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The map label for this gene is yhcD [H]

Identifier: 157370646

GI number: 157370646

Start: 2627530

End: 2629968

Strand: Reverse

Name: yhcD [H]

Synonym: Spro_2406

Alternate gene names: 157370646

Gene position: 2629968-2627530 (Counterclockwise)

Preceding gene: 157370647

Following gene: 157370645

Centisome position: 48.27

GC content: 63.88

Gene sequence:

>2439_bases
GTGAGGAGTCTGTTCTGCTTTCCCCCCGCTCGCCCGCTGAGCTGGCAGGCACTGGCGATAAGAGTAGCCCTGGCACCTCT
GTTCCTGGTGTCGCCGGCCAACGCAGAGGGTTCCCCTTCTCGGCCGGAAGAAACCCTGTTTGACCCGGTCATGCTGCAGT
CCCGGGGTATCGACCGCACCGTGGCGGACAGTTTCCGTCACGGGCCGCGCTTTTTACCCGGCGAAAATGCGCTGATGCTA
AACGTTAACGGACGCGGCCGGGGGCGCATCACCGCCCGCTTTAACGAGCAGGGGCAACTTTGTGCCGACGCCGCCTTCCA
AAAACAGGCCGGTCTGGAGACGCCGCCGGGCTTTACCGGCCGGGAACCCTGTTTTGACCTGCGCAGCGCCTGGCCACAAA
CCGAACTGCATCTGGACCCCGCTGAACGTCGGGCAGATCTGGTGGTACCTGCGCAGGCGGTTTCCGCCCCTGGCTCGGCC
GAGGGCAATTGGCAGCACGGCGGCATCGCGGGCCTGTTCAACTACGATGCGCAATACATGGACAGCGCCGGGAATAGCGG
TGGGGTCAGTTTTGTCCAACTGGACAGTGAGGCCGGGTTCAACGCCGGGGACTGGATCGTGCGTAGCCGCCAGACCCTCT
CGCGCTTTGATGGCGAAGATAGCCTGCAACATCAGGCTGCCTATGCCCAGCGCAGCTTTGCCGGTATTAAGAAGGTGTTT
CAGACCGGGCAAATTAGCCTGGGCAACTCGCTGTTCGGTACCGGGCAGGTGATTGGTGCCCAGCTGTTTCCGGAAACCGC
CCTGACCGGCAATTCGGGCGGAGCCGGTCTGGTGGAAGGGATTGCCGACACTCAGTCGGTGGTGGAAGTCCGCCAGTCCG
GCGTGCTGCTTTACAGCACCACCGTCCCCGCCGGGCCATTCCGCCTGCAAGGGTTCTCGCTGCTCAATACCCGTAGCGAT
CTGGCGGTCAGCCTGAGCGGCAGCAACGGCGAAAAACGCCAGTTTACCGTCCCGGCCAGCGCACTGCTGCTCAACGGCAA
CAGCGTCGCACCCGGTCTGTCCGTCGGCGTGGGCAAGATGGATCAACAGGGCAGCAGCGAAGCGCCCTGGCTGGGCACCC
TTGCCAGCGGCTGGGCACTGACGCCGCGCACCACGCTTAACACCGGCCTGCTGGTTTCGGTGCCGTACCGGGCGGTGGCA
GCAGCAGTGGACAACCAGCTTCCCGGCGCGGGTCAACTCTCATTGCAGAGCACCGTGGCGCAGGATGAGCGCCATAACAA
CACCGGTACGCTGGTTTCGGTTTCGCTCGGTTATCCGCTGACGGAACGGCTGGGGGTCAGCCTCAACAGCCGTCAACAGA
CCCGTCAATACCGGGAATTGAGCGATGCCTTGCAGCGGGACACTCAAGATAGTCAGGGTCGTTCCCGCAGCCAGTACGGT
GCGGGTATCAGTTGGGGAATGCCGTCAGTCGGTAATTTCGCCCTCTCTTGGGCGCAGGGCACCACCTTTGGCGGCGACGA
CACCCGCTACTTGCGCGCCGGCTGGAGCGCTCAGATTGCTCAGGCCTATGTCGGACTAAACCTGGAACGCAATACCGGTA
GCGGCGACAACGGCAATGAGGATCGCGCCTACCTGACCGTCAGTATCCCGTTCGGCGCACGCAGCCTCAGCAGTTATATC
AATACGGCCCGTCACAACAGCCGTGCCGGGGTGCGCTACAGCGACCGCAGCAGCCAGGACCGGGGCTGGAGCTTATCTAC
CGAACATGATACCGGCAGCAGCCGAACCAGCGGTACCGGCACCCTGGACTGGGTCACGCCGGTCAGCCAGCTCAGCGGCA
GCCTGACCCGTGACTCGAACGACTACACCAGTTGGAATGTCCGGGCATCCGGCGGCGTGGTGGCACACGGCGGCGGGGTC
ACGCTCACGCCGTACTCCGTCGGGGACACTTTTGCCATTGCCCGGGTCGGTCAGGAAGGCGGGATCCGGCTGGAAACACC
GGCAGGCCCGACCTGGACCGATGCCCGGGGTTACGCGGTATTGCCGTCGTTGAGTGGCTATCACCGCTCAACCGTTCAGG
TCGACACGCGCAGCCTGCCGAAAAATGTGGATATCAGCAACGCCTGGCTGGAGACGGAACTGGCGCGCGGCGCGGTGGGA
CGGATGGATTTTGACGTGGTGCGTACCCGCCGGGTCCTGGTCAACGTTCAGGATGCCCAGGGCGCTCCATTGCCCCACGG
CGCGGCCGTTTTCAATACCGAGGGGCAATTTGTCACCGTGGTCGGTTCGGCCGGGGCGGTATTCCTGCCGGACGCGGCAC
CGGGAATGCAACTGGAGGTGCAGAATGCCGGACGGCCACTGTGTTCGCTGACGCTCTCTCTGCCGGAACAGGCTGACAGC
AGCGGTTTATATGAAACCAGCGCGGCAGTTTGCCGCTGA

