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The map label for this gene is rbpD [H]

Identifier: 157959996

GI number: 157959996

Start: 181132

End: 181587

Strand: Reverse

Name: rbpD [H]

Synonym: Spea_0166

Alternate gene names: 157959996

Gene position: 181587-181132 (Counterclockwise)

Preceding gene: 157959999

Following gene: 157959994

Centisome position: 3.51

GC content: 40.13

Gene sequence:

>456_bases
ATGCAGAAGTCATTCTTGATCGTATTGGCCGTAGCCATTATTGGTGCACTCGCTATTTTTCAAATCGCACCGGATCTAAA
CGGCGCCATCGCTTTCTTTACTGGTGCTATCATCGCGAGCGTTATTTTTTCTCTTCAATCTAAAACGCCTGCTTCTACAA
CTAATAGTAATGAACCATATAGCGGTCCAACCATGACTCTATATGTAGGTAATCTTCCTTATCGTGTACACGAAGGAGAA
GTAAAAGCTCTATTTGGTGAGTTTGGCCCAGTAAACTCTGTACGTTTAGTTCGTGATCGTAAGACTGGCCGTCGTAAAGG
TTTTGGATTTATTGAAATGTCAGAAGCTGGCGCTAAGAAAGCTATGACAAAATTGAATGAATTCGATTTCCAAGAAAGAA
CATTAAAAGTGCGTGAGGCTAAATCTCAAGATTCCGATAAAAGTGATAACGCATAA

Upstream 100 bases:

>100_bases
TTTTTCAGCAACACACTAGTCTATTGGCTAATAATTCATTACCATAGTCTGGTTATTAACAGTTAGTTATCAATTCATTT
TTTCTTTAGAGATTATATTT

Downstream 100 bases:

>100_bases
TAAAGATGTATAGCTAACCTAGATTGGCTGAAGAGCGTGACACTATCTTAGTGAAGCCTTTTTCAGCTAGTCTGGTTGTT
AAACCCGCCGATATCTCTGC

Product: RNP-1 like RNA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 151; Mature: 151

Protein sequence:

>151_residues
MQKSFLIVLAVAIIGALAIFQIAPDLNGAIAFFTGAIIASVIFSLQSKTPASTTNSNEPYSGPTMTLYVGNLPYRVHEGE
VKALFGEFGPVNSVRLVRDRKTGRRKGFGFIEMSEAGAKKAMTKLNEFDFQERTLKVREAKSQDSDKSDNA

Sequences:

>Translated_151_residues
MQKSFLIVLAVAIIGALAIFQIAPDLNGAIAFFTGAIIASVIFSLQSKTPASTTNSNEPYSGPTMTLYVGNLPYRVHEGE
VKALFGEFGPVNSVRLVRDRKTGRRKGFGFIEMSEAGAKKAMTKLNEFDFQERTLKVREAKSQDSDKSDNA
>Mature_151_residues
MQKSFLIVLAVAIIGALAIFQIAPDLNGAIAFFTGAIIASVIFSLQSKTPASTTNSNEPYSGPTMTLYVGNLPYRVHEGE
VKALFGEFGPVNSVRLVRDRKTGRRKGFGFIEMSEAGAKKAMTKLNEFDFQERTLKVREAKSQDSDKSDNA

Specific function: Unknown

COG id: COG0724

COG function: function code R; RNA-binding proteins (RRM domain)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 RRM (RNA recognition motif) domain [H]

Homologues:

Organism=Homo sapiens, GI4557493, Length=79, Percent_Identity=45.5696202531646, Blast_Score=69, Evalue=1e-12,
Organism=Homo sapiens, GI35493811, Length=102, Percent_Identity=37.2549019607843, Blast_Score=67, Evalue=4e-12,
Organism=Homo sapiens, GI4757926, Length=102, Percent_Identity=37.2549019607843, Blast_Score=67, Evalue=4e-12,
Organism=Homo sapiens, GI14149675, Length=79, Percent_Identity=44.3037974683544, Blast_Score=65, Evalue=2e-11,
Organism=Homo sapiens, GI116734698, Length=88, Percent_Identity=35.2272727272727, Blast_Score=64, Evalue=6e-11,
Organism=Homo sapiens, GI116734694, Length=88, Percent_Identity=35.2272727272727, Blast_Score=63, Evalue=9e-11,
Organism=Caenorhabditis elegans, GI17508567, Length=78, Percent_Identity=47.4358974358974, Blast_Score=73, Evalue=5e-14,
Organism=Caenorhabditis elegans, GI17508587, Length=82, Percent_Identity=39.0243902439024, Blast_Score=68, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17508585, Length=74, Percent_Identity=43.2432432432432, Blast_Score=67, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24582417, Length=94, Percent_Identity=40.4255319148936, Blast_Score=70, Evalue=8e-13,
Organism=Drosophila melanogaster, GI45550943, Length=94, Percent_Identity=40.4255319148936, Blast_Score=70, Evalue=8e-13,
Organism=Drosophila melanogaster, GI24582419, Length=94, Percent_Identity=40.4255319148936, Blast_Score=70, Evalue=8e-13,
Organism=Drosophila melanogaster, GI24582423, Length=94, Percent_Identity=40.4255319148936, Blast_Score=70, Evalue=8e-13,
Organism=Drosophila melanogaster, GI24582421, Length=94, Percent_Identity=40.4255319148936, Blast_Score=70, Evalue=8e-13,
Organism=Drosophila melanogaster, GI17137710, Length=81, Percent_Identity=43.2098765432099, Blast_Score=69, Evalue=1e-12,
Organism=Drosophila melanogaster, GI19920866, Length=94, Percent_Identity=40.4255319148936, Blast_Score=68, Evalue=3e-12,
Organism=Drosophila melanogaster, GI24582412, Length=94, Percent_Identity=40.4255319148936, Blast_Score=68, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012677
- InterPro:   IPR000504
- InterPro:   IPR015465 [H]

Pfam domain/function: PF00076 RRM_1 [H]

EC number: NA

Molecular weight: Translated: 16467; Mature: 16467

Theoretical pI: Translated: 10.04; Mature: 10.04

Prosite motif: PS50102 RRM

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQKSFLIVLAVAIIGALAIFQIAPDLNGAIAFFTGAIIASVIFSLQSKTPASTTNSNEPY
CCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
SGPTMTLYVGNLPYRVHEGEVKALFGEFGPVNSVRLVRDRKTGRRKGFGFIEMSEAGAKK
CCCEEEEEECCCCEEEECCHHHHHHHCCCCCCCEEEEECCCCCCCCCCCEEEECHHHHHH
AMTKLNEFDFQERTLKVREAKSQDSDKSDNA
HHHHHHHCCHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure
MQKSFLIVLAVAIIGALAIFQIAPDLNGAIAFFTGAIIASVIFSLQSKTPASTTNSNEPY
CCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
SGPTMTLYVGNLPYRVHEGEVKALFGEFGPVNSVRLVRDRKTGRRKGFGFIEMSEAGAKK
CCCEEEEEECCCCEEEECCHHHHHHHCCCCCCCEEEEECCCCCCCCCCCEEEECHHHHHH
AMTKLNEFDFQERTLKVREAKSQDSDKSDNA
HHHHHHHCCHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11759840 [H]