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The map label for this gene is yadE [H]

Identifier: 157372228

GI number: 157372228

Start: 4428834

End: 4430114

Strand: Reverse

Name: yadE [H]

Synonym: Spro_3994

Alternate gene names: 157372228

Gene position: 4430114-4428834 (Counterclockwise)

Preceding gene: 157372229

Following gene: 157372224

Centisome position: 81.3

GC content: 51.91

Gene sequence:

>1281_bases
ATGCGGTCTACACACAAGATAGCGGCTGGGTTACTCGGCATTCTATTATCCCTTGCCGCCCCGGCAAGCCTGGCAAATTT
GTTGTCGGAAGACAGTGCCGTTAAATCCGAATATATGGAAGCGCAACGCGACAGTGAGGTTTATTCGCTGATTGGCGAGC
ATGTCATTCCAGTCGGTGAAGTGAAGCAGGGGCAACTGATCCAGGTGTTCCCGGCGGATGCGGAATATTACGAGTTCAAA
TTCGGCCACGGCACGGGTTTTATCGATAAAGACGATGTGCGAGAGCTTAAAAAATCACGCAAGGTGAAAGACGATCTGGG
GGAGTTGAATAAACCGCTGACTAACCAGAACCTGATCACGCAGAAGGCGATCAACGTCTATACCGATGCGGATAACACCA
GCGATGTGTTTGGAGTACTGGAACAGAACCTGCGCTACCCGATTATCGGCAAGCTGAAAGATCGGCTCAACAACACCTGG
TATGAGGTCAATATTGGCGATCGCCTGGGTTATGTCAGTGAGCTGGACTGCGAGATTGACACCGGTATACCGATACTGAC
CTATCATCATCTGCTGAAAAACGAAGAGAACAAGCGCTTCCGCCATACCTCGACGACCACCTCTGACGTGGCGTTCAGTA
ACCAGATGACCTATCTGAAGCAGGCGGGCTACGACACCATTTCCCTGTATCAGTTGGAAGCCTACCTGAAAAACCAGATC
AATCTGCCGGGCAGGGCGGTGGTGCTGACATTTGATGACGGACTGAAATCGGTCTATCGCTACGCTTACCCGGTCTTGAA
GAATTACGGCTTCCGTGCCACGGCGTTTATTATTTCTTCACGCATCAAGCGTCACCCGCAGAAGTGGAACCCAGACTCGC
TGCAGTTTATGAGCATTTCCGAGCTGAAGCAGATTCAGGACGTGTTCGACGTGCAGTCGCATACCCATTTCCTGCATCGT
ACCGACGGTAATCGTCAACCGATCCTGCTCAGTCGTTCGCTGCACAATATTGAATTCGATTTTGAGCGCTCACGTCGCGC
GCTGTCGCAGTTTAATCCGCATGTGCTGTATGTCTCCTACCCATTTGGCGGCTACAATCAGCGGGCGATACAGGCTGCGA
AAGACGCCGGTTTTCATATGGCGGTGACCACGGTGCAGGGCAAGGTGAAACCGGGGGATAACCCCTATACGCTGAAACGG
CTGTATATCTTGCGCACCGACTCGATTCAGACCATGGCGGACAGAATAGCCAATAAGCCAGGAACGCTGGTGGTGCAATA
A

Upstream 100 bases:

>100_bases
CTGGCGCTCCACATTTTCTCCATTTTGTTATATACCCTATGAATTTCAAGTTGCGGCTGGAAAAGCGACGGGTATACGCA
CTCGTAAGCAGAACATAACC

Downstream 100 bases:

>100_bases
TCAGGAAGGAACGGGCGCCGGCAGCGCCCGTTTTTACTTTTATGCGACCTGAACCGGCACGGCTTTTGCCTTGCGCTGCA
GGTGGTTGTCACCCTCGAAG

Product: polysaccharide deacetylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 426; Mature: 426

Protein sequence:

>426_residues
MRSTHKIAAGLLGILLSLAAPASLANLLSEDSAVKSEYMEAQRDSEVYSLIGEHVIPVGEVKQGQLIQVFPADAEYYEFK
FGHGTGFIDKDDVRELKKSRKVKDDLGELNKPLTNQNLITQKAINVYTDADNTSDVFGVLEQNLRYPIIGKLKDRLNNTW
YEVNIGDRLGYVSELDCEIDTGIPILTYHHLLKNEENKRFRHTSTTTSDVAFSNQMTYLKQAGYDTISLYQLEAYLKNQI
NLPGRAVVLTFDDGLKSVYRYAYPVLKNYGFRATAFIISSRIKRHPQKWNPDSLQFMSISELKQIQDVFDVQSHTHFLHR
TDGNRQPILLSRSLHNIEFDFERSRRALSQFNPHVLYVSYPFGGYNQRAIQAAKDAGFHMAVTTVQGKVKPGDNPYTLKR
LYILRTDSIQTMADRIANKPGTLVVQ

Sequences:

>Translated_426_residues
MRSTHKIAAGLLGILLSLAAPASLANLLSEDSAVKSEYMEAQRDSEVYSLIGEHVIPVGEVKQGQLIQVFPADAEYYEFK
FGHGTGFIDKDDVRELKKSRKVKDDLGELNKPLTNQNLITQKAINVYTDADNTSDVFGVLEQNLRYPIIGKLKDRLNNTW
YEVNIGDRLGYVSELDCEIDTGIPILTYHHLLKNEENKRFRHTSTTTSDVAFSNQMTYLKQAGYDTISLYQLEAYLKNQI
NLPGRAVVLTFDDGLKSVYRYAYPVLKNYGFRATAFIISSRIKRHPQKWNPDSLQFMSISELKQIQDVFDVQSHTHFLHR
TDGNRQPILLSRSLHNIEFDFERSRRALSQFNPHVLYVSYPFGGYNQRAIQAAKDAGFHMAVTTVQGKVKPGDNPYTLKR
LYILRTDSIQTMADRIANKPGTLVVQ
>Mature_426_residues
MRSTHKIAAGLLGILLSLAAPASLANLLSEDSAVKSEYMEAQRDSEVYSLIGEHVIPVGEVKQGQLIQVFPADAEYYEFK
FGHGTGFIDKDDVRELKKSRKVKDDLGELNKPLTNQNLITQKAINVYTDADNTSDVFGVLEQNLRYPIIGKLKDRLNNTW
YEVNIGDRLGYVSELDCEIDTGIPILTYHHLLKNEENKRFRHTSTTTSDVAFSNQMTYLKQAGYDTISLYQLEAYLKNQI
NLPGRAVVLTFDDGLKSVYRYAYPVLKNYGFRATAFIISSRIKRHPQKWNPDSLQFMSISELKQIQDVFDVQSHTHFLHR
TDGNRQPILLSRSLHNIEFDFERSRRALSQFNPHVLYVSYPFGGYNQRAIQAAKDAGFHMAVTTVQGKVKPGDNPYTLKR
LYILRTDSIQTMADRIANKPGTLVVQ

Specific function: Unknown

COG id: COG0726

COG function: function code G; Predicted xylanase/chitin deacetylase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786322, Length=392, Percent_Identity=63.7755102040816, Blast_Score=543, Evalue=1e-156,
Organism=Escherichia coli, GI1787260, Length=265, Percent_Identity=23.3962264150943, Blast_Score=67, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011330
- InterPro:   IPR002509 [H]

Pfam domain/function: PF01522 Polysacc_deac_1 [H]

EC number: NA

Molecular weight: Translated: 48465; Mature: 48465

Theoretical pI: Translated: 8.90; Mature: 8.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRSTHKIAAGLLGILLSLAAPASLANLLSEDSAVKSEYMEAQRDSEVYSLIGEHVIPVGE
CCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
VKQGQLIQVFPADAEYYEFKFGHGTGFIDKDDVRELKKSRKVKDDLGELNKPLTNQNLIT
CCCCCEEEEECCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHH
QKAINVYTDADNTSDVFGVLEQNLRYPIIGKLKDRLNNTWYEVNIGDRLGYVSELDCEID
HHHHEEEECCCCCHHHHHHHHHCCCCCCHHHHHHHHCCCEEEEECCCCCCCCEECCCEEC
TGIPILTYHHLLKNEENKRFRHTSTTTSDVAFSNQMTYLKQAGYDTISLYQLEAYLKNQI
CCCHHHHHHHHHCCCCCCCEEECCCCCCHHEECHHHHHHHHCCCCEEEHHHHHHHHHHCC
NLPGRAVVLTFDDGLKSVYRYAYPVLKNYGFRATAFIISSRIKRHPQKWNPDSLQFMSIS
CCCCCEEEEEECHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEHH
ELKQIQDVFDVQSHTHFLHRTDGNRQPILLSRSLHNIEFDFERSRRALSQFNPHVLYVSY
HHHHHHHHHHHHHHHHEEECCCCCCCCEEEECCCCCCEECHHHHHHHHHHCCCEEEEEEE
PFGGYNQRAIQAAKDAGFHMAVTTVQGKVKPGDNPYTLKRLYILRTDSIQTMADRIANKP
CCCCCCHHHHHHHHCCCCEEEEEEEEEEECCCCCCEEEEEEEEEECCCHHHHHHHHCCCC
GTLVVQ
CEEEEC
>Mature Secondary Structure
MRSTHKIAAGLLGILLSLAAPASLANLLSEDSAVKSEYMEAQRDSEVYSLIGEHVIPVGE
CCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
VKQGQLIQVFPADAEYYEFKFGHGTGFIDKDDVRELKKSRKVKDDLGELNKPLTNQNLIT
CCCCCEEEEECCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHH
QKAINVYTDADNTSDVFGVLEQNLRYPIIGKLKDRLNNTWYEVNIGDRLGYVSELDCEID
HHHHEEEECCCCCHHHHHHHHHCCCCCCHHHHHHHHCCCEEEEECCCCCCCCEECCCEEC
TGIPILTYHHLLKNEENKRFRHTSTTTSDVAFSNQMTYLKQAGYDTISLYQLEAYLKNQI
CCCHHHHHHHHHCCCCCCCEEECCCCCCHHEECHHHHHHHHCCCCEEEHHHHHHHHHHCC
NLPGRAVVLTFDDGLKSVYRYAYPVLKNYGFRATAFIISSRIKRHPQKWNPDSLQFMSIS
CCCCCEEEEEECHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEHH
ELKQIQDVFDVQSHTHFLHRTDGNRQPILLSRSLHNIEFDFERSRRALSQFNPHVLYVSY
HHHHHHHHHHHHHHHHEEECCCCCCCCEEEECCCCCCEECHHHHHHHHHHCCCEEEEEEE
PFGGYNQRAIQAAKDAGFHMAVTTVQGKVKPGDNPYTLKRLYILRTDSIQTMADRIANKP
CCCCCCHHHHHHHHCCCCEEEEEEEEEEECCCCCCEEEEEEEEEECCCHHHHHHHHCCCC
GTLVVQ
CEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8202364; 9278503 [H]