Upstream 100 bases:

>100_bases
GGTACGGAGACGCAGGTGCGCATTGCCCCGGCCACCACCTGGGGGTTCAGCGTCGCCCATTATGATGCGCCTCTGACACC
GTTGCCGTGAGGGGAATACC

Downstream 100 bases:

>100_bases
ACAAGGAGTGTGAAATGAAAAGATTCATGGCGCTGGCGGGGCTGCTGGCCAGCCTGACGGCGCAAAGTGCCGAGCTGGAA
CCTGCGCAACTCATCCCGCA

Product: fimbrial biogenesis outer membrane usher protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 812; Mature: 812

Protein sequence:

>812_residues
MRSLFCFPPARPLSWQALAIRVALAPLFLVSPANAEGSPSRPEETLFDPVMLQSRGIDRTVADSFRHGPRFLPGENALML
NVNGRGRGRITARFNEQGQLCADAAFQKQAGLETPPGFTGREPCFDLRSAWPQTELHLDPAERRADLVVPAQAVSAPGSA
EGNWQHGGIAGLFNYDAQYMDSAGNSGGVSFVQLDSEAGFNAGDWIVRSRQTLSRFDGEDSLQHQAAYAQRSFAGIKKVF
QTGQISLGNSLFGTGQVIGAQLFPETALTGNSGGAGLVEGIADTQSVVEVRQSGVLLYSTTVPAGPFRLQGFSLLNTRSD
LAVSLSGSNGEKRQFTVPASALLLNGNSVAPGLSVGVGKMDQQGSSEAPWLGTLASGWALTPRTTLNTGLLVSVPYRAVA
AAVDNQLPGAGQLSLQSTVAQDERHNNTGTLVSVSLGYPLTERLGVSLNSRQQTRQYRELSDALQRDTQDSQGRSRSQYG
AGISWGMPSVGNFALSWAQGTTFGGDDTRYLRAGWSAQIAQAYVGLNLERNTGSGDNGNEDRAYLTVSIPFGARSLSSYI
NTARHNSRAGVRYSDRSSQDRGWSLSTEHDTGSSRTSGTGTLDWVTPVSQLSGSLTRDSNDYTSWNVRASGGVVAHGGGV
TLTPYSVGDTFAIARVGQEGGIRLETPAGPTWTDARGYAVLPSLSGYHRSTVQVDTRSLPKNVDISNAWLETELARGAVG
RMDFDVVRTRRVLVNVQDAQGAPLPHGAAVFNTEGQFVTVVGSAGAVFLPDAAPGMQLEVQNAGRPLCSLTLSLPEQADS
SGLYETSAAVCR

