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The map label for this gene is nusB

Identifier: 157825345

GI number: 157825345

Start: 220211

End: 220681

Strand: Direct

Name: nusB

Synonym: A1C_01135

Alternate gene names: 157825345

Gene position: 220211-220681 (Clockwise)

Preceding gene: 157825341

Following gene: 157825346

Centisome position: 17.89

GC content: 29.94

Gene sequence:

>471_bases
ATGAGTTCAAATAAAATTAATAAAAAATCGATTGCACGTATTGCAGCAGTGCAAGCTATTTATCAAAACATATTGCAAAA
TAACGACGATATGGATGATATCATGCAAAATGTACTTTCTTTTTATCGAAATGATAGTTCTATAACAAATTTAACGGGCA
ATTTAAAAATATCATTAAGTATAAGTCATTTTAAAATCCTGGTAAAGTCAGTATTTGAAAATATTAATAAACTAGACGAA
ATTATCGACAATCATTTGACAAATGATAAAGATCCCGCACATATGCCGATCTTACTACGAGCTTTATTGCGTGCTGGTAT
ATATGAGCTATTGTTCTATCCTACTACGCCTGCTAAAGTAGTAATTAACGAATATACGGATATAGCAAATGATATGTTAA
ATGGATACGAGATCGGTTTTGTTAATTCGGTATTAGACACAATAGCCAAAGAGAAGAATAAAATTTCATGA

Upstream 100 bases:

>100_bases
ATTGTTACTGTTTGGTGATGTAATTCCCGCTTAGGCGGGAATGACATCAAGCCATCTCATACTCACAATAACGAAAATTA
AATTTTAAATTGCTTTCTTT

Downstream 100 bases:

>100_bases
CAAATAATTTAAGCGGCTATAGAAATAAATTCGTTAGAGTTAAGACTTCTAAAAAACGTACTGTTTCTTCTGGTAATTGG
CTTAGACGCCAATTAAACGA

Product: transcription antitermination protein NusB

Products: NA

Alternate protein names: Protein nusB

Number of amino acids: Translated: 156; Mature: 155

Protein sequence:

>156_residues
MSSNKINKKSIARIAAVQAIYQNILQNNDDMDDIMQNVLSFYRNDSSITNLTGNLKISLSISHFKILVKSVFENINKLDE
IIDNHLTNDKDPAHMPILLRALLRAGIYELLFYPTTPAKVVINEYTDIANDMLNGYEIGFVNSVLDTIAKEKNKIS

Sequences:

>Translated_156_residues
MSSNKINKKSIARIAAVQAIYQNILQNNDDMDDIMQNVLSFYRNDSSITNLTGNLKISLSISHFKILVKSVFENINKLDE
IIDNHLTNDKDPAHMPILLRALLRAGIYELLFYPTTPAKVVINEYTDIANDMLNGYEIGFVNSVLDTIAKEKNKIS
>Mature_155_residues
SSNKINKKSIARIAAVQAIYQNILQNNDDMDDIMQNVLSFYRNDSSITNLTGNLKISLSISHFKILVKSVFENINKLDEI
IDNHLTNDKDPAHMPILLRALLRAGIYELLFYPTTPAKVVINEYTDIANDMLNGYEIGFVNSVLDTIAKEKNKIS

Specific function: Involved in the transcription termination process

COG id: COG0781

COG function: function code K; Transcription termination factor

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nusB family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NUSB_RICAH (A8GMD2)

Other databases:

- EMBL:   CP000847
- RefSeq:   YP_001493065.1
- ProteinModelPortal:   A8GMD2
- SMR:   A8GMD2
- STRING:   A8GMD2
- GeneID:   5645195
- GenomeReviews:   CP000847_GR
- KEGG:   rak:A1C_01135
- NMPDR:   fig|293614.3.peg.216
- eggNOG:   COG0781
- HOGENOM:   HBG734409
- OMA:   FKMLVKS
- ProtClustDB:   PRK00202
- BioCyc:   RAKA293614:A1C_01135-MONOMER
- HAMAP:   MF_00073
- InterPro:   IPR011605
- InterPro:   IPR006027
- Gene3D:   G3DSA:1.10.940.10
- TIGRFAMs:   TIGR01951

Pfam domain/function: PF01029 NusB; SSF48013 NusB_RsmB_TIM44

EC number: NA

Molecular weight: Translated: 17633; Mature: 17501

Theoretical pI: Translated: 6.26; Mature: 6.26

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSNKINKKSIARIAAVQAIYQNILQNNDDMDDIMQNVLSFYRNDSSITNLTGNLKISLS
CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCHHEECCCEEEEEE
ISHFKILVKSVFENINKLDEIIDNHLTNDKDPAHMPILLRALLRAGIYELLFYPTTPAKV
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHH
VINEYTDIANDMLNGYEIGFVNSVLDTIAKEKNKIS
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
SSNKINKKSIARIAAVQAIYQNILQNNDDMDDIMQNVLSFYRNDSSITNLTGNLKISLS
CCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCHHEECCCEEEEEE
ISHFKILVKSVFENINKLDEIIDNHLTNDKDPAHMPILLRALLRAGIYELLFYPTTPAKV
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHH
VINEYTDIANDMLNGYEIGFVNSVLDTIAKEKNKIS
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA