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The map label for this gene is ybfI [H]

Identifier: 157370780

GI number: 157370780

Start: 2795395

End: 2796222

Strand: Reverse

Name: ybfI [H]

Synonym: Spro_2540

Alternate gene names: 157370780

Gene position: 2796222-2795395 (Counterclockwise)

Preceding gene: 157370782

Following gene: 157370779

Centisome position: 51.32

GC content: 57.73

Gene sequence:

>828_bases
GTGCAGGGTGTTCCAGAGCAGTTTCCCTTTGAAAAAGACAGTGCGCAGTTCCGGCAGTTAGTGCAGGTGCCGGGCGTAGA
GCTTTATCACGCCCATATTGAGCGCTATGCCTTTGAGCCGCACACCCATAATGCTTTTGCCATCGGTACCGTCGATTTTG
GTGCCGAGCGTTTCCGCTATCGTGGCGCGCAGCACCGGGCTGCGCCGGGTTCACTGGTGTTGATGAACCCGGATGAGCTG
CATACCGGTGAAGCAGAAACCCCAGGTGGCTGGAACTACCGCATGCTTTATCTGGAACCGGATACGCTGGAGTTGCTGTC
TGGTGAACAGGGATTCTGGTTCACCGATGCGGTGCGCCAGGACTTGCAGGCGGCACAGCAATTGTCTGCCACGTTGGCCG
CACTGTGGCAGGCCAGCGATCCGCTGACCATTGACCACTTGCTGGCGCAGGTGGTCGACATTTTCCGCCCGCATATTCAA
GTGGCTCGCCCGTTAAAGGCCGAAGCGGCGCACCGTTTTGATATCGTCAAAAGTTACCTGCAGGATAACTTCTCTGCCGT
AATTACTCTCGATCAACTGGCGGCACTGGTTTCCCTCAGCCCTTATCACTTTCTGCGTAAGTTCAAAGCCCAATACCATG
CTTCCCCCCAGCAGATGCTGATGGCGATCCGCCTGTCGCAGGCCAAGCAGATGCTGGGGCGCGGTATGCCTGCGGCACAG
GTGGCGGTGGCGGCGGGGTTAACCGATCAGGCGCATTTGACCCGCGCTTTCGCTAACCGTTACGGTGTCACGCCAGTGCG
TTATCAAAAACAGGTTACGGCCCGGTGA

Upstream 100 bases:

>100_bases
GAATGAACCGCAGCGTCCAGCGCACCGCGTGCGCCACTACTCAAACCACAACGCTTTGACTATCATACAGCCAGCAATGA
CATTGAAGCAGGGTGGTACG

Downstream 100 bases:

>100_bases
AAACGGGTGTTACGATTGCAGTTGATATAAATATTAATAAAAATTATTATCATTTGCGCGTTTTTGACCCAAAAGAAATA
AACAATAATTAAGAACAACC

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 275; Mature: 275

Protein sequence:

>275_residues
MQGVPEQFPFEKDSAQFRQLVQVPGVELYHAHIERYAFEPHTHNAFAIGTVDFGAERFRYRGAQHRAAPGSLVLMNPDEL
HTGEAETPGGWNYRMLYLEPDTLELLSGEQGFWFTDAVRQDLQAAQQLSATLAALWQASDPLTIDHLLAQVVDIFRPHIQ
VARPLKAEAAHRFDIVKSYLQDNFSAVITLDQLAALVSLSPYHFLRKFKAQYHASPQQMLMAIRLSQAKQMLGRGMPAAQ
VAVAAGLTDQAHLTRAFANRYGVTPVRYQKQVTAR

Sequences:

>Translated_275_residues
MQGVPEQFPFEKDSAQFRQLVQVPGVELYHAHIERYAFEPHTHNAFAIGTVDFGAERFRYRGAQHRAAPGSLVLMNPDEL
HTGEAETPGGWNYRMLYLEPDTLELLSGEQGFWFTDAVRQDLQAAQQLSATLAALWQASDPLTIDHLLAQVVDIFRPHIQ
VARPLKAEAAHRFDIVKSYLQDNFSAVITLDQLAALVSLSPYHFLRKFKAQYHASPQQMLMAIRLSQAKQMLGRGMPAAQ
VAVAAGLTDQAHLTRAFANRYGVTPVRYQKQVTAR
>Mature_275_residues
MQGVPEQFPFEKDSAQFRQLVQVPGVELYHAHIERYAFEPHTHNAFAIGTVDFGAERFRYRGAQHRAAPGSLVLMNPDEL
HTGEAETPGGWNYRMLYLEPDTLELLSGEQGFWFTDAVRQDLQAAQQLSATLAALWQASDPLTIDHLLAQVVDIFRPHIQ
VARPLKAEAAHRFDIVKSYLQDNFSAVITLDQLAALVSLSPYHFLRKFKAQYHASPQQMLMAIRLSQAKQMLGRGMPAAQ
VAVAAGLTDQAHLTRAFANRYGVTPVRYQKQVTAR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018060 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 30895; Mature: 30895

Theoretical pI: Translated: 7.50; Mature: 7.50

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQGVPEQFPFEKDSAQFRQLVQVPGVELYHAHIERYAFEPHTHNAFAIGTVDFGAERFRY
CCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCEEEEEEEHHHHHHHHH
RGAQHRAAPGSLVLMNPDELHTGEAETPGGWNYRMLYLEPDTLELLSGEQGFWFTDAVRQ
CCCCCCCCCCCEEEECCHHCCCCCCCCCCCCCEEEEEECCCHHHHHCCCCCCEEHHHHHH
DLQAAQQLSATLAALWQASDPLTIDHLLAQVVDIFRPHIQVARPLKAEAAHRFDIVKSYL
HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
QDNFSAVITLDQLAALVSLSPYHFLRKFKAQYHASPQQMLMAIRLSQAKQMLGRGMPAAQ
HCCCCEEEEHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCHHH
VAVAAGLTDQAHLTRAFANRYGVTPVRYQKQVTAR
HHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHCCC
>Mature Secondary Structure
MQGVPEQFPFEKDSAQFRQLVQVPGVELYHAHIERYAFEPHTHNAFAIGTVDFGAERFRY
CCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCEEEEEEEHHHHHHHHH
RGAQHRAAPGSLVLMNPDELHTGEAETPGGWNYRMLYLEPDTLELLSGEQGFWFTDAVRQ
CCCCCCCCCCCEEEECCHHCCCCCCCCCCCCCEEEEEECCCHHHHHCCCCCCEEHHHHHH
DLQAAQQLSATLAALWQASDPLTIDHLLAQVVDIFRPHIQVARPLKAEAAHRFDIVKSYL
HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
QDNFSAVITLDQLAALVSLSPYHFLRKFKAQYHASPQQMLMAIRLSQAKQMLGRGMPAAQ
HCCCCEEEEHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCHHH
VAVAAGLTDQAHLTRAFANRYGVTPVRYQKQVTAR
HHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]