Sequences:

>Translated_812_residues
MRSLFCFPPARPLSWQALAIRVALAPLFLVSPANAEGSPSRPEETLFDPVMLQSRGIDRTVADSFRHGPRFLPGENALML
NVNGRGRGRITARFNEQGQLCADAAFQKQAGLETPPGFTGREPCFDLRSAWPQTELHLDPAERRADLVVPAQAVSAPGSA
EGNWQHGGIAGLFNYDAQYMDSAGNSGGVSFVQLDSEAGFNAGDWIVRSRQTLSRFDGEDSLQHQAAYAQRSFAGIKKVF
QTGQISLGNSLFGTGQVIGAQLFPETALTGNSGGAGLVEGIADTQSVVEVRQSGVLLYSTTVPAGPFRLQGFSLLNTRSD
LAVSLSGSNGEKRQFTVPASALLLNGNSVAPGLSVGVGKMDQQGSSEAPWLGTLASGWALTPRTTLNTGLLVSVPYRAVA
AAVDNQLPGAGQLSLQSTVAQDERHNNTGTLVSVSLGYPLTERLGVSLNSRQQTRQYRELSDALQRDTQDSQGRSRSQYG
AGISWGMPSVGNFALSWAQGTTFGGDDTRYLRAGWSAQIAQAYVGLNLERNTGSGDNGNEDRAYLTVSIPFGARSLSSYI
NTARHNSRAGVRYSDRSSQDRGWSLSTEHDTGSSRTSGTGTLDWVTPVSQLSGSLTRDSNDYTSWNVRASGGVVAHGGGV
TLTPYSVGDTFAIARVGQEGGIRLETPAGPTWTDARGYAVLPSLSGYHRSTVQVDTRSLPKNVDISNAWLETELARGAVG
RMDFDVVRTRRVLVNVQDAQGAPLPHGAAVFNTEGQFVTVVGSAGAVFLPDAAPGMQLEVQNAGRPLCSLTLSLPEQADS
SGLYETSAAVCR
>Mature_812_residues
MRSLFCFPPARPLSWQALAIRVALAPLFLVSPANAEGSPSRPEETLFDPVMLQSRGIDRTVADSFRHGPRFLPGENALML
NVNGRGRGRITARFNEQGQLCADAAFQKQAGLETPPGFTGREPCFDLRSAWPQTELHLDPAERRADLVVPAQAVSAPGSA
EGNWQHGGIAGLFNYDAQYMDSAGNSGGVSFVQLDSEAGFNAGDWIVRSRQTLSRFDGEDSLQHQAAYAQRSFAGIKKVF
QTGQISLGNSLFGTGQVIGAQLFPETALTGNSGGAGLVEGIADTQSVVEVRQSGVLLYSTTVPAGPFRLQGFSLLNTRSD
LAVSLSGSNGEKRQFTVPASALLLNGNSVAPGLSVGVGKMDQQGSSEAPWLGTLASGWALTPRTTLNTGLLVSVPYRAVA
AAVDNQLPGAGQLSLQSTVAQDERHNNTGTLVSVSLGYPLTERLGVSLNSRQQTRQYRELSDALQRDTQDSQGRSRSQYG
AGISWGMPSVGNFALSWAQGTTFGGDDTRYLRAGWSAQIAQAYVGLNLERNTGSGDNGNEDRAYLTVSIPFGARSLSSYI
NTARHNSRAGVRYSDRSSQDRGWSLSTEHDTGSSRTSGTGTLDWVTPVSQLSGSLTRDSNDYTSWNVRASGGVVAHGGGV
TLTPYSVGDTFAIARVGQEGGIRLETPAGPTWTDARGYAVLPSLSGYHRSTVQVDTRSLPKNVDISNAWLETELARGAVG
RMDFDVVRTRRVLVNVQDAQGAPLPHGAAVFNTEGQFVTVVGSAGAVFLPDAAPGMQLEVQNAGRPLCSLTLSLPEQADS
SGLYETSAAVCR

Specific function: Involved in the export and assembly of a fimbrial subunit across the outer membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fimbrial export usher family [H]

