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The map label for this gene is yagA [C]

Identifier: 157372315

GI number: 157372315

Start: 4534928

End: 4535560

Strand: Direct

Name: yagA [C]

Synonym: Spro_4081

Alternate gene names: 157372315

Gene position: 4534928-4535560 (Clockwise)

Preceding gene: 157372314

Following gene: 157372316

Centisome position: 83.23

GC content: 54.03

Gene sequence:

>633_bases
ATGTTAATCACAAGCGCGTGTACCGCCTTTAATCATCTGAGCGGGCTGGGCGTAAAACGCAGACGTCGTCGTAAAGGGCT
GGCAACAGAACGTCTGCCGCTGCTCCGCCCGGCGGCGCCCAATCTGACCTGGTCGATGGATTTCGTCATGGACGCATTGG
CCACCGGTCGCAGGATAAAGTGCCTTACCTGCGTGGATGACTTCACGAAGGAATGCCTGACGGTCACTGTTGCCTTTGGG
ATTTCAGGCGTGCAGGTCACGCGCATTCTGGACAGTATTGCGCTGTTTCGCGGCTATCCGGCTACGATAAGAACTGACCA
GGGGCCGGAGTTTACCTGCAGAGCACTTGACCAGTGGGCTTATGAGCATGGCGTGGAGCTGCGGCTTATTCAGCCCGGTA
AGCCGACACAGAACGGATTTATTGAGAGTTTTAACGGACGCTTTCGCGATGAATGCCTTAATGAACACTGGTTCAGCGAC
GTCAGTCATGCCAGGATAACCATCAGTCAATGGCGTCAGGATTATAACGAGTGCCGTCCGCACTCCACGCTGAATTATCA
GACGCCGTCTGAATTTGCGGCGGGTTGGAGAAAGGGTAATTCTGATCGTGAAGGATCCGACATTACTAACTGA

Upstream 100 bases:

>100_bases
GCTGATACGTATTTATCAGGGCGCATCACTGAGCTGGCATTGGAGCGCAGGTGTTTTGGCTACCGCCGCATCTGGCAGTT
ACTGCGCCGTGAAGGGCTTC

Downstream 100 bases:

>100_bases
GCGTTGTATCTAATCCTGGGGGCAGGTCAGTTAAGCCCAGCAGCTAGCAAGAAGCTCTTATGAAACGTACAATCAAAACC
CTAAAATAGACTTTTTCGAA

Product: Integrase catalytic subunit

Products: NA

Alternate protein names: ORF1 [H]

Number of amino acids: Translated: 210; Mature: 210

Protein sequence:

>210_residues
MLITSACTAFNHLSGLGVKRRRRRKGLATERLPLLRPAAPNLTWSMDFVMDALATGRRIKCLTCVDDFTKECLTVTVAFG
ISGVQVTRILDSIALFRGYPATIRTDQGPEFTCRALDQWAYEHGVELRLIQPGKPTQNGFIESFNGRFRDECLNEHWFSD
VSHARITISQWRQDYNECRPHSTLNYQTPSEFAAGWRKGNSDREGSDITN

Sequences:

>Translated_210_residues
MLITSACTAFNHLSGLGVKRRRRRKGLATERLPLLRPAAPNLTWSMDFVMDALATGRRIKCLTCVDDFTKECLTVTVAFG
ISGVQVTRILDSIALFRGYPATIRTDQGPEFTCRALDQWAYEHGVELRLIQPGKPTQNGFIESFNGRFRDECLNEHWFSD
VSHARITISQWRQDYNECRPHSTLNYQTPSEFAAGWRKGNSDREGSDITN
>Mature_210_residues
MLITSACTAFNHLSGLGVKRRRRRKGLATERLPLLRPAAPNLTWSMDFVMDALATGRRIKCLTCVDDFTKECLTVTVAFG
ISGVQVTRILDSIALFRGYPATIRTDQGPEFTCRALDQWAYEHGVELRLIQPGKPTQNGFIESFNGRFRDECLNEHWFSD
VSHARITISQWRQDYNECRPHSTLNYQTPSEFAAGWRKGNSDREGSDITN

Specific function: Unknown

COG id: COG2801

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 integrase catalytic domain [H]

Homologues:

Organism=Escherichia coli, GI1786462, Length=156, Percent_Identity=28.8461538461538, Blast_Score=67, Evalue=1e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001584
- InterPro:   IPR012337 [H]

Pfam domain/function: PF00665 rve [H]

EC number: NA

Molecular weight: Translated: 23846; Mature: 23846

Theoretical pI: Translated: 8.50; Mature: 8.50

Prosite motif: PS50994 INTEGRASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.3 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
3.3 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLITSACTAFNHLSGLGVKRRRRRKGLATERLPLLRPAAPNLTWSMDFVMDALATGRRIK
CEECHHHHHHHHHHCCCHHHHHHHCCCCHHCCCCCCCCCCCCEEHHHHHHHHHHCCCCEE
CLTCVDDFTKECLTVTVAFGISGVQVTRILDSIALFRGYPATIRTDQGPEFTCRALDQWA
EEHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCEEECCCCCCHHHHHHHHHH
YEHGVELRLIQPGKPTQNGFIESFNGRFRDECLNEHWFSDVSHARITISQWRQDYNECRP
HHCCCEEEEECCCCCCCCCHHHHCCCHHHHHHHHHHHHCCCCHHEEEHHHHHHHHHHCCC
HSTLNYQTPSEFAAGWRKGNSDREGSDITN
CCCCCCCCCHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure
MLITSACTAFNHLSGLGVKRRRRRKGLATERLPLLRPAAPNLTWSMDFVMDALATGRRIK
CEECHHHHHHHHHHCCCHHHHHHHCCCCHHCCCCCCCCCCCCEEHHHHHHHHHHCCCCEE
CLTCVDDFTKECLTVTVAFGISGVQVTRILDSIALFRGYPATIRTDQGPEFTCRALDQWA
EEHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCEEECCCCCCHHHHHHHHHH
YEHGVELRLIQPGKPTQNGFIESFNGRFRDECLNEHWFSDVSHARITISQWRQDYNECRP
HHCCCEEEEECCCCCCCCCHHHHCCCHHHHHHHHHHHHCCCCHHEEEHHHHHHHHHHCCC
HSTLNYQTPSEFAAGWRKGNSDREGSDITN
CCCCCCCCCHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1718819 [H]