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The map label for this gene is nadB [C]

Identifier: 157960154

GI number: 157960154

Start: 363521

End: 365044

Strand: Reverse

Name: nadB [C]

Synonym: Spea_0325

Alternate gene names: 157960154

Gene position: 365044-363521 (Counterclockwise)

Preceding gene: 157960157

Following gene: 157960153

Centisome position: 7.05

GC content: 49.48

Gene sequence:

>1524_bases
ATGCAAGGTAGAAGAAACTTTTTAAAGCTAAGTGCTGGCGCTGCTATTGGTAGTTTAGCGGCAACATTACCCGGTACCGT
ACAAGCTAAAAGCTGTGGCGAAATTAACTGGGACGAAAGCGCAGATGTTATCGTCGTCGGTTCAGGCTTTGCAGGTCTTT
CTGCAGCTGTAAATGCTAAGCGCCAAGGCCTGGGTTCGGTACTTGTTTTAGAAAAGATGCAAGTGATCGGTGGTAACTCA
GCAATTAACGGTGGCTGGTTAGCGATCCCTAAGAATCCTATCCAGTTGGCTCAAGGCGTGAATGACGACTCACCAGAAGA
GTTAGTCAAAGATCAGATCATCTCTGGCCGTGGCATGCAAAATGAACCAGCGCTACGTCAAATCGCTAATCGCTCTTTGG
ATGCTTACGACCTTTGTATCGATACCGGCGTTAAATTCCGTGATGGCTTCAACATCCAAGTGGGTGGTCACAACAAGGCA
CGTGCTATCCGTACCCAACATGGTACTGGCGGCGACATCACCACCAAACTATATGAAGCGGGTGTGAAAGAAGGTGTAGA
TCACCGTCTACAGCACTATATCGAAGACTTCATCATGGACGGTCAGCAGATCATCGGCGTTAAGGTTCGTAAGAACTACC
GCTTCCCAGATCTAAAAACTGGCACCACGATTTTTATTAAAGCAAATAAAGCCGTAGTACTGGCTAACGGCGGTTTCGCT
CGTAACATGGCGCTGCGTGAAGCGGTTGACCCATCTCTAGACCCAACTCTTGATTGCACCAACGCAATGGGTGCAACCGG
TGAAGTTACACTTACCGCTATGGCTTACGGCGCACTCCCTGTGCACATGAACCTTATCCAGACTGGTCACTGGGGTTCTC
CAGATGAAGGTGGATTCGGTTGGTCAAACGCATTGCTATCTATCGGCTGGCACCAAGGTGTGGCGATTAGCGTGCTAAAC
GGTAAGCGTTTTATGGATGAGCGTGCAGACCGCAAGACCTGCTCTGAAGCGATTATGAAAAACCGTAACGCCGATGGTAG
CCCGGCTTATCCAGTGGTGTTCTTCAACTATAACAACTACGCCAAAGACGACCGTGTTGTGCGTGCACTACGCGACGAGA
TGGCTTGGAAAGTTGACTCACTCGATGAGATCGCCGCTAAGTTCGATATTCCTGCCGCAGAACTCAAGCGCAGCATCAAA
GAGTACAACAAACATGTTGGCGAGCGTAAAGACCCACTATTCAACCGCAAGATGGATACAGCAGAAGAGCTAACGGGCCC
ATTTGTTGTATCACGTATTTGGCCAAAAGTGCATTACTGCATGGGCGGCCTAAAGACTGATTTAGGCGCGCGCGTAATTG
ATGGTCGCTCTATGGCACCGATCAAAAACCTATACGCCATTGGCGAAGTCACGGGTGGTATTCACGGTGAAGCACGCTTG
AGTTCGACCTCATGCCTAGAGTGCCTCGTCATGGGGATCATCGTATCTGAAACCATCAAAGCCGACCTTGAAGGAGCCGT
CTAA

Upstream 100 bases:

>100_bases
AATAAATTTGTCACTGAAAAAATGGCGTGACTTAGTTCACCTTTAGCAACTGAACTTACGTTTATCGTTACCTCATTCCC
TGATTGAGGATTACAAGAAA

Downstream 100 bases:

>100_bases
TGAACAAGTTATTACTAAGTGCACTACTCGGCCTCGCTCTGTCTAGCAACGTCATGGCGGGCGAGCTAGTCAAGATGAAA
GGTAAGACTGAAGGTCGCGT

Product: flavocytochrome c

Products: NA

Alternate protein names: Flavocytochrome c; FL cyt [H]