Homologues:

Organism=Escherichia coli, GI1789610, Length=804, Percent_Identity=32.5870646766169, Blast_Score=424, Evalue=1e-119,
Organism=Escherichia coli, GI1789533, Length=835, Percent_Identity=26.9461077844311, Blast_Score=179, Evalue=6e-46,
Organism=Escherichia coli, GI1790772, Length=893, Percent_Identity=25.4199328107503, Blast_Score=141, Evalue=2e-34,
Organism=Escherichia coli, GI1786744, Length=747, Percent_Identity=24.0963855421687, Blast_Score=140, Evalue=5e-34,
Organism=Escherichia coli, GI1786332, Length=714, Percent_Identity=23.8095238095238, Blast_Score=133, Evalue=4e-32,
Organism=Escherichia coli, GI1787172, Length=852, Percent_Identity=24.4131455399061, Blast_Score=120, Evalue=3e-28,
Organism=Escherichia coli, GI1788427, Length=834, Percent_Identity=21.9424460431655, Blast_Score=116, Evalue=7e-27,
Organism=Escherichia coli, GI87081778, Length=726, Percent_Identity=22.7272727272727, Blast_Score=96, Evalue=1e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000015
- InterPro:   IPR018030 [H]

Pfam domain/function: PF00577 Usher [H]

