| Definition | Shewanella pealeana ATCC 700345 chromosome, complete genome. |
|---|---|
| Accession | NC_009901 |
| Length | 5,174,581 |
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The map label for this gene is aceE [H]
Identifier: 157960248
GI number: 157960248
Start: 512019
End: 514679
Strand: Direct
Name: aceE [H]
Synonym: Spea_0419
Alternate gene names: 157960248
Gene position: 512019-514679 (Clockwise)
Preceding gene: 157960247
Following gene: 157960249
Centisome position: 9.89
GC content: 44.87
Gene sequence:
>2661_bases ATGTCTGAACATATGCTAAATGACATCGATCCACTAGAAACTAATGAGTGGTTGTCTGCTCTAGAATCAGTTGTACGCGA AGAAGGCGTTGAGCGCGCTCAATACCTACTTGAGCAAGTACTTGATAAGGCTCGTCTAGACGGTGTCGATATGGCAACGG GGATTACGACCAACTATATCAACACCATTCCTACGAGCCAAGAGCCAGCATATCCTGGTAATACAACTATTGAGCGCCGT ATTCGTTCAATTATTCGTTGGAACGCAATCATGATCGTCCTACGTGCATCTAAGAAAGACTTAGATCTCGGTGGTCATAT GGCGTCTTACCAATCTGCTGCATCATTTTATGAAATGTGTTTTAACCATTTCTTCCGTGCACCAAACGAAGTAGATGGTG GTGATTTAGTTTACTATCAGGGTCATATATCTCCAGGTATCTACTCGCGCGCATTTCTTGAAGGTCGTTTAACTGCCGAT CAGTTAGATAACTTCCGTCAAGAAGTTGATGGTAAAGGTATTCCTTCATACCCACATCCAAAGTTAATGCCTGAGTTCTG GCAGTTCCCGACTGTATCTATGGGTCTAGGCCCAATGTCTGCTATTTACCAAGCCCGTTTCCTTAAGTACCTAGATGGCC GTGGTCTAAAAGATACCTCTGCACAGCGAGTATACGCCTTCTTAGGTGACGGTGAGATGGATGAGCCAGAATCTCGCGGT GCTATCTCTTTCGCATCACGTGAAAAGCTAGATAACCTATGTTTCTTGATTAACTGTAACCTACAGCGTCTTGATGGCCC AGTTATGGGTAACGGTAAGATCATTCAAGAGCTTGAAGGTCTATTTAGAGGCGCTGGCTGGAACGTAGTTAAAGTGATCT GGGGCAATAACTGGGATGCACTGATTGCCAAAGATACTACTGGTAAGCTGCTACAGCTTATGAACGAAACCATTGACGGT GACTACCAGACATTTAAGTCCAAAGATGGCGCTTATGTACGTGAGCACTTCTTTGGTAAGTACCCAGAAACAGCTGCACT TGTATCTGATATGACAGATGCAGAGATCTTCGCGCTTAAGCGCGGTGGTCATGAGCCTTCTAAATTGTTTGCAGCATTTA AAAATGCGCAAGAAACTAAAGGCAAGCCAACAGTTATCTTAGCTAAAACTGTAAAAGGTTATGGCATGGGCGATGCTGCT GAAGGCAAGAACATCGCTCACGGCGTGAAGAAGATGGATATGACCCATGTACTTCAGTTGCGTAACCGTCTTGGTCTTGG CGACTTGCTTAGCGATGAAAAAGTGTCAGAGTTGCCTTACCTAACGCTTGAAGAAGGTTCTGAAGAGTACAAGTATTTGC ACGCTCGTCGTGATGCGCTACATGGTTATACACCACAGCGTCTACCTAACTTTACTCAGCCACTTGAACTACCAGTTGTT GAAGAGTTCAGTTCTTTGCTTGTTGAGCAAAAGCGTGAAATCTCAACCACTATGGCATTTGTTCGTACCCTGAACATCCT GCTTAAGAACAAAGGCATTGGTAAGAACATCGTTCCTATTATTGCTGACGAAGCACGTACTTTCGGTATGGAAGGTCTGT TCCGTCAAATTGGTATTTACAACCCGCATGGTCAGGAATACACGCCTGAAGATCGCAGTGTTGTGTCGTACTATAAAGAA GCGACTTCTGGTCAAGTATTGCAGGAAGGTATCAACGAGTTAGGTGCTATGTCTTCATGGGTTGCTGCGGCAACGTCATA