Number of amino acids: Translated: 507; Mature: 507

Protein sequence:

>507_residues
MQGRRNFLKLSAGAAIGSLAATLPGTVQAKSCGEINWDESADVIVVGSGFAGLSAAVNAKRQGLGSVLVLEKMQVIGGNS
AINGGWLAIPKNPIQLAQGVNDDSPEELVKDQIISGRGMQNEPALRQIANRSLDAYDLCIDTGVKFRDGFNIQVGGHNKA
RAIRTQHGTGGDITTKLYEAGVKEGVDHRLQHYIEDFIMDGQQIIGVKVRKNYRFPDLKTGTTIFIKANKAVVLANGGFA
RNMALREAVDPSLDPTLDCTNAMGATGEVTLTAMAYGALPVHMNLIQTGHWGSPDEGGFGWSNALLSIGWHQGVAISVLN
GKRFMDERADRKTCSEAIMKNRNADGSPAYPVVFFNYNNYAKDDRVVRALRDEMAWKVDSLDEIAAKFDIPAAELKRSIK
EYNKHVGERKDPLFNRKMDTAEELTGPFVVSRIWPKVHYCMGGLKTDLGARVIDGRSMAPIKNLYAIGEVTGGIHGEARL
SSTSCLECLVMGIIVSETIKADLEGAV

Sequences:

>Translated_507_residues
MQGRRNFLKLSAGAAIGSLAATLPGTVQAKSCGEINWDESADVIVVGSGFAGLSAAVNAKRQGLGSVLVLEKMQVIGGNS
AINGGWLAIPKNPIQLAQGVNDDSPEELVKDQIISGRGMQNEPALRQIANRSLDAYDLCIDTGVKFRDGFNIQVGGHNKA
RAIRTQHGTGGDITTKLYEAGVKEGVDHRLQHYIEDFIMDGQQIIGVKVRKNYRFPDLKTGTTIFIKANKAVVLANGGFA
RNMALREAVDPSLDPTLDCTNAMGATGEVTLTAMAYGALPVHMNLIQTGHWGSPDEGGFGWSNALLSIGWHQGVAISVLN
GKRFMDERADRKTCSEAIMKNRNADGSPAYPVVFFNYNNYAKDDRVVRALRDEMAWKVDSLDEIAAKFDIPAAELKRSIK
EYNKHVGERKDPLFNRKMDTAEELTGPFVVSRIWPKVHYCMGGLKTDLGARVIDGRSMAPIKNLYAIGEVTGGIHGEARL
SSTSCLECLVMGIIVSETIKADLEGAV
>Mature_507_residues
MQGRRNFLKLSAGAAIGSLAATLPGTVQAKSCGEINWDESADVIVVGSGFAGLSAAVNAKRQGLGSVLVLEKMQVIGGNS
AINGGWLAIPKNPIQLAQGVNDDSPEELVKDQIISGRGMQNEPALRQIANRSLDAYDLCIDTGVKFRDGFNIQVGGHNKA
RAIRTQHGTGGDITTKLYEAGVKEGVDHRLQHYIEDFIMDGQQIIGVKVRKNYRFPDLKTGTTIFIKANKAVVLANGGFA
RNMALREAVDPSLDPTLDCTNAMGATGEVTLTAMAYGALPVHMNLIQTGHWGSPDEGGFGWSNALLSIGWHQGVAISVLN
GKRFMDERADRKTCSEAIMKNRNADGSPAYPVVFFNYNNYAKDDRVVRALRDEMAWKVDSLDEIAAKFDIPAAELKRSIK
EYNKHVGERKDPLFNRKMDTAEELTGPFVVSRIWPKVHYCMGGLKTDLGARVIDGRSMAPIKNLYAIGEVTGGIHGEARL
SSTSCLECLVMGIIVSETIKADLEGAV

Specific function: Catalyzes fumarate reduction using artificial electron donors such as methyl viologen. The physiological reductant is unknown, but evidence indicates that flavocytochrome c participates in electron transfer from formate to fumarate and possibly also to tr

COG id: COG1053

COG function: function code C; Succinate dehydrogenase/fumarate reductase, flavoprotein subunit

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 cytochrome c domain [H]

Homologues:

Organism=Caenorhabditis elegans, GI71986328, Length=459, Percent_Identity=26.5795206971678, Blast_Score=104, Evalue=1e-22,
Organism=Saccharomyces cerevisiae, GI6322511, Length=527, Percent_Identity=26.9449715370019, Blast_Score=113, Evalue=8e-26,
Organism=Saccharomyces cerevisiae, GI6320788, Length=495, Percent_Identity=26.0606060606061, Blast_Score=111, Evalue=2e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003953
- InterPro:   IPR013027
- InterPro:   IPR010960
- InterPro:   IPR011031
- InterPro:   IPR012286 [H]