EC number: NA

Molecular weight: Translated: 86130; Mature: 86130

Theoretical pI: Translated: 6.37; Mature: 6.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRSLFCFPPARPLSWQALAIRVALAPLFLVSPANAEGSPSRPEETLFDPVMLQSRGIDRT
CCCEEECCCCCCCCHHHHHHHHHHCEEEEEECCCCCCCCCCCHHHHCCHHHHHHCCCCHH
VADSFRHGPRFLPGENALMLNVNGRGRGRITARFNEQGQLCADAAFQKQAGLETPPGFTG
HHHHHHCCCCCCCCCCEEEEEECCCCCEEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCC
REPCFDLRSAWPQTELHLDPAERRADLVVPAQAVSAPGSAEGNWQHGGIAGLFNYDAQYM
CCCCHHHHHCCCCCEEECCHHHCCCCEEEEHHHHCCCCCCCCCCCCCCEEEEECCCHHHH
DSAGNSGGVSFVQLDSEAGFNAGDWIVRSRQTLSRFDGEDSLQHQAAYAQRSFAGIKKVF
HCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
QTGQISLGNSLFGTGQVIGAQLFPETALTGNSGGAGLVEGIADTQSVVEVRQSGVLLYST
HCCCEEECCCCCCCCCEEEHHHCCCHHCCCCCCCCHHHHHHHHHHHHHHHHHCCEEEEEE
TVPAGPFRLQGFSLLNTRSDLAVSLSGSNGEKRQFTVPASALLLNGNSVAPGLSVGVGKM
CCCCCCEEECCEEEECCCCCEEEEEECCCCCCEEEECCCEEEEECCCCCCCCCEECCCCC
DQQGSSEAPWLGTLASGWALTPRTTLNTGLLVSVPYRAVAAAVDNQLPGAGQLSLQSTVA
CCCCCCCCCEEEECCCCEEECCCCCCCCCEEEECCHHHHHHHHHCCCCCCCCEEHHHHHH
QDERHNNTGTLVSVSLGYPLTERLGVSLNSRQQTRQYRELSDALQRDTQDSQGRSRSQYG
HHHCCCCCCCEEEEECCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHCC
AGISWGMPSVGNFALSWAQGTTFGGDDTRYLRAGWSAQIAQAYVGLNLERNTGSGDNGNE
CCCCCCCCCCCCEEEEECCCCCCCCCCCEEEECCCHHHHHHHHHCCEEECCCCCCCCCCC
DRAYLTVSIPFGARSLSSYINTARHNSRAGVRYSDRSSQDRGWSLSTEHDTGSSRTSGTG
CEEEEEEECCCCHHHHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCC
TLDWVTPVSQLSGSLTRDSNDYTSWNVRASGGVVAHGGGVTLTPYSVGDTFAIARVGQEG
EEHHCCCHHHHCCCCCCCCCCCCEEEEEECCCEEEECCCEEEEEECCCCEEEEEEECCCC
GIRLETPAGPTWTDARGYAVLPSLSGYHRSTVQVDTRSLPKNVDISNAWLETELARGAVG
CEEEECCCCCCCCCCCCEEEECCCCCCCCCEEEEEHHCCCCCCCCCHHHHHHHHHCCCCC
RMDFDVVRTRRVLVNVQDAQGAPLPHGAAVFNTEGQFVTVVGSAGAVFLPDAAPGMQLEV
CCCHHHHHEEEEEEEEECCCCCCCCCCCEEEECCCCEEEEEECCCEEECCCCCCCCEEEE
QNAGRPLCSLTLSLPEQADSSGLYETSAAVCR
CCCCCCEEEEEEECCCCCCCCCCEECHHHHCC
>Mature Secondary Structure
MRSLFCFPPARPLSWQALAIRVALAPLFLVSPANAEGSPSRPEETLFDPVMLQSRGIDRT
CCCEEECCCCCCCCHHHHHHHHHHCEEEEEECCCCCCCCCCCHHHHCCHHHHHHCCCCHH
VADSFRHGPRFLPGENALMLNVNGRGRGRITARFNEQGQLCADAAFQKQAGLETPPGFTG
HHHHHHCCCCCCCCCCEEEEEECCCCCEEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCC
REPCFDLRSAWPQTELHLDPAERRADLVVPAQAVSAPGSAEGNWQHGGIAGLFNYDAQYM
CCCCHHHHHCCCCCEEECCHHHCCCCEEEEHHHHCCCCCCCCCCCCCCEEEEECCCHHHH
DSAGNSGGVSFVQLDSEAGFNAGDWIVRSRQTLSRFDGEDSLQHQAAYAQRSFAGIKKVF
HCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
QTGQISLGNSLFGTGQVIGAQLFPETALTGNSGGAGLVEGIADTQSVVEVRQSGVLLYST
HCCCEEECCCCCCCCCEEEHHHCCCHHCCCCCCCCHHHHHHHHHHHHHHHHHCCEEEEEE
TVPAGPFRLQGFSLLNTRSDLAVSLSGSNGEKRQFTVPASALLLNGNSVAPGLSVGVGKM
CCCCCCEEECCEEEECCCCCEEEEEECCCCCCEEEECCCEEEEECCCCCCCCCEECCCCC
DQQGSSEAPWLGTLASGWALTPRTTLNTGLLVSVPYRAVAAAVDNQLPGAGQLSLQSTVA
CCCCCCCCCEEEECCCCEEECCCCCCCCCEEEECCHHHHHHHHHCCCCCCCCEEHHHHHH
QDERHNNTGTLVSVSLGYPLTERLGVSLNSRQQTRQYRELSDALQRDTQDSQGRSRSQYG
HHHCCCCCCCEEEEECCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHCC
AGISWGMPSVGNFALSWAQGTTFGGDDTRYLRAGWSAQIAQAYVGLNLERNTGSGDNGNE
CCCCCCCCCCCCEEEEECCCCCCCCCCCEEEECCCHHHHHHHHHCCEEECCCCCCCCCCC
DRAYLTVSIPFGARSLSSYINTARHNSRAGVRYSDRSSQDRGWSLSTEHDTGSSRTSGTG
CEEEEEEECCCCHHHHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCC
TLDWVTPVSQLSGSLTRDSNDYTSWNVRASGGVVAHGGGVTLTPYSVGDTFAIARVGQEG
EEHHCCCHHHHCCCCCCCCCCCCEEEEEECCCEEEECCCEEEEEECCCCEEEEEEECCCC
GIRLETPAGPTWTDARGYAVLPSLSGYHRSTVQVDTRSLPKNVDISNAWLETELARGAVG
CEEEECCCCCCCCCCCCEEEECCCCCCCCCEEEEEHHCCCCCCCCCHHHHHHHHHCCCCC
RMDFDVVRTRRVLVNVQDAQGAPLPHGAAVFNTEGQFVTVVGSAGAVFLPDAAPGMQLEV
CCCHHHHHEEEEEEEEECCCCCCCCCCCEEEECCCCEEEEEECCCEEECCCCCCCCEEEE
QNAGRPLCSLTLSLPEQADSSGLYETSAAVCR
CCCCCCEEEEEEECCCCCCCCCCEECHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]