CAGCACTAACGATCTACCTATGATCCCGTTCTACATCTACTACTCTATGTTTGGTTTCCAACGTGTTGGCGACATGGCAT GGATGGCGGGTGATCAGCAAGCACGTGGTTTCCTATTAGGTGCTACTGCTGGTCGTACAACGCTAAACGGTGAAGGTCTG CAGCACGAAGATGGCCACAGCCATGTTCAAGCTAACACGATTCCAAACTGTATCTCTTACGACCCAACATTCGCGTACGA GCTAGCGGTTATCATGCAAGACGGTATCCGTCGTATGTATGGCGAGCAAGAGAACGTGTTCTATTACTTGACGCTAATGA ATGAAAACTACGCAATGCCTGCAATGCCAGAAGGCAGCGAAGAAGGTATCCGTAAGGGTATTTATAAGCTTGAGTCGTAC AAAGGTAGCAACAAGGTTCAGTTAATGAGCTCTGGTACTATCATGAACGAAGTGCGTAAAGCTGCGCAAATTCTAAGTGA AGAGTACGACGTTGCATCAGATGTTTACTCTGTGACTTCATTCAACGAGCTAACTCGTGAAGGTCAAGATGTTGAGCGTT TCAACATGCTGCACCCAGAAGCAGAGCAAAAGACTGCGTACATTACTCAAGTAATGGGCACTGAACCTGCAATTGCTGCA ACCGATTACATGAAGAACTATGCTGAACAAGTTCGTGCATTTATGCCTTCTGAATCATTCAAAGTGCTAGGTACAGACGG TTTTGGTCGTTCAGACAGCCGTGAAAATCTACGTCGTCACTTTGAAGTAAATGCTGGTTACGTTGTAGTAGCTGCACTAA ACGAACTCGCAAAACGTGGCGATATTGAAAAGTCAGTGGTTGCAGCAGCAATTACTAAATTCAACATCGACGCTGACAAG ACAAACCCGCTATACGCGTAA
Upstream 100 bases:
>100_bases TTAAACGAGTTACCCCTGTTGCCAAACAATATTTCAAAATTTAAATACACTAATCACTGCAGTAGTGACTTAGGTATTAC GTATAGGAAAGGACTGCAAC
Downstream 100 bases:
>100_bases GAGGCAATACAAAATGACAATCGAAATTAATGTACCAGATATCGGTGCGGATGAGGTTGAAGTAACAGAGATCCTTGTTA GCGTAGGCGACAAGGTTGAA
Product: pyruvate dehydrogenase subunit E1
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 886; Mature: 885
Protein sequence:
>886_residues MSEHMLNDIDPLETNEWLSALESVVREEGVERAQYLLEQVLDKARLDGVDMATGITTNYINTIPTSQEPAYPGNTTIERR IRSIIRWNAIMIVLRASKKDLDLGGHMASYQSAASFYEMCFNHFFRAPNEVDGGDLVYYQGHISPGIYSRAFLEGRLTAD QLDNFRQEVDGKGIPSYPHPKLMPEFWQFPTVSMGLGPMSAIYQARFLKYLDGRGLKDTSAQRVYAFLGDGEMDEPESRG AISFASREKLDNLCFLINCNLQRLDGPVMGNGKIIQELEGLFRGAGWNVVKVIWGNNWDALIAKDTTGKLLQLMNETIDG DYQTFKSKDGAYVREHFFGKYPETAALVSDMTDAEIFALKRGGHEPSKLFAAFKNAQETKGKPTVILAKTVKGYGMGDAA EGKNIAHGVKKMDMTHVLQLRNRLGLGDLLSDEKVSELPYLTLEEGSEEYKYLHARRDALHGYTPQRLPNFTQPLELPVV EEFSSLLVEQKREISTTMAFVRTLNILLKNKGIGKNIVPIIADEARTFGMEGLFRQIGIYNPHGQEYTPEDRSVVSYYKE ATSGQVLQEGINELGAMSSWVAAATSYSTNDLPMIPFYIYYSMFGFQRVGDMAWMAGDQQARGFLLGATAGRTTLNGEGL QHEDGHSHVQANTIPNCISYDPTFAYELAVIMQDGIRRMYGEQENVFYYLTLMNENYAMPAMPEGSEEGIRKGIYKLESY KGSNKVQLMSSGTIMNEVRKAAQILSEEYDVASDVYSVTSFNELTREGQDVERFNMLHPEAEQKTAYITQVMGTEPAIAA TDYMKNYAEQVRAFMPSESFKVLGTDGFGRSDSRENLRRHFEVNAGYVVVAALNELAKRGDIEKSVVAAAITKFNIDADK TNPLYA
Sequences:
>Translated_886_residues MSEHMLNDIDPLETNEWLSALESVVREEGVERAQYLLEQVLDKARLDGVDMATGITTNYINTIPTSQEPAYPGNTTIERR IRSIIRWNAIMIVLRASKKDLDLGGHMASYQSAASFYEMCFNHFFRAPNEVDGGDLVYYQGHISPGIYSRAFLEGRLTAD QLDNFRQEVDGKGIPSYPHPKLMPEFWQFPTVSMGLGPMSAIYQARFLKYLDGRGLKDTSAQRVYAFLGDGEMDEPESRG AISFASREKLDNLCFLINCNLQRLDGPVMGNGKIIQELEGLFRGAGWNVVKVIWGNNWDALIAKDTTGKLLQLMNETIDG DYQTFKSKDGAYVREHFFGKYPETAALVSDMTDAEIFALKRGGHEPSKLFAAFKNAQETKGKPTVILAKTVKGYGMGDAA EGKNIAHGVKKMDMTHVLQLRNRLGLGDLLSDEKVSELPYLTLEEGSEEYKYLHARRDALHGYTPQRLPNFTQPLELPVV EEFSSLLVEQKREISTTMAFVRTLNILLKNKGIGKNIVPIIADEARTFGMEGLFRQIGIYNPHGQEYTPEDRSVVSYYKE ATSGQVLQEGINELGAMSSWVAAATSYSTNDLPMIPFYIYYSMFGFQRVGDMAWMAGDQQARGFLLGATAGRTTLNGEGL QHEDGHSHVQANTIPNCISYDPTFAYELAVIMQDGIRRMYGEQENVFYYLTLMNENYAMPAMPEGSEEGIRKGIYKLESY KGSNKVQLMSSGTIMNEVRKAAQILSEEYDVASDVYSVTSFNELTREGQDVERFNMLHPEAEQKTAYITQVMGTEPAIAA TDYMKNYAEQVRAFMPSESFKVLGTDGFGRSDSRENLRRHFEVNAGYVVVAALNELAKRGDIEKSVVAAAITKFNIDADK TNPLYA >Mature_885_residues SEHMLNDIDPLETNEWLSALESVVREEGVERAQYLLEQVLDKARLDGVDMATGITTNYINTIPTSQEPAYPGNTTIERRI RSIIRWNAIMIVLRASKKDLDLGGHMASYQSAASFYEMCFNHFFRAPNEVDGGDLVYYQGHISPGIYSRAFLEGRLTADQ LDNFRQEVDGKGIPSYPHPKLMPEFWQFPTVSMGLGPMSAIYQARFLKYLDGRGLKDTSAQRVYAFLGDGEMDEPESRGA ISFASREKLDNLCFLINCNLQRLDGPVMGNGKIIQELEGLFRGAGWNVVKVIWGNNWDALIAKDTTGKLLQLMNETIDGD YQTFKSKDGAYVREHFFGKYPETAALVSDMTDAEIFALKRGGHEPSKLFAAFKNAQETKGKPTVILAKTVKGYGMGDAAE GKNIAHGVKKMDMTHVLQLRNRLGLGDLLSDEKVSELPYLTLEEGSEEYKYLHARRDALHGYTPQRLPNFTQPLELPVVE EFSSLLVEQKREISTTMAFVRTLNILLKNKGIGKNIVPIIADEARTFGMEGLFRQIGIYNPHGQEYTPEDRSVVSYYKEA TSGQVLQEGINELGAMSSWVAAATSYSTNDLPMIPFYIYYSMFGFQRVGDMAWMAGDQQARGFLLGATAGRTTLNGEGLQ HEDGHSHVQANTIPNCISYDPTFAYELAVIMQDGIRRMYGEQENVFYYLTLMNENYAMPAMPEGSEEGIRKGIYKLESYK GSNKVQLMSSGTIMNEVRKAAQILSEEYDVASDVYSVTSFNELTREGQDVERFNMLHPEAEQKTAYITQVMGTEPAIAAT DYMKNYAEQVRAFMPSESFKVLGTDGFGRSDSRENLRRHFEVNAGYVVVAALNELAKRGDIEKSVVAAAITKFNIDADKT NPLYA
Specific function: The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components:pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydroge
COG id: COG2609
COG function: function code C; Pyruvate dehydrogenase complex, dehydrogenase (E1) component
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI1786304, Length=889, Percent_Identity=73.0033745781777, Blast_Score=1390, Evalue=0.0, Organism=Caenorhabditis elegans, GI17539652, Length=228, Percent_Identity=29.3859649122807, Blast_Score=70, Evalue=6e-12,
Paralogues:
None
Copy number: 1140 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). 400 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). 6,000 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004660 - InterPro: IPR009014 - InterPro: IPR015941 - InterPro: IPR005474 [H]
Pfam domain/function: PF00456 Transketolase_N [H]
EC number: =1.2.4.1 [H]
Molecular weight: Translated: 99245; Mature: 99113
Theoretical pI: Translated: 5.00; Mature: 5.00
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 3.8 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 3.7 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSEHMLNDIDPLETNEWLSALESVVREEGVERAQYLLEQVLDKARLDGVDMATGITTNYI CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCHHHHH NTIPTSQEPAYPGNTTIERRIRSIIRWNAIMIVLRASKKDLDLGGHMASYQSAASFYEMC HCCCCCCCCCCCCCCHHHHHHHHHHHHHHEEEEEECCCCCCCCCCCHHHHHHHHHHHHHH FNHFFRAPNEVDGGDLVYYQGHISPGIYSRAFLEGRLTADQLDNFRQEVDGKGIPSYPHP HHHHHCCCCCCCCCCEEEEECCCCCCHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCC KLMPEFWQFPTVSMGLGPMSAIYQARFLKYLDGRGLKDTSAQRVYAFLGDGEMDEPESRG CCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHEEEEEECCCCCCCCCCCC AISFASREKLDNLCFLINCNLQRLDGPVMGNGKIIQELEGLFRGAGWNVVKVIWGNNWDA CEEHHHHHHHCCEEEEEECCHHHCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEECCCCCE LIAKDTTGKLLQLMNETIDGDYQTFKSKDGAYVREHFFGKYPETAALVSDMTDAEIFALK EEEECCHHHHHHHHHHHCCCCHHHHHCCCCCHHHHHHCCCCCCHHHHHHCCCCHHEEEEC RGGHEPSKLFAAFKNAQETKGKPTVILAKTVKGYGMGDAAEGKNIAHGVKKMDMTHVLQL CCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH RNRLGLGDLLSDEKVSELPYLTLEEGSEEYKYLHARRDALHGYTPQRLPNFTQPLELPVV HHHCCCCHHCCCCHHHHCCEEEECCCCHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCHHH EEFSSLLVEQKREISTTMAFVRTLNILLKNKGIGKNIVPIIADEARTFGMEGLFRQIGIY HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECHHHHHCHHHHHHHHCCC NPHGQEYTPEDRSVVSYYKEATSGQVLQEGINELGAMSSWVAAATSYSTNDLPMIPFYIY CCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHH YSMFGFQRVGDMAWMAGDQQARGFLLGATAGRTTLNGEGLQHEDGHSHVQANTIPNCISY HHHHHHHHHCCHHHHCCCHHHCCEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCC DPTFAYELAVIMQDGIRRMYGEQENVFYYLTLMNENYAMPAMPEGSEEGIRKGIYKLESY CCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHC KGSNKVQLMSSGTIMNEVRKAAQILSEEYDVASDVYSVTSFNELTREGQDVERFNMLHPE CCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCC AEQKTAYITQVMGTEPAIAATDYMKNYAEQVRAFMPSESFKVLGTDGFGRSDSRENLRRH HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCHHHHHHH FEVNAGYVVVAALNELAKRGDIEKSVVAAAITKFNIDADKTNPLYA EECCCCEEEHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCC >Mature Secondary Structure SEHMLNDIDPLETNEWLSALESVVREEGVERAQYLLEQVLDKARLDGVDMATGITTNYI CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCHHHHH NTIPTSQEPAYPGNTTIERRIRSIIRWNAIMIVLRASKKDLDLGGHMASYQSAASFYEMC HCCCCCCCCCCCCCCHHHHHHHHHHHHHHEEEEEECCCCCCCCCCCHHHHHHHHHHHHHH FNHFFRAPNEVDGGDLVYYQGHISPGIYSRAFLEGRLTADQLDNFRQEVDGKGIPSYPHP HHHHHCCCCCCCCCCEEEEECCCCCCHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCC KLMPEFWQFPTVSMGLGPMSAIYQARFLKYLDGRGLKDTSAQRVYAFLGDGEMDEPESRG CCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHEEEEEECCCCCCCCCCCC AISFASREKLDNLCFLINCNLQRLDGPVMGNGKIIQELEGLFRGAGWNVVKVIWGNNWDA CEEHHHHHHHCCEEEEEECCHHHCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEECCCCCE LIAKDTTGKLLQLMNETIDGDYQTFKSKDGAYVREHFFGKYPETAALVSDMTDAEIFALK EEEECCHHHHHHHHHHHCCCCHHHHHCCCCCHHHHHHCCCCCCHHHHHHCCCCHHEEEEC RGGHEPSKLFAAFKNAQETKGKPTVILAKTVKGYGMGDAAEGKNIAHGVKKMDMTHVLQL CCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH RNRLGLGDLLSDEKVSELPYLTLEEGSEEYKYLHARRDALHGYTPQRLPNFTQPLELPVV HHHCCCCHHCCCCHHHHCCEEEECCCCHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCHHH EEFSSLLVEQKREISTTMAFVRTLNILLKNKGIGKNIVPIIADEARTFGMEGLFRQIGIY HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECHHHHHCHHHHHHHHCCC NPHGQEYTPEDRSVVSYYKEATSGQVLQEGINELGAMSSWVAAATSYSTNDLPMIPFYIY CCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHH YSMFGFQRVGDMAWMAGDQQARGFLLGATAGRTTLNGEGLQHEDGHSHVQANTIPNCISY HHHHHHHHHCCHHHHCCCHHHCCEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCC DPTFAYELAVIMQDGIRRMYGEQENVFYYLTLMNENYAMPAMPEGSEEGIRKGIYKLESY CCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHC KGSNKVQLMSSGTIMNEVRKAAQILSEEYDVASDVYSVTSFNELTREGQDVERFNMLHPE CCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCC AEQKTAYITQVMGTEPAIAATDYMKNYAEQVRAFMPSESFKVLGTDGFGRSDSRENLRRH HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCHHHHHHH FEVNAGYVVVAALNELAKRGDIEKSVVAAAITKFNIDADKTNPLYA EECCCCEEEHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]