Pfam domain/function: PF00890 FAD_binding_2 [H]

EC number: =1.3.99.1 [H]

Molecular weight: Translated: 54820; Mature: 54820

Theoretical pI: Translated: 7.55; Mature: 7.55

Prosite motif: PS00213 LIPOCALIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQGRRNFLKLSAGAAIGSLAATLPGTVQAKSCGEINWDESADVIVVGSGFAGLSAAVNAK
CCCCCCEEEEECCCHHHHHHHHCCCCEECCCCCCCCCCCCCCEEEEECCCHHHHHHHHHH
RQGLGSVLVLEKMQVIGGNSAINGGWLAIPKNPIQLAQGVNDDSPEELVKDQIISGRGMQ
HHCCCHHHHHHHHHHHCCCCCCCCCEEEECCCHHHHHCCCCCCCHHHHHHHHHHCCCCCC
NEPALRQIANRSLDAYDLCIDTGVKFRDGFNIQVGGHNKARAIRTQHGTGGDITTKLYEA
CCHHHHHHHHCCCCHHHHHHHCCCEECCCCEEEECCCCCCCEEEECCCCCCCHHHHHHHH
GVKEGVDHRLQHYIEDFIMDGQQIIGVKVRKNYRFPDLKTGTTIFIKANKAVVLANGGFA
HHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCEEEEEECCEEEEECCCCH
RNMALREAVDPSLDPTLDCTNAMGATGEVTLTAMAYGALPVHMNLIQTGHWGSPDEGGFG
HHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEEEECCCCCCCCCCCCC
WSNALLSIGWHQGVAISVLNGKRFMDERADRKTCSEAIMKNRNADGSPAYPVVFFNYNNY
HHHHHHEECCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCC
AKDDRVVRALRDEMAWKVDSLDEIAAKFDIPAAELKRSIKEYNKHVGERKDPLFNRKMDT
CCHHHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
AEELTGPFVVSRIWPKVHYCMGGLKTDLGARVIDGRSMAPIKNLYAIGEVTGGIHGEARL
HHHHCCCHHHHHHHHHHHHHHCCHHHCCCCEEECCCCCCCHHHHHHHHHHCCCCCCCCCC
SSTSCLECLVMGIIVSETIKADLEGAV
CHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MQGRRNFLKLSAGAAIGSLAATLPGTVQAKSCGEINWDESADVIVVGSGFAGLSAAVNAK
CCCCCCEEEEECCCHHHHHHHHCCCCEECCCCCCCCCCCCCCEEEEECCCHHHHHHHHHH
RQGLGSVLVLEKMQVIGGNSAINGGWLAIPKNPIQLAQGVNDDSPEELVKDQIISGRGMQ
HHCCCHHHHHHHHHHHCCCCCCCCCEEEECCCHHHHHCCCCCCCHHHHHHHHHHCCCCCC
NEPALRQIANRSLDAYDLCIDTGVKFRDGFNIQVGGHNKARAIRTQHGTGGDITTKLYEA
CCHHHHHHHHCCCCHHHHHHHCCCEECCCCEEEECCCCCCCEEEECCCCCCCHHHHHHHH
GVKEGVDHRLQHYIEDFIMDGQQIIGVKVRKNYRFPDLKTGTTIFIKANKAVVLANGGFA
HHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCEEEEEECCEEEEECCCCH
RNMALREAVDPSLDPTLDCTNAMGATGEVTLTAMAYGALPVHMNLIQTGHWGSPDEGGFG
HHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEEEECCCCCCCCCCCCC
WSNALLSIGWHQGVAISVLNGKRFMDERADRKTCSEAIMKNRNADGSPAYPVVFFNYNNY
HHHHHHEECCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCC
AKDDRVVRALRDEMAWKVDSLDEIAAKFDIPAAELKRSIKEYNKHVGERKDPLFNRKMDT
CCHHHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
AEELTGPFVVSRIWPKVHYCMGGLKTDLGARVIDGRSMAPIKNLYAIGEVTGGIHGEARL
HHHHCCCHHHHHHHHHHHHHHCCHHHCCCCEEECCCCCCCHHHHHHHHHHCCCCCCCCCC
SSTSCLECLVMGIIVSETIKADLEGAV
CHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11425747; 12368813; 10581551 [H]