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The map label for this gene is rcaC [H]

Identifier: 157960164

GI number: 157960164

Start: 378094

End: 378762

Strand: Reverse

Name: rcaC [H]

Synonym: Spea_0335

Alternate gene names: 157960164

Gene position: 378762-378094 (Counterclockwise)

Preceding gene: 157960167

Following gene: 157960163

Centisome position: 7.32

GC content: 48.88

Gene sequence:

>669_bases
ATGAAAGTGCTAATTGTTGATGACAGCCATAACCTAAGTGAAACAATCGCCGACTATTTGGAACTCGAAGGCATGATTAT
CGACTGCGCCTATCACGGTGAGGCCGCGATTAATTTAGTCTCCGAAAATAGTTACGATGTCATCATTATGGATATCATGA
TGCCAAAGATTGACGGCATCACCGCAGTACGCAAGCTCCGTGAAGAGCTGTATTGCAACACGCCTATTTTATTTCTCACC
GCCAAAGACAGCCTCGACGACAAAGTCGCCGCCTTCAAGGCCGGTGGCGATGACTACCTGCTCAAGCCCTTCGCCATGGA
GGAGCTGAGTCTGCGTCTACATGCACTGAGTAATCGCGGACCAAGGCAAGATATCGGCACCTTGTCCTTTGCCGATATCA
AGATTAATACTCAGACCGATGTTGTGACACGAGGCGAGCAACCAATTAAGCTCAGCCGTATCCAGCTAAAAATATTAAAG
GTGTTGCTCAAGCGTGCGCCGAGTATTGTCAGCCGCCAAGATGTAACAGATGCAGTCTGGGGGGATGAGTCTCCTCCGAG
TGATGCCTTGCGTAGTCATATTTACGGCCTGCGAACCGCCCTTGACAAAGGCTTCGAACAATCACGATTAGAGACGATTC
ATGGACAAGGTTACCGCCTCAAAGCATAA

Upstream 100 bases:

>100_bases
TTTTCATCTAAATACCCTTATTTAGTAAGATGATTATCAAATTTAGCCGTATGTTAAAACTTGGCCCGTGAAGCGATCGT
GAAGAAAGATAAACTAATCT

Downstream 100 bases:

>100_bases
ACAGTTCCCGAGCATCTACCGCAAGCTCCGTTGGAGCTTCGGTTTGATGACCTTTGCTATGTTTAGCCTATTTTGGTCGG
TGATCTATATTGCCGAAAAC

Product: two component transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 222; Mature: 222

Protein sequence:

>222_residues
MKVLIVDDSHNLSETIADYLELEGMIIDCAYHGEAAINLVSENSYDVIIMDIMMPKIDGITAVRKLREELYCNTPILFLT
AKDSLDDKVAAFKAGGDDYLLKPFAMEELSLRLHALSNRGPRQDIGTLSFADIKINTQTDVVTRGEQPIKLSRIQLKILK
VLLKRAPSIVSRQDVTDAVWGDESPPSDALRSHIYGLRTALDKGFEQSRLETIHGQGYRLKA

Sequences:

>Translated_222_residues
MKVLIVDDSHNLSETIADYLELEGMIIDCAYHGEAAINLVSENSYDVIIMDIMMPKIDGITAVRKLREELYCNTPILFLT
AKDSLDDKVAAFKAGGDDYLLKPFAMEELSLRLHALSNRGPRQDIGTLSFADIKINTQTDVVTRGEQPIKLSRIQLKILK
VLLKRAPSIVSRQDVTDAVWGDESPPSDALRSHIYGLRTALDKGFEQSRLETIHGQGYRLKA
>Mature_222_residues
MKVLIVDDSHNLSETIADYLELEGMIIDCAYHGEAAINLVSENSYDVIIMDIMMPKIDGITAVRKLREELYCNTPILFLT
AKDSLDDKVAAFKAGGDDYLLKPFAMEELSLRLHALSNRGPRQDIGTLSFADIKINTQTDVVTRGEQPIKLSRIQLKILK
VLLKRAPSIVSRQDVTDAVWGDESPPSDALRSHIYGLRTALDKGFEQSRLETIHGQGYRLKA

Specific function: Required for chromatic adaptation. Thought to be a positive regulator of phycobiliproteins [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 3 response regulatory domains [H]

Homologues:

Organism=Escherichia coli, GI87082012, Length=230, Percent_Identity=30.8695652173913, Blast_Score=118, Evalue=3e-28,
Organism=Escherichia coli, GI1786784, Length=225, Percent_Identity=33.3333333333333, Blast_Score=115, Evalue=3e-27,
Organism=Escherichia coli, GI1789402, Length=221, Percent_Identity=29.8642533936652, Blast_Score=114, Evalue=4e-27,
Organism=Escherichia coli, GI1790552, Length=223, Percent_Identity=31.8385650224215, Blast_Score=113, Evalue=8e-27,
Organism=Escherichia coli, GI1786599, Length=222, Percent_Identity=28.8288288288288, Blast_Score=109, Evalue=2e-25,
Organism=Escherichia coli, GI1786911, Length=223, Percent_Identity=31.390134529148, Blast_Score=104, Evalue=4e-24,
Organism=Escherichia coli, GI1790860, Length=224, Percent_Identity=28.5714285714286, Blast_Score=99, Evalue=2e-22,
Organism=Escherichia coli, GI1789809, Length=226, Percent_Identity=27.8761061946903, Blast_Score=99, Evalue=3e-22,
Organism=Escherichia coli, GI1787375, Length=222, Percent_Identity=28.8288288288288, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI2367329, Length=227, Percent_Identity=31.2775330396476, Blast_Score=92, Evalue=4e-20,
Organism=Escherichia coli, GI1788394, Length=226, Percent_Identity=27.4336283185841, Blast_Score=91, Evalue=5e-20,
Organism=Escherichia coli, GI1790863, Length=233, Percent_Identity=30.0429184549356, Blast_Score=91, Evalue=6e-20,
Organism=Escherichia coli, GI1788550, Length=110, Percent_Identity=36.3636363636364, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1787229, Length=229, Percent_Identity=26.2008733624454, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI145693140, Length=230, Percent_Identity=28.695652173913, Blast_Score=62, Evalue=2e-11,
Organism=Saccharomyces cerevisiae, GI6322044, Length=115, Percent_Identity=33.0434782608696, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR008207
- InterPro:   IPR001867
- InterPro:   IPR001789
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01627 Hpt; PF00072 Response_reg; PF00486 Trans_reg_C [H]

EC number: NA

Molecular weight: Translated: 24802; Mature: 24802

Theoretical pI: Translated: 5.37; Mature: 5.37

Prosite motif: PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKVLIVDDSHNLSETIADYLELEGMIIDCAYHGEAAINLVSENSYDVIIMDIMMPKIDGI
CEEEEEECCCCHHHHHHHHHHHCCEEEEEEECCCEEEEEEECCCCCEEEEEEECCCCCHH
TAVRKLREELYCNTPILFLTAKDSLDDKVAAFKAGGDDYLLKPFAMEELSLRLHALSNRG
HHHHHHHHHHHCCCCEEEEEECCCCCCHHHEEECCCCCEEECCHHHHHHHHHHHHHCCCC
PRQDIGTLSFADIKINTQTDVVTRGEQPIKLSRIQLKILKVLLKRAPSIVSRQDVTDAVW
CCCCCCCEEEEEEEEECCCCEEECCCCCEEHHHHHHHHHHHHHHHCCCHHHHCCCCHHHC
GDESPPSDALRSHIYGLRTALDKGFEQSRLETIHGQGYRLKA
CCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCEEECC
>Mature Secondary Structure
MKVLIVDDSHNLSETIADYLELEGMIIDCAYHGEAAINLVSENSYDVIIMDIMMPKIDGI
CEEEEEECCCCHHHHHHHHHHHCCEEEEEEECCCEEEEEEECCCCCEEEEEEECCCCCHH
TAVRKLREELYCNTPILFLTAKDSLDDKVAAFKAGGDDYLLKPFAMEELSLRLHALSNRG
HHHHHHHHHHHCCCCEEEEEECCCCCCHHHEEECCCCCEEECCHHHHHHHHHHHHHCCCC
PRQDIGTLSFADIKINTQTDVVTRGEQPIKLSRIQLKILKVLLKRAPSIVSRQDVTDAVW
CCCCCCCEEEEEEEEECCCCEEECCCCCEEHHHHHHHHHHHHHHHCCCHHHHCCCCHHHC
GDESPPSDALRSHIYGLRTALDKGFEQSRLETIHGQGYRLKA
CCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1409650 [H]