSRRAEDVQLLAVSKTKPNNQIIEAYHAGQRRFGENYVQEGESKVNALSEDYPDIEWHFI
GPLQSNKTKVVATLFDWMHTVEREKIAQRLNEQRPDSMPPINVCIQVNISQEASKSGVAANEILALADKIAQMPNLTLRG
LMAIPSADVDEQTATDEMAALQALYNQLAQRFDYVDTLSVGMSNDLELAVAHGSTMVRIGSAIFGERDYSKA

Specific function: Unknown

COG id: COG0325

COG function: function code R; Predicted enzyme with a TIM-barrel fold

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0001 family [H]

Homologues:

Organism=Homo sapiens, GI6005842, Length=237, Percent_Identity=43.8818565400844, Blast_Score=150, Evalue=7e-37,
Organism=Escherichia coli, GI1789321, Length=233, Percent_Identity=52.3605150214592, Blast_Score=246, Evalue=9e-67,
Organism=Caenorhabditis elegans, GI17533025, Length=225, Percent_Identity=38.2222222222222, Blast_Score=127, Evalue=5e-30,
Organism=Saccharomyces cerevisiae, GI6319435, Length=228, Percent_Identity=36.4035087719298, Blast_Score=117, Evalue=2e-27,
Organism=Drosophila melanogaster, GI45550861, Length=223, Percent_Identity=38.5650224215247, Blast_Score=138, Evalue=4e-33,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001608
- InterPro:   IPR011078 [H]

Pfam domain/function: PF01168 Ala_racemase_N [H]

EC number: NA

Molecular weight: Translated: 25766; Mature: 25635

Theoretical pI: Translated: 4.82; Mature: 4.82

Prosite motif: PS01211 UPF0001

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTITDRLAIAQSRIAQAAQNSSRRAEDVQLLAVSKTKPNNQIIEAYHAGQRRFGENYVQ
CCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHH
EGESKVNALSEDYPDIEWHFIGPLQSNKTKVVATLFDWMHTVEREKIAQRLNEQRPDSMP
HHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
PINVCIQVNISQEASKSGVAANEILALADKIAQMPNLTLRGLMAIPSADVDEQTATDEMA
CEEEEEEEECCHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHEECCCCCCCCHHHHHHHH
ALQALYNQLAQRFDYVDTLSVGMSNDLELAVAHGSTMVRIGSAIFGERDYSKA
HHHHHHHHHHHHHCHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
TTITDRLAIAQSRIAQAAQNSSRRAEDVQLLAVSKTKPNNQIIEAYHAGQRRFGENYVQ
CCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHH
EGESKVNALSEDYPDIEWHFIGPLQSNKTKVVATLFDWMHTVEREKIAQRLNEQRPDSMP
HHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
PINVCIQVNISQEASKSGVAANEILALADKIAQMPNLTLRGLMAIPSADVDEQTATDEMA
CEEEEEEEECCHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHEECCCCCCCCHHHHHHHH
ALQALYNQLAQRFDYVDTLSVGMSNDLELAVAHGSTMVRIGSAIFGERDYSKA
HHHHHHHHHHHHHCHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8982386 [H]