| Definition | Shewanella pealeana ATCC 700345 chromosome, complete genome. |
|---|---|
| Accession | NC_009901 |
| Length | 5,174,581 |
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The map label for this gene is tal [H]
Identifier: 157960902
GI number: 157960902
Start: 1298619
End: 1299575
Strand: Reverse
Name: tal [H]
Synonym: Spea_1074
Alternate gene names: 157960902
Gene position: 1299575-1298619 (Counterclockwise)
Preceding gene: 157960903
Following gene: 157960901
Centisome position: 25.11
GC content: 44.2
Gene sequence:
>957_bases ATGGCCAACACATTAGAACAACTTAAAGCTTTCACAACAATTGTTGCCGATACAGGTGATATTGAAGCCATAAAACGTTA CCAGCCAGAAGACGCCACGACCAACCCCTCTCTTATTTTAAAAGCATCTGAAATTCCTGAATACAGCGCACTTATTGAAA ACGCCATCGACTGGGCCAAAAGCCAGAGTGATGTTCTAGCGCAACAGATTGAAGATGCCGGTGATAAACTTGCCGTCAAT ATTGGTCTTGAGATCTTAAAAATTGTTCCAGGTCGTATTTCTACAGAAGTTGATGCCCGCCTTTCATTCGATAAAGAAGG CTCAATCGCTAAAGCACACAAGCTTATCAAGCTTTACCAAGAAGCTGGTATCGACAAGTCTCGTATCCTTATTAAGCTAG CGTCAACTTGGGAAGGAATTTGCGCCGCTAAGCAACTTGAGCAAGAAGGTATTAACTGTAACTTAACCTTGCTATTTAGT TTTGCTCAGGCTCGTGCATGTGCAGAAGCCGGGGTTTACCTAATCTCTCCTTTCGTTGGTCGTATCCTTGACTGGTACAA GAAAGACACGGGTCTTGAATACAGCGCCACGGACGATCCAGGTGTAGTATCAGTAACAAGTATCTATGACTACTACAAAC GTCATGGTTTTAATACTGTAGTTATGGGCGCAAGTTTCAGAAACACAGGCGAGATTATTGAACTTGCCGGCTGTGACAGA CTAACCATTGGCCCTGCACTACTAGAAGAGCTACAAAATAGCACCACGCCTATCGTACAAAAGCTTCTTCCAGCAACCGA AGTAGTTGCTCCAGAAGCTGAAATGACTGAAGCCCAGTTCCGTTGGGAGTTCAACGAAGACCCTATGGCAGTAGAGAAGC TAGCCGAAGGTATTCGCAACTTCGCTATCGACCAGGGTAAGCTCGAAGTTATGCTAAAAGAAAAGCTTTCGTCTTAA
Upstream 100 bases:
>100_bases TTTTTCATATATGGTTGGAATGTTCATTAAAATGGCTTTTAATAGCTGCTAAATTTATTGTCCAATCGATGCTGCTCATA GAGTAAAGGATGTAAAACCC
Downstream 100 bases:
>100_bases CGGAATAGGACAAGACTATGACAGAACTCACTCAACAAGCTAGCTGGCAAGCACTTGAGAAGCACAGTAAATCGCTTCCT CATATGCGCGAACTCTTTTC
Product: transaldolase B
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 318; Mature: 317
Protein sequence:
>318_residues MANTLEQLKAFTTIVADTGDIEAIKRYQPEDATTNPSLILKASEIPEYSALIENAIDWAKSQSDVLAQQIEDAGDKLAVN IGLEILKIVPGRISTEVDARLSFDKEGSIAKAHKLIKLYQEAGIDKSRILIKLASTWEGICAAKQLEQEGINCNLTLLFS FAQARACAEAGVYLISPFVGRILDWYKKDTGLEYSATDDPGVVSVTSIYDYYKRHGFNTVVMGASFRNTGEIIELAGCDR LTIGPALLEELQNSTTPIVQKLLPATEVVAPEAEMTEAQFRWEFNEDPMAVEKLAEGIRNFAIDQGKLEVMLKEKLSS
Sequences:
>Translated_318_residues MANTLEQLKAFTTIVADTGDIEAIKRYQPEDATTNPSLILKASEIPEYSALIENAIDWAKSQSDVLAQQIEDAGDKLAVN IGLEILKIVPGRISTEVDARLSFDKEGSIAKAHKLIKLYQEAGIDKSRILIKLASTWEGICAAKQLEQEGINCNLTLLFS FAQARACAEAGVYLISPFVGRILDWYKKDTGLEYSATDDPGVVSVTSIYDYYKRHGFNTVVMGASFRNTGEIIELAGCDR LTIGPALLEELQNSTTPIVQKLLPATEVVAPEAEMTEAQFRWEFNEDPMAVEKLAEGIRNFAIDQGKLEVMLKEKLSS >Mature_317_residues ANTLEQLKAFTTIVADTGDIEAIKRYQPEDATTNPSLILKASEIPEYSALIENAIDWAKSQSDVLAQQIEDAGDKLAVNI GLEILKIVPGRISTEVDARLSFDKEGSIAKAHKLIKLYQEAGIDKSRILIKLASTWEGICAAKQLEQEGINCNLTLLFSF AQARACAEAGVYLISPFVGRILDWYKKDTGLEYSATDDPGVVSVTSIYDYYKRHGFNTVVMGASFRNTGEIIELAGCDRL TIGPALLEELQNSTTPIVQKLLPATEVVAPEAEMTEAQFRWEFNEDPMAVEKLAEGIRNFAIDQGKLEVMLKEKLSS
Specific function: Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway [H]
COG id: COG0176
COG function: function code G; Transaldolase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the transaldolase family. Type 1 subfamily [H]
Homologues:
Organism=Homo sapiens, GI5803187, Length=324, Percent_Identity=59.2592592592593, Blast_Score=370, Evalue=1e-103, Organism=Escherichia coli, GI1786189, Length=317, Percent_Identity=70.6624605678233, Blast_Score=452, Evalue=1e-128, Organism=Escherichia coli, GI1788807, Length=315, Percent_Identity=64.4444444444444, Blast_Score=424, Evalue=1e-120, Organism=Caenorhabditis elegans, GI25153750, Length=318, Percent_Identity=56.6037735849057, Blast_Score=349, Evalue=1e-96, Organism=Caenorhabditis elegans, GI25153752, Length=165, Percent_Identity=55.7575757575758, Blast_Score=182, Evalue=3e-46, Organism=Caenorhabditis elegans, GI17570473, Length=97, Percent_Identity=50.5154639175258, Blast_Score=91, Evalue=7e-19, Organism=Saccharomyces cerevisiae, GI6321480, Length=320, Percent_Identity=54.0625, Blast_Score=339, Evalue=3e-94, Organism=Saccharomyces cerevisiae, GI6323386, Length=322, Percent_Identity=55.9006211180124, Blast_Score=338, Evalue=6e-94, Organism=Drosophila melanogaster, GI45549185, Length=318, Percent_Identity=59.4339622641509, Blast_Score=374, Evalue=1e-104,
Paralogues:
None
Copy number: 380 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 900 Molecules/Cell In: Stationary-Phase, Rich-Media (Based on E. coli). 100 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). 60 Molecules/Cell In: Stationary Phase,
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013785 - InterPro: IPR001585 - InterPro: IPR004730 - InterPro: IPR018225 [H]
Pfam domain/function: PF00923 Transaldolase [H]
EC number: =2.2.1.2 [H]
Molecular weight: Translated: 35012; Mature: 34881
Theoretical pI: Translated: 4.42; Mature: 4.42
Prosite motif: PS01054 TRANSALDOLASE_1 ; PS00958 TRANSALDOLASE_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MANTLEQLKAFTTIVADTGDIEAIKRYQPEDATTNPSLILKASEIPEYSALIENAIDWAK CCCHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHC SQSDVLAQQIEDAGDKLAVNIGLEILKIVPGRISTEVDARLSFDKEGSIAKAHKLIKLYQ CHHHHHHHHHHCCCCEEEEECCHHHHHHCCCCCCCCHHCEECCCCCCCHHHHHHHHHHHH EAGIDKSRILIKLASTWEGICAAKQLEQEGINCNLTLLFSFAQARACAEAGVYLISPFVG HHCCCHHHEEEEEHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHCCHHHHHHHHH RILDWYKKDTGLEYSATDDPGVVSVTSIYDYYKRHGFNTVVMGASFRNTGEIIELAGCDR HHHHHHHHCCCCEECCCCCCCCEEHHHHHHHHHHCCCCEEEEECCCCCCCCEEEECCCCC LTIGPALLEELQNSTTPIVQKLLPATEVVAPEAEMTEAQFRWEFNEDPMAVEKLAEGIRN EEECHHHHHHHHCCCHHHHHHHCCHHHHCCCCHHHCHHHEEEECCCCCHHHHHHHHHHHH FAIDQGKLEVMLKEKLSS HCCCCCHHHHHHHHHHCC >Mature Secondary Structure ANTLEQLKAFTTIVADTGDIEAIKRYQPEDATTNPSLILKASEIPEYSALIENAIDWAK CCHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHC SQSDVLAQQIEDAGDKLAVNIGLEILKIVPGRISTEVDARLSFDKEGSIAKAHKLIKLYQ CHHHHHHHHHHCCCCEEEEECCHHHHHHCCCCCCCCHHCEECCCCCCCHHHHHHHHHHHH EAGIDKSRILIKLASTWEGICAAKQLEQEGINCNLTLLFSFAQARACAEAGVYLISPFVG HHCCCHHHEEEEEHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHCCHHHHHHHHH RILDWYKKDTGLEYSATDDPGVVSVTSIYDYYKRHGFNTVVMGASFRNTGEIIELAGCDR HHHHHHHHCCCCEECCCCCCCCEEHHHHHHHHHHCCCCEEEEECCCCCCCCEEEECCCCC LTIGPALLEELQNSTTPIVQKLLPATEVVAPEAEMTEAQFRWEFNEDPMAVEKLAEGIRN EEECHHHHHHHHCCCHHHHHHHCCHHHHCCCCHHHCHHHEEEECCCCCHHHHHHHHHHHH FAIDQGKLEVMLKEKLSS HCCCCCHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA