| Definition | Serratia proteamaculans 568 chromosome, complete genome. |
|---|---|
| Accession | NC_009832 |
| Length | 5,448,853 |
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The map label for this gene is hsdM [H]
Identifier: 157372316
GI number: 157372316
Start: 4535688
End: 4538279
Strand: Direct
Name: hsdM [H]
Synonym: Spro_4082
Alternate gene names: 157372316
Gene position: 4535688-4538279 (Clockwise)
Preceding gene: 157372315
Following gene: 157372317
Centisome position: 83.24
GC content: 45.02
Gene sequence:
>2592_bases TTGAATAAACAACAGCTTGCGGCAAAAATCTGGGAATCTGCTAACCAGATGCGTTCTAAGATTGAAGCCAACGAATACAA AGACTACATACTCGGCTTTATCTTCTACAAGTACCTAAGCGACCAGCTAGTGCAGTTTGTCACCAGACAGGGGATGACGT CTGAAGACATCAAAACCCTCAATGAAGAAGACACCGACACAGTTGAATACGTGCAAAGCAACCTGGGCTACTTTATTGCC TACGATAATCTGTTTTCTACATGGATTGATCCAACATCCGAATTTGATGAATCTAACGTGCGAGATGCGCTCTCGGCCTT TAGCCGTTTGATTTCGCCAACTTACAAAAAACTGTTTGACGGTATTTTTACCACCTTAGAAACAGGTTTAAGCAAACTGG GTGAAAGTGCAGGCAAACGCACCAAAGCCATCAGCGACTTACTACACCTGATCAAAAGCATTCCCATGAATAGTAATCAA GGGTATGACGTACTGGGCTACATTTACGAATACCTGCTTGAGAAATTTGCTGCCAATGCGGGTAAAAAAGCCGGTGAGTT TTACACGCCTCATGAAGTCTCGGTACTCATGTCAAACATCATCGCCCATGAGTTAAAACACAAAGATACCATTAAAATTT ACGACCCTACTTCCGGCTCTGGCTCGTTGCTAATCAATATCGGTGAGGCGTTCGAGAAATACGCTAAAAACAAAGACAGC ATCACCTATTTCGCCCAAGAGTTAAAAGCCAATACCTACAACCTAACCCGTATGAATCTCATCATGCGCGGTATCAAAGC CAGCAACATTAAAACCCGTAATGGCGACACCCTGGAAGAGGATTGGCCGTATTTTGATGACAGCGATCCCCAAGGTTCAT ACTACGCCTTACATGTCGATGCCGTGGTATCCAACCCGCCTTACTCACAAAACTGGGACCCCAGCTTTAAAGAGAGCGAT CCACGCTATTCACGTTTTGGCCTGGCACCTAAAACCAAAGCTGATTTTGCTTTTTTACTGCACGACCTCTACCACCTAAA ACCCGATGGCATTATGGCTATAGTTCTTCCCCATGGTGTCTTGTTCCGTGGCGGTGAAGAAGGTCAAATTCGCAAGCAAC TCATTGAGCAGAATCATATTGAGACCGTTATCGGTTTACCGGCCAATATCTTTTTTGGCACCGGCATTCCAACGGTGATT TTAGTACTCAGACAAAAACGCCAAAACACCGATGTATTGGTAGTCGATGCCTCCAAACACTTTATGAAAGAAGGCAAAAA CAACAAACTGCAAGCCAGTGATATCAAGCGCATTACTGATGCGGTGATTAACCGAGAGAGTATCGACAAGTTCTCACAAC TGGTGAGCAAAGAAACCCTGCGCGACAACGGTTACAACCTCAACATACCGCGCTATGTGGATTCCTCTGAGACGGCACAA ACCTGGGATTTACACGCCACCATGCTCGGCGGCATCCCCAACTGCGAAATTGCCGAGCTACACAATTTTTGGCAAGCTTT CCCGCAATTACACGGCACTCTGTTTACGCCAAAATCCGCCGCTTACAGTGAGCTGGCCATTGCCAAACAAGACGTTAACG CCAGCATCAGTGGGCACCCACAAGTGTTAGCGTTTATCAGCGCCTACAACCAAGCCTTTAATAGCTTTGATGACCACCTA AACACCCAATTAATACAAAACTGGGAAAGCGTAAAGCGTAACCAACAAGAGGCGGTATTAAGTGCCAAGCTATTTACTCG CTTAGCCCCTATTGCCTTAATCGACAAATACCAGGCTTACCAATTTCTAAACAACCAATGGCAACTCATCAGCGCCGATT TAGAAATGATGCAAACCGAAGGCTTTGCCGCCGCCAAACAAGTTGCTCCCAATATTGTTATAAAGAAAAAAAACGGCCAA GACACCGAGGTACAAGATGGCTGGAAAGGCCACATACTGCCGTTTGATTTAGTGCAACAAACTTACTTAAGTGATGACTT ACAAGCCTTGGCAGCTCAAGAAACTCGCCTGGCAGAGATCGCCAGCACGCTGGAAGAAATTTTAGAATCCCTGAGCGAAG AAGAAAAAGAACAAGATACGGTAAAAGAAAGCAAAGATGGCTTTTCCAATGCCGAATTAAGCAAAGCCGCCAAAGCCTTC TTGAAAGAACAAAAAGATAGCAAAGTTAAATTCGCAGAAGAAAGCTATGAAACCAAAATCATTCGCGCAAGCAAATTAAT TGATGAAGAAAAAGCCCTGAAAAAAATGGTCAAAGATGCGGCCGCTACCCTGCACTCAAAAACCAAAACAACCATAGAAA CCTTAACCGATGAACAGGTGAACAACCTGCTGCACCTTAAATGGATTGCGCCATTAAGCACCGAACTCGCCGCCATGCCA AACGCCGTGATTAGCCAACTGACTAGCCAAGTGCAAGCCCTTGCTGATAAATACGCCGTCACTTACTCGCAGGTGGCTAA TGAGATTAAAACCACCGAGCAAGAACTGGCGGAAATGATGGGTGAACTCACCGGTAATGAGTTTGATATGCAAGGCTTGG TAGAGCTCACTAACTTATTGAAGGATGAATAA
Upstream 100 bases:
>100_bases CAGTTAAGCCCAGCAGCTAGCAAGAAGCTCTTATGAAACGTACAATCAAAACCCTAAAATAGACTTTTTCGAAAAAGAAT TGCTTTTAACAGGACTAATT
Downstream 100 bases:
>100_bases GATGAGTGTGGATAACAAGGTGCCAGAGATTCGGTTTAAGGGGTTTAGTGAGGCGTGGGTTGATAGTGATCTGAAAAGTT TTAGTGATTCGTTTAGTTAT
Product: type I restriction-modification system, M subunit
Products: NA
Alternate protein names: M.EcoR124II [H]
Number of amino acids: Translated: 863; Mature: 863
Protein sequence:
>863_residues MNKQQLAAKIWESANQMRSKIEANEYKDYILGFIFYKYLSDQLVQFVTRQGMTSEDIKTLNEEDTDTVEYVQSNLGYFIA YDNLFSTWIDPTSEFDESNVRDALSAFSRLISPTYKKLFDGIFTTLETGLSKLGESAGKRTKAISDLLHLIKSIPMNSNQ GYDVLGYIYEYLLEKFAANAGKKAGEFYTPHEVSVLMSNIIAHELKHKDTIKIYDPTSGSGSLLINIGEAFEKYAKNKDS ITYFAQELKANTYNLTRMNLIMRGIKASNIKTRNGDTLEEDWPYFDDSDPQGSYYALHVDAVVSNPPYSQNWDPSFKESD PRYSRFGLAPKTKADFAFLLHDLYHLKPDGIMAIVLPHGVLFRGGEEGQIRKQLIEQNHIETVIGLPANIFFGTGIPTVI LVLRQKRQNTDVLVVDASKHFMKEGKNNKLQASDIKRITDAVINRESIDKFSQLVSKETLRDNGYNLNIPRYVDSSETAQ TWDLHATMLGGIPNCEIAELHNFWQAFPQLHGTLFTPKSAAYSELAIAKQDVNASISGHPQVLAFISAYNQAFNSFDDHL NTQLIQNWESVKRNQQEAVLSAKLFTRLAPIALIDKYQAYQFLNNQWQLISADLEMMQTEGFAAAKQVAPNIVIKKKNGQ DTEVQDGWKGHILPFDLVQQTYLSDDLQALAAQETRLAEIASTLEEILESLSEEEKEQDTVKESKDGFSNAELSKAAKAF LKEQKDSKVKFAEESYETKIIRASKLIDEEKALKKMVKDAAATLHSKTKTTIETLTDEQVNNLLHLKWIAPLSTELAAMP NAVISQLTSQVQALADKYAVTYSQVANEIKTTEQELAEMMGELTGNEFDMQGLVELTNLLKDE
Sequences:
>Translated_863_residues MNKQQLAAKIWESANQMRSKIEANEYKDYILGFIFYKYLSDQLVQFVTRQGMTSEDIKTLNEEDTDTVEYVQSNLGYFIA YDNLFSTWIDPTSEFDESNVRDALSAFSRLISPTYKKLFDGIFTTLETGLSKLGESAGKRTKAISDLLHLIKSIPMNSNQ GYDVLGYIYEYLLEKFAANAGKKAGEFYTPHEVSVLMSNIIAHELKHKDTIKIYDPTSGSGSLLINIGEAFEKYAKNKDS ITYFAQELKANTYNLTRMNLIMRGIKASNIKTRNGDTLEEDWPYFDDSDPQGSYYALHVDAVVSNPPYSQNWDPSFKESD PRYSRFGLAPKTKADFAFLLHDLYHLKPDGIMAIVLPHGVLFRGGEEGQIRKQLIEQNHIETVIGLPANIFFGTGIPTVI LVLRQKRQNTDVLVVDASKHFMKEGKNNKLQASDIKRITDAVINRESIDKFSQLVSKETLRDNGYNLNIPRYVDSSETAQ TWDLHATMLGGIPNCEIAELHNFWQAFPQLHGTLFTPKSAAYSELAIAKQDVNASISGHPQVLAFISAYNQAFNSFDDHL NTQLIQNWESVKRNQQEAVLSAKLFTRLAPIALIDKYQAYQFLNNQWQLISADLEMMQTEGFAAAKQVAPNIVIKKKNGQ DTEVQDGWKGHILPFDLVQQTYLSDDLQALAAQETRLAEIASTLEEILESLSEEEKEQDTVKESKDGFSNAELSKAAKAF LKEQKDSKVKFAEESYETKIIRASKLIDEEKALKKMVKDAAATLHSKTKTTIETLTDEQVNNLLHLKWIAPLSTELAAMP NAVISQLTSQVQALADKYAVTYSQVANEIKTTEQELAEMMGELTGNEFDMQGLVELTNLLKDE >Mature_863_residues MNKQQLAAKIWESANQMRSKIEANEYKDYILGFIFYKYLSDQLVQFVTRQGMTSEDIKTLNEEDTDTVEYVQSNLGYFIA YDNLFSTWIDPTSEFDESNVRDALSAFSRLISPTYKKLFDGIFTTLETGLSKLGESAGKRTKAISDLLHLIKSIPMNSNQ GYDVLGYIYEYLLEKFAANAGKKAGEFYTPHEVSVLMSNIIAHELKHKDTIKIYDPTSGSGSLLINIGEAFEKYAKNKDS ITYFAQELKANTYNLTRMNLIMRGIKASNIKTRNGDTLEEDWPYFDDSDPQGSYYALHVDAVVSNPPYSQNWDPSFKESD PRYSRFGLAPKTKADFAFLLHDLYHLKPDGIMAIVLPHGVLFRGGEEGQIRKQLIEQNHIETVIGLPANIFFGTGIPTVI LVLRQKRQNTDVLVVDASKHFMKEGKNNKLQASDIKRITDAVINRESIDKFSQLVSKETLRDNGYNLNIPRYVDSSETAQ TWDLHATMLGGIPNCEIAELHNFWQAFPQLHGTLFTPKSAAYSELAIAKQDVNASISGHPQVLAFISAYNQAFNSFDDHL NTQLIQNWESVKRNQQEAVLSAKLFTRLAPIALIDKYQAYQFLNNQWQLISADLEMMQTEGFAAAKQVAPNIVIKKKNGQ DTEVQDGWKGHILPFDLVQQTYLSDDLQALAAQETRLAEIASTLEEILESLSEEEKEQDTVKESKDGFSNAELSKAAKAF LKEQKDSKVKFAEESYETKIIRASKLIDEEKALKKMVKDAAATLHSKTKTTIETLTDEQVNNLLHLKWIAPLSTELAAMP NAVISQLTSQVQALADKYAVTYSQVANEIKTTEQELAEMMGELTGNEFDMQGLVELTNLLKDE
Specific function: Methylation of specific adenine residues; required for both restriction and modification activities. The EcoR124/3 I enzyme recognizes 5'-GAAN(7)RTCG-3' [H]
COG id: COG0286
COG function: function code V; Type I restriction-modification system methyltransferase subunit
