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The map label for this gene is yqgF [C]

Identifier: 157960959

GI number: 157960959

Start: 1368868

End: 1369293

Strand: Reverse

Name: yqgF [C]

Synonym: Spea_1131

Alternate gene names: 157960959

Gene position: 1369293-1368868 (Counterclockwise)

Preceding gene: 157960960

Following gene: 157960955

Centisome position: 26.46

GC content: 48.59

Gene sequence:

>426_bases
ATGGGCGATAAAAGCGTCTTAGGCTTTGATTACGGCACAAAGAGTATCGGTATTGCTATAGGGCAAGAACTCACCGCAAG
CGCTAGACCACTATTGTCGATAAAGGCTGTAGACGGGATCCCTAGATGGGAAGAGATTGGCGCACTCATTACCGAATGGA
AACCCGATCTTGTAGTCGTTGGCCTACCACTCAATATGGATGGCACCGAGCAAGAGATGACCCAAAGAGCACGCAAGTTT
GCCAATCGCATAAGTGGTCGCTTCGGCGTAAAAGTCGAGACTCAAGACGAACGTCTCACCACTGCAGACGCTAAAGCTAG
GCTGTTTGAGATGGGAGGATACAAGGCCCTGACTAAGGGGCAAGTTGATGCCATGTCTGCTGTACTGATTGTTGAAAGTT
ACTTTGAAAATCAGTACGGGGACTAA

Upstream 100 bases:

>100_bases
TGGCGACTGAGTCTCTGGGTTTTGATATCTGGCAGCTGTCTCAACATGCTGGTCACGCATAAATACCGCCTTTTAACGGC
ATAAAACAGGAAAGACAAAG

Downstream 100 bases:

>100_bases
AAAGGCAGGCTTAGCCTCAATGCAGGCAAGTTAAGACCAAACCTGATTCACCAACAAAAATCAAAGAACCCAGCACAAGC
TGGGTTCTTTGCTTTAAAAG

Product: Holliday junction resolvase-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 141; Mature: 140

Protein sequence:

>141_residues
MGDKSVLGFDYGTKSIGIAIGQELTASARPLLSIKAVDGIPRWEEIGALITEWKPDLVVVGLPLNMDGTEQEMTQRARKF
ANRISGRFGVKVETQDERLTTADAKARLFEMGGYKALTKGQVDAMSAVLIVESYFENQYGD

Sequences:

>Translated_141_residues
MGDKSVLGFDYGTKSIGIAIGQELTASARPLLSIKAVDGIPRWEEIGALITEWKPDLVVVGLPLNMDGTEQEMTQRARKF
ANRISGRFGVKVETQDERLTTADAKARLFEMGGYKALTKGQVDAMSAVLIVESYFENQYGD
>Mature_140_residues
GDKSVLGFDYGTKSIGIAIGQELTASARPLLSIKAVDGIPRWEEIGALITEWKPDLVVVGLPLNMDGTEQEMTQRARKFA
NRISGRFGVKVETQDERLTTADAKARLFEMGGYKALTKGQVDAMSAVLIVESYFENQYGD

Specific function: Could be a nuclease that resolves Holliday junction intermediates in genetic recombination [H]

COG id: COG0816

COG function: function code L; Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis)

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yqgF HJR family [H]

Homologues:

Organism=Escherichia coli, GI1789318, Length=135, Percent_Identity=63.7037037037037, Blast_Score=188, Evalue=1e-49,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR012337 [H]

Pfam domain/function: PF03652 UPF0081 [H]

EC number: NA

Molecular weight: Translated: 15461; Mature: 15330

Theoretical pI: Translated: 4.78; Mature: 4.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGDKSVLGFDYGTKSIGIAIGQELTASARPLLSIKAVDGIPRWEEIGALITEWKPDLVVV
CCCCCEEEECCCCCEEEEEECCHHCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCCEEEE
GLPLNMDGTEQEMTQRARKFANRISGRFGVKVETQDERLTTADAKARLFEMGGYKALTKG
EECCCCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCEEEHHHHHHHHHHCCCCEEECCC
QVDAMSAVLIVESYFENQYGD
CHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
GDKSVLGFDYGTKSIGIAIGQELTASARPLLSIKAVDGIPRWEEIGALITEWKPDLVVV
CCCCEEEECCCCCEEEEEECCHHCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCCEEEE
GLPLNMDGTEQEMTQRARKFANRISGRFGVKVETQDERLTTADAKARLFEMGGYKALTKG
EECCCCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCEEEHHHHHHHHHHCCCCEEECCC
QVDAMSAVLIVESYFENQYGD
CHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12368813 [H]