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The map label for this gene is ydcR [H]

Identifier: 157371098

GI number: 157371098

Start: 3137603

End: 3139021

Strand: Reverse

Name: ydcR [H]

Synonym: Spro_2858

Alternate gene names: 157371098

Gene position: 3139021-3137603 (Counterclockwise)

Preceding gene: 157371102

Following gene: 157371097

Centisome position: 57.61

GC content: 61.45

Gene sequence:

>1419_bases
ATGACCAGATACGAACAGCTTGCACAACAGATTCGTGAACAGATCCAGAACCGGGTATGGCGGGCGGGGGACAAGCTGCC
GTCGCTGCGAGAGAGCGGTAAACGTGCCGGGCTGAGCCTGATGACGGTGGTGCAGTCGTATCAATTGCTGGAGAGTCAGG
GTTGGATCGTCGCACGGCCGCAATCCGGTTATTACGTGGCGGCGCGTCCGCAGCCATTGCCGCAGCCGGCGCACGGCGCA
AAGCTGTTGCTGAGCGAGCAGGTGGATATCAACACCTTCATTTTTGATGTGCTGCAGGCGTGCCAGGATCCGGATATTGT
GCCCTTTGGTTCGGCGTTTCCCGACGCCACCTTATTTGCCCAACCGAAGCTGGCGCGGGCGCTGAGCAGTGTGGCACGCA
AGTTTACGCCGCACAGCTCACTGGCCAATCTGCCGCCAGGCAATGAAGCACTGCGCCGCCACATCGCCCAGCGTTATGCG
CTGAGCGGTATGCAGGTGGCGCCGGACGAAATCGTGATCACCGCCGGGGCGATGGAATCATTAAGCCTCAGCCTGCAGGC
GGTGACCCAGCCGGGGGACTACGTGGCGATTGAATCACCGGCGTTTTATGGCGCGTTACAGGCACTGGAGCGGCTGCGTC
TGAAGGCGGTGGCGATTGCCACTCACCCGCAGGACGGTATTGATCTCGATGCGCTCGAGCAGGCGCTGGAGCAGTATCCG
ATCAAGGCCTGTTGGCTGATGACCCACTTCCAGAACCCGCTGGGGGCCAGCCTGTCGGACGACAACAAGCAGCGGCTGGT
GAGTTTGCTGCGTGAGCGGCAGATTTCCCTGATTGAGGACGACGTTTATGGCGAGCTGTATTTCAGCGCCGAGCGGCCGC
AGCCGGCCAAGGCGTGGGACAGCGGCGGGCAAGTCCTGCACTGTTCGTCGTTCTCCAAATGTCTGGCACCGGGTTTCCGC
GTCGGTTGGGTGGCGGCGGGGCGCTATGCGCAGCAAATCCAGCGTTTGCAGCTGATGAGCACGGTGTCCACCAGCGTGCC
GACCCAGTTGGCGATAGCCGACTATCTGCTGCACGGCGGCTACGATACTCACCTGCGGCGCCTGCGCCGTTTGCTGGCGC
AGCGCCAAAGCATGATGCGCCAGGCGATTGCCCACCATTTCCCGCCTACCGTCAAAGTCAGCCAGCCGGACGGCGGCTAT
TTCCTGTGGCTGGAACTGGATCCGGCGCTGTCGTCGATGGAACTCTACCAGCGCGCGTTAGCGCTGGGGGTGAGTATTGC
ACCGGGCAGGATGTTCACCACCGGTAACCATTTCAACCACTGCTTCCGCCTGAACGCCTCTTTTGACTGGAACGACAAGC
ATGAGGCGGCAATCAAAACCTTAGCCAAACTTATCCGGCAGCTCGAACCGGCAGGCTGA

Upstream 100 bases:

>100_bases
GGTAATTTTTCTATCGAAAGCTTGGCTCCAAGTTAAGCACGGAGTACATTAACTATAATAGTGACAGTTATTTCACTTTT
TCATATAACAGTTAGGGCCT

Downstream 100 bases:

>100_bases
ACAGCGCCAACGGCGGGGCATCGCAATAGAAAAATTCATAATGCTTTTTTTGGCAATGGAATGCCGGTTTCGTTGTTAGA
CAGCCCTCCGGCCGCCCATT

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 472; Mature: 471

Protein sequence:

>472_residues
MTRYEQLAQQIREQIQNRVWRAGDKLPSLRESGKRAGLSLMTVVQSYQLLESQGWIVARPQSGYYVAARPQPLPQPAHGA
KLLLSEQVDINTFIFDVLQACQDPDIVPFGSAFPDATLFAQPKLARALSSVARKFTPHSSLANLPPGNEALRRHIAQRYA
LSGMQVAPDEIVITAGAMESLSLSLQAVTQPGDYVAIESPAFYGALQALERLRLKAVAIATHPQDGIDLDALEQALEQYP
IKACWLMTHFQNPLGASLSDDNKQRLVSLLRERQISLIEDDVYGELYFSAERPQPAKAWDSGGQVLHCSSFSKCLAPGFR
VGWVAAGRYAQQIQRLQLMSTVSTSVPTQLAIADYLLHGGYDTHLRRLRRLLAQRQSMMRQAIAHHFPPTVKVSQPDGGY
FLWLELDPALSSMELYQRALALGVSIAPGRMFTTGNHFNHCFRLNASFDWNDKHEAAIKTLAKLIRQLEPAG

Sequences:

>Translated_472_residues
MTRYEQLAQQIREQIQNRVWRAGDKLPSLRESGKRAGLSLMTVVQSYQLLESQGWIVARPQSGYYVAARPQPLPQPAHGA
KLLLSEQVDINTFIFDVLQACQDPDIVPFGSAFPDATLFAQPKLARALSSVARKFTPHSSLANLPPGNEALRRHIAQRYA
LSGMQVAPDEIVITAGAMESLSLSLQAVTQPGDYVAIESPAFYGALQALERLRLKAVAIATHPQDGIDLDALEQALEQYP
IKACWLMTHFQNPLGASLSDDNKQRLVSLLRERQISLIEDDVYGELYFSAERPQPAKAWDSGGQVLHCSSFSKCLAPGFR
VGWVAAGRYAQQIQRLQLMSTVSTSVPTQLAIADYLLHGGYDTHLRRLRRLLAQRQSMMRQAIAHHFPPTVKVSQPDGGY
FLWLELDPALSSMELYQRALALGVSIAPGRMFTTGNHFNHCFRLNASFDWNDKHEAAIKTLAKLIRQLEPAG
>Mature_471_residues
TRYEQLAQQIREQIQNRVWRAGDKLPSLRESGKRAGLSLMTVVQSYQLLESQGWIVARPQSGYYVAARPQPLPQPAHGAK
LLLSEQVDINTFIFDVLQACQDPDIVPFGSAFPDATLFAQPKLARALSSVARKFTPHSSLANLPPGNEALRRHIAQRYAL
SGMQVAPDEIVITAGAMESLSLSLQAVTQPGDYVAIESPAFYGALQALERLRLKAVAIATHPQDGIDLDALEQALEQYPI
KACWLMTHFQNPLGASLSDDNKQRLVSLLRERQISLIEDDVYGELYFSAERPQPAKAWDSGGQVLHCSSFSKCLAPGFRV
GWVAAGRYAQQIQRLQLMSTVSTSVPTQLAIADYLLHGGYDTHLRRLRRLLAQRQSMMRQAIAHHFPPTVKVSQPDGGYF
LWLELDPALSSMELYQRALALGVSIAPGRMFTTGNHFNHCFRLNASFDWNDKHEAAIKTLAKLIRQLEPAG

Specific function: Unknown

COG id: COG1167

COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Homo sapiens, GI7705897, Length=319, Percent_Identity=26.9592476489028, Blast_Score=105, Evalue=1e-22,
Organism=Homo sapiens, GI33469970, Length=319, Percent_Identity=26.9592476489028, Blast_Score=105, Evalue=1e-22,
Organism=Homo sapiens, GI4507369, Length=176, Percent_Identity=23.8636363636364, Blast_Score=76, Evalue=8e-14,
Organism=Escherichia coli, GI1787710, Length=468, Percent_Identity=58.3333333333333, Blast_Score=558, Evalue=1e-160,
Organism=Escherichia coli, GI1790797, Length=466, Percent_Identity=36.6952789699571, Blast_Score=320, Evalue=1e-88,
Organism=Saccharomyces cerevisiae, GI6321000, Length=297, Percent_Identity=26.2626262626263, Blast_Score=94, Evalue=7e-20,
Organism=Saccharomyces cerevisiae, GI6321929, Length=258, Percent_Identity=21.3178294573643, Blast_Score=70, Evalue=1e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR000524
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00155 Aminotran_1_2; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 52449; Mature: 52317

Theoretical pI: Translated: 8.65; Mature: 8.65

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRYEQLAQQIREQIQNRVWRAGDKLPSLRESGKRAGLSLMTVVQSYQLLESQGWIVARP
CCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCEEECC
QSGYYVAARPQPLPQPAHGAKLLLSEQVDINTFIFDVLQACQDPDIVPFGSAFPDATLFA
CCCEEEEECCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEC
QPKLARALSSVARKFTPHSSLANLPPGNEALRRHIAQRYALSGMQVAPDEIVITAGAMES
CHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEECCCCEEEECCCHHH
LSLSLQAVTQPGDYVAIESPAFYGALQALERLRLKAVAIATHPQDGIDLDALEQALEQYP
HHEEEEEECCCCCEEEECCCHHHHHHHHHHHHHHHHEEEEECCCCCCCHHHHHHHHHHCC
IKACWLMTHFQNPLGASLSDDNKQRLVSLLRERQISLIEDDVYGELYFSAERPQPAKAWD
HHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHC
SGGQVLHCSSFSKCLAPGFRVGWVAAGRYAQQIQRLQLMSTVSTSVPTQLAIADYLLHGG
CCCCEEEECCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCC
YDTHLRRLRRLLAQRQSMMRQAIAHHFPPTVKVSQPDGGYFLWLELDPALSSMELYQRAL
CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCEEEEEEECCCHHHHHHHHHHH
ALGVSIAPGRMFTTGNHFNHCFRLNASFDWNDKHEAAIKTLAKLIRQLEPAG
HHCCEECCCCEEECCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
TRYEQLAQQIREQIQNRVWRAGDKLPSLRESGKRAGLSLMTVVQSYQLLESQGWIVARP
CHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCEEECC
QSGYYVAARPQPLPQPAHGAKLLLSEQVDINTFIFDVLQACQDPDIVPFGSAFPDATLFA
CCCEEEEECCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEC
QPKLARALSSVARKFTPHSSLANLPPGNEALRRHIAQRYALSGMQVAPDEIVITAGAMES
CHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEECCCCEEEECCCHHH
LSLSLQAVTQPGDYVAIESPAFYGALQALERLRLKAVAIATHPQDGIDLDALEQALEQYP
HHEEEEEECCCCCEEEECCCHHHHHHHHHHHHHHHHEEEEECCCCCCCHHHHHHHHHHCC
IKACWLMTHFQNPLGASLSDDNKQRLVSLLRERQISLIEDDVYGELYFSAERPQPAKAWD
HHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHC
SGGQVLHCSSFSKCLAPGFRVGWVAAGRYAQQIQRLQLMSTVSTSVPTQLAIADYLLHGG
CCCCEEEECCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCC
YDTHLRRLRRLLAQRQSMMRQAIAHHFPPTVKVSQPDGGYFLWLELDPALSSMELYQRAL
CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCEEEEEEECCCHHHHHHHHHHH
ALGVSIAPGRMFTTGNHFNHCFRLNASFDWNDKHEAAIKTLAKLIRQLEPAG
HHCCEECCCCEEECCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]