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The map label for this gene is rpoZ [H]

Identifier: 157825958

GI number: 157825958

Start: 810006

End: 810389

Strand: Reverse

Name: rpoZ [H]

Synonym: A1C_04500

Alternate gene names: 157825958

Gene position: 810389-810006 (Counterclockwise)

Preceding gene: 157825959

Following gene: 157825957

Centisome position: 65.83

GC content: 32.55

Gene sequence:

>384_bases
ATGGCAAGAATTACAGCAGAAGATTGTAATAAAATTATACCGGATAGGTTTCGTCTTGTTGTACTAGCAACAAGATATGC
TAAATTATTAAATTATAAAGTAGAAACTAATCAAATCAAAAAAGAAAAACGTGATAAGCCTCCTGTTATCGCATTACGTA
GAATTGCGGCCGGAAAAGTATCGGTAGAACAGTTAGAGCAAGACTTAATAAATAGTCTGCGTACAAAAACTATGATAGAG
CCGCTTGTTAATCAAGATGAATCAGAGGATATAAAAGAAGAATTTGAGTACTTATCTGAAGTTTGTATAACGGAAGATTA
TTCTGATTTAGATGATCAAATCTTTATTGATGAGAATGGCGAAGATTATGACCCCGATAAGTAA

Upstream 100 bases:

>100_bases
TGCGTTCCTCGCCTTGTGAACTCCTTACTCTTTTTGAAGTTGATCTTTGTATACTCATTTCCTATTTATTTGTAGTATAC
TATTTTTAACGGAGAAAATT

Downstream 100 bases:

>100_bases
ATGCTTATCGGTGTCGGTACTGATATAGTACAAATTCTTAGAATCGAAAAAATATTGCATTTATATCCAGAACTTTTTGC
TAAAAGAATTCTAGCCTCAA

Product: DNA-directed RNA polymerase subunit omega

Products: NA

Alternate protein names: RNAP omega subunit; RNA polymerase omega subunit; Transcriptase subunit omega [H]

Number of amino acids: Translated: 127; Mature: 126

Protein sequence:

>127_residues
MARITAEDCNKIIPDRFRLVVLATRYAKLLNYKVETNQIKKEKRDKPPVIALRRIAAGKVSVEQLEQDLINSLRTKTMIE
PLVNQDESEDIKEEFEYLSEVCITEDYSDLDDQIFIDENGEDYDPDK

Sequences:

>Translated_127_residues
MARITAEDCNKIIPDRFRLVVLATRYAKLLNYKVETNQIKKEKRDKPPVIALRRIAAGKVSVEQLEQDLINSLRTKTMIE
PLVNQDESEDIKEEFEYLSEVCITEDYSDLDDQIFIDENGEDYDPDK
>Mature_126_residues
ARITAEDCNKIIPDRFRLVVLATRYAKLLNYKVETNQIKKEKRDKPPVIALRRIAAGKVSVEQLEQDLINSLRTKTMIEP
LVNQDESEDIKEEFEYLSEVCITEDYSDLDDQIFIDENGEDYDPDK

Specific function: Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits [H]

COG id: COG1758

COG function: function code K; DNA-directed RNA polymerase, subunit K/omega

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA polymerase subunit omega family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003716
- InterPro:   IPR006110
- InterPro:   IPR012293 [H]

Pfam domain/function: PF01192 RNA_pol_Rpb6 [H]

EC number: =2.7.7.6 [H]

Molecular weight: Translated: 14812; Mature: 14681

Theoretical pI: Translated: 4.30; Mature: 4.30

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARITAEDCNKIIPDRFRLVVLATRYAKLLNYKVETNQIKKEKRDKPPVIALRRIAAGKV
CCCCCHHHHHHHCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHCCCC
SVEQLEQDLINSLRTKTMIEPLVNQDESEDIKEEFEYLSEVCITEDYSDLDDQIFIDENG
CHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCC
EDYDPDK
CCCCCCC
>Mature Secondary Structure 
ARITAEDCNKIIPDRFRLVVLATRYAKLLNYKVETNQIKKEKRDKPPVIALRRIAAGKV
CCCCHHHHHHHCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHCCCC
SVEQLEQDLINSLRTKTMIEPLVNQDESEDIKEEFEYLSEVCITEDYSDLDDQIFIDENG
CHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCC
EDYDPDK
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA