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The map label for this gene is 157825968

Identifier: 157825968

GI number: 157825968

Start: 823860

End: 824477

Strand: Direct

Name: 157825968

Synonym: A1C_04570

Alternate gene names: NA

Gene position: 823860-824477 (Clockwise)

Preceding gene: 157825967

Following gene: 157825969

Centisome position: 66.92

GC content: 30.74

Gene sequence:

>618_bases
ATGAAAATGCAATCAAATATTATAAAAATAATTATCGTAATTAGCTTGTTAATAGGAGTAGGAGCACTATATTTGTTGTT
ATCTTTAAGCACACCTGAAAAACCGCTTGCCGGTCAAGTTAATATCTATGAAGATAACGTAAACATCGGCGGTGATTTTG
AACTAATAGACCAAAATGGAGAGATATTTAATAGTGAAACGTTGAAAGGGAACTTAAGCCTTGTTTACTTTGGATTTACT
AGTTGTCCTGATATATGCCCAACCTCTCTAAATAACATGACGAAAATTGTAGAAATTTTAAATAAACACAAAATAGATAT
TCTACCTATTTTTATCACTATTGATCCCAAACGTGATACACCTGAAGTGCTTAAAGAATATTTAAAACATTTTCATCCGA
AATTTATAGGTCTTACCGGTAACGAACAGCAAATAAAAGATGTAGCTGATAAATTTAAGGTTTTCTATGCTCGTGTAAAT
GGTGATGATGACGACCCGAACTATATGCTTGATCATTCATCTTTTACCTATTTAATCGATGCAAATGGAAAATATCTAAA
ACATTTCTATTTAGATTCTTCACCTAAGGACATTATGGAGTTTTTAAGAAATGAATAA

Upstream 100 bases:

>100_bases
CTTTACGCTGGATTACCGCCTACGCGGGAATGAGATCGAACGTATTACAACAAAACCTACAAGTGAGCTAGGATTACAAC
TAGAAAATTGGTAATATCTT

Downstream 100 bases:

>100_bases
TTATATATTGGTAGCGTATTTATTTACCTTCTTAACCTTATCCATACTATTAATCGTAATTTTTTTAAATTACAAGTCAC
TGAAAAATAAACAGAACTTT

Product: sco2 protein precursor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 205; Mature: 205

Protein sequence:

>205_residues
MKMQSNIIKIIIVISLLIGVGALYLLLSLSTPEKPLAGQVNIYEDNVNIGGDFELIDQNGEIFNSETLKGNLSLVYFGFT
SCPDICPTSLNNMTKIVEILNKHKIDILPIFITIDPKRDTPEVLKEYLKHFHPKFIGLTGNEQQIKDVADKFKVFYARVN
GDDDDPNYMLDHSSFTYLIDANGKYLKHFYLDSSPKDIMEFLRNE

Sequences:

>Translated_205_residues
MKMQSNIIKIIIVISLLIGVGALYLLLSLSTPEKPLAGQVNIYEDNVNIGGDFELIDQNGEIFNSETLKGNLSLVYFGFT
SCPDICPTSLNNMTKIVEILNKHKIDILPIFITIDPKRDTPEVLKEYLKHFHPKFIGLTGNEQQIKDVADKFKVFYARVN
GDDDDPNYMLDHSSFTYLIDANGKYLKHFYLDSSPKDIMEFLRNE
>Mature_205_residues
MKMQSNIIKIIIVISLLIGVGALYLLLSLSTPEKPLAGQVNIYEDNVNIGGDFELIDQNGEIFNSETLKGNLSLVYFGFT
SCPDICPTSLNNMTKIVEILNKHKIDILPIFITIDPKRDTPEVLKEYLKHFHPKFIGLTGNEQQIKDVADKFKVFYARVN
GDDDDPNYMLDHSSFTYLIDANGKYLKHFYLDSSPKDIMEFLRNE

Specific function: Unknown

COG id: COG1999

COG function: function code R; Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the SCO1/2 family [H]

Homologues:

Organism=Homo sapiens, GI4759068, Length=143, Percent_Identity=39.1608391608392, Blast_Score=123, Evalue=1e-28,
Organism=Homo sapiens, GI281182727, Length=156, Percent_Identity=34.6153846153846, Blast_Score=122, Evalue=2e-28,
Organism=Homo sapiens, GI281182722, Length=156, Percent_Identity=34.6153846153846, Blast_Score=122, Evalue=2e-28,
Organism=Homo sapiens, GI281182716, Length=156, Percent_Identity=34.6153846153846, Blast_Score=122, Evalue=2e-28,
Organism=Homo sapiens, GI153791313, Length=156, Percent_Identity=34.6153846153846, Blast_Score=122, Evalue=2e-28,
Organism=Caenorhabditis elegans, GI17531419, Length=157, Percent_Identity=39.4904458598726, Blast_Score=134, Evalue=5e-32,
Organism=Saccharomyces cerevisiae, GI6319498, Length=185, Percent_Identity=43.2432432432432, Blast_Score=151, Evalue=5e-38,
Organism=Saccharomyces cerevisiae, GI6319511, Length=140, Percent_Identity=41.4285714285714, Blast_Score=126, Evalue=3e-30,
Organism=Drosophila melanogaster, GI19920710, Length=183, Percent_Identity=35.5191256830601, Blast_Score=136, Evalue=1e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003782
- InterPro:   IPR012336
- InterPro:   IPR012335 [H]

Pfam domain/function: PF02630 SCO1-SenC [H]

EC number: NA

Molecular weight: Translated: 23340; Mature: 23340

Theoretical pI: Translated: 4.90; Mature: 4.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKMQSNIIKIIIVISLLIGVGALYLLLSLSTPEKPLAGQVNIYEDNVNIGGDFELIDQNG
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCCEEEEECCC
EIFNSETLKGNLSLVYFGFTSCPDICPTSLNNMTKIVEILNKHKIDILPIFITIDPKRDT
CEECCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEEEEECCCCC
PEVLKEYLKHFHPKFIGLTGNEQQIKDVADKFKVFYARVNGDDDDPNYMLDHSSFTYLID
HHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHEEEEEEECCCCCCCCEEEECCCEEEEEE
ANGKYLKHFYLDSSPKDIMEFLRNE
CCCCEEEEEEECCCHHHHHHHHHCC
>Mature Secondary Structure
MKMQSNIIKIIIVISLLIGVGALYLLLSLSTPEKPLAGQVNIYEDNVNIGGDFELIDQNG
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCCEEEEECCC
EIFNSETLKGNLSLVYFGFTSCPDICPTSLNNMTKIVEILNKHKIDILPIFITIDPKRDT
CEECCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEEEEECCCCC
PEVLKEYLKHFHPKFIGLTGNEQQIKDVADKFKVFYARVNGDDDDPNYMLDHSSFTYLID
HHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHEEEEEEECCCCCCCCEEEECCCEEEEEE
ANGKYLKHFYLDSSPKDIMEFLRNE
CCCCEEEEEEECCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11557893 [H]