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the N(4)/N(6)-methyltransferase family [H]
Homologues:
Organism=Escherichia coli, GI1790808, Length=337, Percent_Identity=25.8160237388724, Blast_Score=92, Evalue=1e-19,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR022749 - InterPro: IPR003356 - InterPro: IPR002052 - InterPro: IPR002296 - InterPro: IPR004546 [H]
Pfam domain/function: PF12161 HsdM_N; PF02384 N6_Mtase [H]
EC number: =2.1.1.72 [H]
Molecular weight: Translated: 97339; Mature: 97339
Theoretical pI: Translated: 4.99; Mature: 4.99
Prosite motif: PS00092 N6_MTASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.1 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.1 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNKQQLAAKIWESANQMRSKIEANEYKDYILGFIFYKYLSDQLVQFVTRQGMTSEDIKTL CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHC NEEDTDTVEYVQSNLGYFIAYDNLFSTWIDPTSEFDESNVRDALSAFSRLISPTYKKLFD CCCCCHHHHHHHHCCCEEEEEHHHHHHHCCCCHHCCHHHHHHHHHHHHHHHCHHHHHHHH GIFTTLETGLSKLGESAGKRTKAISDLLHLIKSIPMNSNQGYDVLGYIYEYLLEKFAANA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCC GKKAGEFYTPHEVSVLMSNIIAHELKHKDTIKIYDPTSGSGSLLINIGEAFEKYAKNKDS CCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCEEEEHHHHHHHHHCCCCH ITYFAQELKANTYNLTRMNLIMRGIKASNIKTRNGDTLEEDWPYFDDSDPQGSYYALHVD HHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHCCCCCCCCCCCCCEEEEEEE AVVSNPPYSQNWDPSFKESDPRYSRFGLAPKTKADFAFLLHDLYHLKPDGIMAIVLPHGV EEECCCCCCCCCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCE LFRGGEEGQIRKQLIEQNHIETVIGLPANIFFGTGIPTVILVLRQKRQNTDVLVVDASKH EEECCCCCHHHHHHHHHHHHHHHHCCCCHHEECCCHHHHHHHHHHHCCCCCEEEEECHHH FMKEGKNNKLQASDIKRITDAVINRESIDKFSQLVSKETLRDNGYNLNIPRYVDSSETAQ HHHCCCCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCH TWDLHATMLGGIPNCEIAELHNFWQAFPQLHGTLFTPKSAAYSELAIAKQDVNASISGHP HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCH QVLAFISAYNQAFNSFDDHLNTQLIQNWESVKRNQQEAVLSAKLFTRLAPIALIDKYQAY HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QFLNNQWQLISADLEMMQTEGFAAAKQVAPNIVIKKKNGQDTEVQDGWKGHILPFDLVQQ HHHCCCHHHHHHHHHHHHHCCHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHH TYLSDDLQALAAQETRLAEIASTLEEILESLSEEEKEQDTVKESKDGFSNAELSKAAKAF HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH LKEQKDSKVKFAEESYETKIIRASKLIDEEKALKKMVKDAAATLHSKTKTTIETLTDEQV HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH NNLLHLKWIAPLSTELAAMPNAVISQLTSQVQALADKYAVTYSQVANEIKTTEQELAEMM HCEEEEEEECCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GELTGNEFDMQGLVELTNLLKDE HHHCCCCCCHHHHHHHHHHHCCC >Mature Secondary Structure MNKQQLAAKIWESANQMRSKIEANEYKDYILGFIFYKYLSDQLVQFVTRQGMTSEDIKTL CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHC NEEDTDTVEYVQSNLGYFIAYDNLFSTWIDPTSEFDESNVRDALSAFSRLISPTYKKLFD CCCCCHHHHHHHHCCCEEEEEHHHHHHHCCCCHHCCHHHHHHHHHHHHHHHCHHHHHHHH GIFTTLETGLSKLGESAGKRTKAISDLLHLIKSIPMNSNQGYDVLGYIYEYLLEKFAANA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCC GKKAGEFYTPHEVSVLMSNIIAHELKHKDTIKIYDPTSGSGSLLINIGEAFEKYAKNKDS CCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCEEEEHHHHHHHHHCCCCH ITYFAQELKANTYNLTRMNLIMRGIKASNIKTRNGDTLEEDWPYFDDSDPQGSYYALHVD HHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHCCCCCCCCCCCCCEEEEEEE AVVSNPPYSQNWDPSFKESDPRYSRFGLAPKTKADFAFLLHDLYHLKPDGIMAIVLPHGV EEECCCCCCCCCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCE LFRGGEEGQIRKQLIEQNHIETVIGLPANIFFGTGIPTVILVLRQKRQNTDVLVVDASKH EEECCCCCHHHHHHHHHHHHHHHHCCCCHHEECCCHHHHHHHHHHHCCCCCEEEEECHHH FMKEGKNNKLQASDIKRITDAVINRESIDKFSQLVSKETLRDNGYNLNIPRYVDSSETAQ HHHCCCCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCH TWDLHATMLGGIPNCEIAELHNFWQAFPQLHGTLFTPKSAAYSELAIAKQDVNASISGHP HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCH QVLAFISAYNQAFNSFDDHLNTQLIQNWESVKRNQQEAVLSAKLFTRLAPIALIDKYQAY HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QFLNNQWQLISADLEMMQTEGFAAAKQVAPNIVIKKKNGQDTEVQDGWKGHILPFDLVQQ HHHCCCHHHHHHHHHHHHHCCHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHH TYLSDDLQALAAQETRLAEIASTLEEILESLSEEEKEQDTVKESKDGFSNAELSKAAKAF HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH LKEQKDSKVKFAEESYETKIIRASKLIDEEKALKKMVKDAAATLHSKTKTTIETLTDEQV HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH NNLLHLKWIAPLSTELAAMPNAVISQLTSQVQALADKYAVTYSQVANEIKTTEQELAEMM HCEEEEEEECCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GELTGNEFDMQGLVELTNLLKDE HHHCCCCCCHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 2784505 [H]