Click here to switch to the map view.

The map label for this gene is oppB [H]

Identifier: 157370940

GI number: 157370940

Start: 2972325

End: 2973245

Strand: Reverse

Name: oppB [H]

Synonym: Spro_2700

Alternate gene names: 157370940

Gene position: 2973245-2972325 (Counterclockwise)

Preceding gene: 157370941

Following gene: 157370939

Centisome position: 54.57

GC content: 51.79

Gene sequence:

>921_bases
ATGCTTAAATTTATATTTCGTCGCTTGTTAGAAGCGATCCCGACACTATTTATCCTTATTACCATCTCATTCTTTATGAT
GCGTCTGGCTCCCGGTAGCCCATTTACCGGTGAGCGCGCGTTGCCACCGGAAGTCATGGCTAATATCGAGGCCAAATATC
ATTTGAACGATCCGATCTGGAAGCAGTACGGCCATTATTTGGCGCAACTGTCGCAAGGCGATTTCGGCCCGTCGTTCAAA
TACAAGGATTACTCGGTTAACGATCTGGTCGCCGCTTCATTCCCGGTATCCGCCAAGCTTGGCCTTGCCGCATTCTTGTT
GGCGGTAGTGCTGGGGGTTAGCGCCGGGGTAGTGGCTGCACTGAATCAAAATACCAAATGGGATTACACGGTGATGGGCT
TTGCCATGACCGGGGTAGTGATACCCAGTTTCGTGGTGGCGCCGTTACTGGTGTTGATTTTCGCCATCACGCTGAAATGG
TTACCAGGCGGCGGTTGGAACGGTGGCGCACCGAAGTTTATTATCTTGCCGATGGTGGCGTTGTCACTGGCTTATATTGC
CAGTATCGCCCGTATTACGCGTGGCTCGATGATTGAAGTGCTGCACTCAAACTTTATCCGCACCGCCCGTGCCAAAGGGT
TGCCGATGCGTCGCATCATTTTCCGCCATGCGCTCAAACCGGCGTTATTGCCCGTGCTTTCCTATATGGGCCCGGCGTTT
GTCGGCATCATCACCGGTTCTATGGTGATCGAAACCATCTACGGCCTGCCGGGTATTGGCCAGCTGTTTGTTAATGGTGC
GCTGAACCGCGATTATTCTTTGGTATTGAGCCTGACCATTCTGGTGGGTGGCCTGACCATTTTGTTTAACGCGATCGTCG
ACGTGCTGTACGCCGTTATCGATCCAAAAATCCGTTATTAA

Upstream 100 bases:

>100_bases
ACATCATCAAGCATTGATACGGTAAGTGCCGGCGGTGTAAACCGCCGGCCCATGTTGAGAATAATAAGCCGTTATCAGGC
TGCAGCACAGGGTTAGGGCA

Downstream 100 bases:

>100_bases
GCTGGAGCACGCAAATGATGTTGACGAAAAAGAACAGCGAGGCTCTGGAGAACTTCAGCGAAAAGCTTGAAGTGGAAGGG
CGCAGCCTGTGGCAGGATGC

Product: oligopeptide transporter permease

Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 306; Mature: 306

Protein sequence:

>306_residues
MLKFIFRRLLEAIPTLFILITISFFMMRLAPGSPFTGERALPPEVMANIEAKYHLNDPIWKQYGHYLAQLSQGDFGPSFK
YKDYSVNDLVAASFPVSAKLGLAAFLLAVVLGVSAGVVAALNQNTKWDYTVMGFAMTGVVIPSFVVAPLLVLIFAITLKW
LPGGGWNGGAPKFIILPMVALSLAYIASIARITRGSMIEVLHSNFIRTARAKGLPMRRIIFRHALKPALLPVLSYMGPAF
VGIITGSMVIETIYGLPGIGQLFVNGALNRDYSLVLSLTILVGGLTILFNAIVDVLYAVIDPKIRY

Sequences:

>Translated_306_residues
MLKFIFRRLLEAIPTLFILITISFFMMRLAPGSPFTGERALPPEVMANIEAKYHLNDPIWKQYGHYLAQLSQGDFGPSFK
YKDYSVNDLVAASFPVSAKLGLAAFLLAVVLGVSAGVVAALNQNTKWDYTVMGFAMTGVVIPSFVVAPLLVLIFAITLKW
LPGGGWNGGAPKFIILPMVALSLAYIASIARITRGSMIEVLHSNFIRTARAKGLPMRRIIFRHALKPALLPVLSYMGPAF
VGIITGSMVIETIYGLPGIGQLFVNGALNRDYSLVLSLTILVGGLTILFNAIVDVLYAVIDPKIRY
>Mature_306_residues
MLKFIFRRLLEAIPTLFILITISFFMMRLAPGSPFTGERALPPEVMANIEAKYHLNDPIWKQYGHYLAQLSQGDFGPSFK
YKDYSVNDLVAASFPVSAKLGLAAFLLAVVLGVSAGVVAALNQNTKWDYTVMGFAMTGVVIPSFVVAPLLVLIFAITLKW
LPGGGWNGGAPKFIILPMVALSLAYIASIARITRGSMIEVLHSNFIRTARAKGLPMRRIIFRHALKPALLPVLSYMGPAF
VGIITGSMVIETIYGLPGIGQLFVNGALNRDYSLVLSLTILVGGLTILFNAIVDVLYAVIDPKIRY

Specific function: Part of the binding-protein-dependent transport system for oligopeptides; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0601

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787497, Length=306, Percent_Identity=92.156862745098, Blast_Score=560, Evalue=1e-161,
Organism=Escherichia coli, GI1787053, Length=309, Percent_Identity=35.9223300970874, Blast_Score=196, Evalue=2e-51,
Organism=Escherichia coli, GI1789965, Length=338, Percent_Identity=33.7278106508876, Blast_Score=191, Evalue=4e-50,
Organism=Escherichia coli, GI1789888, Length=310, Percent_Identity=34.1935483870968, Blast_Score=170, Evalue=9e-44,
Organism=Escherichia coli, GI1788504, Length=362, Percent_Identity=27.6243093922652, Blast_Score=140, Evalue=1e-34,
Organism=Escherichia coli, GI1787550, Length=273, Percent_Identity=28.2051282051282, Blast_Score=122, Evalue=4e-29,
Organism=Escherichia coli, GI1787761, Length=316, Percent_Identity=30.6962025316456, Blast_Score=117, Evalue=9e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 33380; Mature: 33380

Theoretical pI: Translated: 10.27; Mature: 10.27

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKFIFRRLLEAIPTLFILITISFFMMRLAPGSPFTGERALPPEVMANIEAKYHLNDPIW
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHCCCCEEECCCHHH
KQYGHYLAQLSQGDFGPSFKYKDYSVNDLVAASFPVSAKLGLAAFLLAVVLGVSAGVVAA
HHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
LNQNTKWDYTVMGFAMTGVVIPSFVVAPLLVLIFAITLKWLPGGGWNGGAPKFIILPMVA
HCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHH
LSLAYIASIARITRGSMIEVLHSNFIRTARAKGLPMRRIIFRHALKPALLPVLSYMGPAF
HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
VGIITGSMVIETIYGLPGIGQLFVNGALNRDYSLVLSLTILVGGLTILFNAIVDVLYAVI
HHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DPKIRY
CCCCCC
>Mature Secondary Structure
MLKFIFRRLLEAIPTLFILITISFFMMRLAPGSPFTGERALPPEVMANIEAKYHLNDPIW
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHCCCCEEECCCHHH
KQYGHYLAQLSQGDFGPSFKYKDYSVNDLVAASFPVSAKLGLAAFLLAVVLGVSAGVVAA
HHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
LNQNTKWDYTVMGFAMTGVVIPSFVVAPLLVLIFAITLKWLPGGGWNGGAPKFIILPMVA
HCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHH
LSLAYIASIARITRGSMIEVLHSNFIRTARAKGLPMRRIIFRHALKPALLPVLSYMGPAF
HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
VGIITGSMVIETIYGLPGIGQLFVNGALNRDYSLVLSLTILVGGLTILFNAIVDVLYAVI
HHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DPKIRY
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; oligopeptides [Periplasm]; H2O [C]

Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]