| Definition | Serratia proteamaculans 568 chromosome, complete genome. |
|---|---|
| Accession | NC_009832 |
| Length | 5,448,853 |
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The map label for this gene is yebQ [H]
Identifier: 157370607
GI number: 157370607
Start: 2582084
End: 2583520
Strand: Direct
Name: yebQ [H]
Synonym: Spro_2367
Alternate gene names: 157370607
Gene position: 2582084-2583520 (Clockwise)
Preceding gene: 157370600
Following gene: 157370611
Centisome position: 47.39
GC content: 59.85
Gene sequence:
>1437_bases ATGAAGCCAATTACTCAGCATACCGCCCCCAGCCCCCATATCGGTGGGATCCTCGCCAGCCTTTCCTTGTCCATGCTGGT TTCCTCACTGGGTGCCAGTATCGCCAACATCGGTTTGCCCTCGCTGGCGCTGGCGTTTAACACCTCGTTTCAGGCGGTGC AGTGGGTAATGATCGTCTATCTGCTGACCATTACCACCTCCATCATCGCGGTCGGGCGTCTGGGCGACCGCATTGGCCGA CGTCGCCTGTTGCTGCTGGGGATTGGCCTGTTCAGCGTCGCTTCCGCACTCTGTGCCATGGCACCTGATATCTGGCTGCT GCTCTCCGCCCGTATTGCACAAGGGCTGGGAGCGGCAGTGATGATGGCGATGACCATGGCGCTGGTCGGTGAGACGTTGG GGAAAGAAAATACCGGCCGTGCCATGGGGCTGCTTGGCAGCATGTCGGCGATTGGCACCGCGCTGGGTCCTTCGCTTGGT GGCGCATTGATTTTTGGCTTTGGCTGGCGTGCGGTGTTTTTGGTTACCTTTCCGCTGGGCCTGCTGGCCTTGCTGCTGGC TTACCGTTATCTGCCGCACGGTCGGCCGCAACCGCAATCGGAGAGCGGCAGGTTTGATTTGCCCGGCACTTTGCTGCTTG GTGTGACACTGGCCTGCTATGCACTGTCGATGACGCTGGGGCATGGTGATTTCGGTGCCATCAATTTGCTGTTGTTGCTG TGCGCGGGGCTGGGGATCGGACTGTTTGTGCGGCTGGAAAATACCACGGCATCGCCTTTGATACAGCCGGCACTGTTCCG CCAGCCAGGGCTGAGCAGTGGGTTAATGATGAGCGCACTGGTGATGACGGTGATGATGACGTCGCTGGTAGTGGGGCCGT TTTACCTGACGCGCGGTTTGGGCTTGACGGTGGGACAGGCCGGGTTGGCGATGTCAGCCGGGCCGCTGGTGGCCGCTTTG TTCGGTGTGCCTGCCGGCCGACTGGTGGATCGCCTGGGAGCGGCAAGAACAACTGCCGTGGGGCTGGCGATCATGGTCGT CGGCGCGGGAGTAATGTCGATGATGTCAATCAGGCAGGGTGTTTTCGGCTACGTGACCCCTCTTTGCCTGATTACCCTGG GTTACTCGCTATTTCAGGTGGCCAATAACACGGCATTGATGAAGCATGCGGCACCTGAGCAGCGCGGGGTGATCTCCGGC ATGATCAATCTCTCACGCAATCTGGGTTTGATCACCGGTGCTTCCGCCATGGGCGCGTTGTTTATGCTGGCGGCGAACGC CGACGATATCAAGTTGGCGACCGCAGAGGCGATATCCAATGGCATGCGAGTGACCTATCTGGCGGCTGGCGTATTGGTGG CCATTGCGCTGGTAATGACCATCAGGAGCCGTGCCGCCATTAAACGCGACGCTGATTACAGCAGGTCACCCCGGTAG
Upstream 100 bases:
>100_bases TGATATGGCGTAGCATGCACTAATAAACTGCATATGCTGCGTCTTCCGCCAGGTTATCGGCTGGCATAGGCTACTGACAG GTTCTTTCAGGAGTCAGACT
Downstream 100 bases:
>100_bases GCGATATGGATCTTGTTGCCGTCGGGATCACGCAGGTAGGCACCAAAATAACCTTTGCCATAATGAGCGCGTTCGCCGGC TTCACCTTCCGAAGTCCCGC
Product: major facilitator transporter
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 478; Mature: 478
Protein sequence:
>478_residues MKPITQHTAPSPHIGGILASLSLSMLVSSLGASIANIGLPSLALAFNTSFQAVQWVMIVYLLTITTSIIAVGRLGDRIGR RRLLLLGIGLFSVASALCAMAPDIWLLLSARIAQGLGAAVMMAMTMALVGETLGKENTGRAMGLLGSMSAIGTALGPSLG GALIFGFGWRAVFLVTFPLGLLALLLAYRYLPHGRPQPQSESGRFDLPGTLLLGVTLACYALSMTLGHGDFGAINLLLLL CAGLGIGLFVRLENTTASPLIQPALFRQPGLSSGLMMSALVMTVMMTSLVVGPFYLTRGLGLTVGQAGLAMSAGPLVAAL FGVPAGRLVDRLGAARTTAVGLAIMVVGAGVMSMMSIRQGVFGYVTPLCLITLGYSLFQVANNTALMKHAAPEQRGVISG MINLSRNLGLITGASAMGALFMLAANADDIKLATAEAISNGMRVTYLAAGVLVAIALVMTIRSRAAIKRDADYSRSPR
Sequences:
>Translated_478_residues MKPITQHTAPSPHIGGILASLSLSMLVSSLGASIANIGLPSLALAFNTSFQAVQWVMIVYLLTITTSIIAVGRLGDRIGR RRLLLLGIGLFSVASALCAMAPDIWLLLSARIAQGLGAAVMMAMTMALVGETLGKENTGRAMGLLGSMSAIGTALGPSLG GALIFGFGWRAVFLVTFPLGLLALLLAYRYLPHGRPQPQSESGRFDLPGTLLLGVTLACYALSMTLGHGDFGAINLLLLL CAGLGIGLFVRLENTTASPLIQPALFRQPGLSSGLMMSALVMTVMMTSLVVGPFYLTRGLGLTVGQAGLAMSAGPLVAAL FGVPAGRLVDRLGAARTTAVGLAIMVVGAGVMSMMSIRQGVFGYVTPLCLITLGYSLFQVANNTALMKHAAPEQRGVISG MINLSRNLGLITGASAMGALFMLAANADDIKLATAEAISNGMRVTYLAAGVLVAIALVMTIRSRAAIKRDADYSRSPR >Mature_478_residues MKPITQHTAPSPHIGGILASLSLSMLVSSLGASIANIGLPSLALAFNTSFQAVQWVMIVYLLTITTSIIAVGRLGDRIGR RRLLLLGIGLFSVASALCAMAPDIWLLLSARIAQGLGAAVMMAMTMALVGETLGKENTGRAMGLLGSMSAIGTALGPSLG GALIFGFGWRAVFLVTFPLGLLALLLAYRYLPHGRPQPQSESGRFDLPGTLLLGVTLACYALSMTLGHGDFGAINLLLLL CAGLGIGLFVRLENTTASPLIQPALFRQPGLSSGLMMSALVMTVMMTSLVVGPFYLTRGLGLTVGQAGLAMSAGPLVAAL FGVPAGRLVDRLGAARTTAVGLAIMVVGAGVMSMMSIRQGVFGYVTPLCLITLGYSLFQVANNTALMKHAAPEQRGVISG MINLSRNLGLITGASAMGALFMLAANADDIKLATAEAISNGMRVTYLAAGVLVAIALVMTIRSRAAIKRDADYSRSPR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the major facilitator superfamily. TCR/tet family [H]
Homologues:
Organism=Escherichia coli, GI87081983, Length=419, Percent_Identity=28.8782816229117, Blast_Score=167, Evalue=1e-42, Organism=Escherichia coli, GI1790195, Length=408, Percent_Identity=27.4509803921569, Blast_Score=108, Evalue=6e-25, Organism=Escherichia coli, GI1788710, Length=316, Percent_Identity=27.5316455696203, Blast_Score=92, Evalue=8e-20, Organism=Escherichia coli, GI1790146, Length=168, Percent_Identity=29.1666666666667, Blast_Score=83, Evalue=5e-17, Organism=Escherichia coli, GI1789042, Length=322, Percent_Identity=23.6024844720497, Blast_Score=78, Evalue=1e-15, Organism=Escherichia coli, GI1788392, Length=199, Percent_Identity=32.1608040201005, Blast_Score=75, Evalue=9e-15, Organism=Saccharomyces cerevisiae, GI6323735, Length=474, Percent_Identity=25.3164556962025, Blast_Score=68, Evalue=4e-12, Organism=Saccharomyces cerevisiae, GI6324264, Length=181, Percent_Identity=29.8342541436464, Blast_Score=67, Evalue=7e-12, Organism=Saccharomyces cerevisiae, GI6319770, Length=159, Percent_Identity=24.5283018867925, Blast_Score=67, Evalue=8e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR020846 - InterPro: IPR011701 - InterPro: IPR016196 - InterPro: IPR001411 [H]
Pfam domain/function: PF07690 MFS_1 [H]
EC number: NA
Molecular weight: Translated: 49505; Mature: 49505
Theoretical pI: Translated: 10.88; Mature: 10.88
Prosite motif: PS50850 MFS
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 5.6 %Met (Translated Protein) 6.5 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 5.6 %Met (Mature Protein) 6.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKPITQHTAPSPHIGGILASLSLSMLVSSLGASIANIGLPSLALAFNTSFQAVQWVMIVY CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCHHHHHHHHHHH LLTITTSIIAVGRLGDRIGRRRLLLLGIGLFSVASALCAMAPDIWLLLSARIAQGLGAAV HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH MMAMTMALVGETLGKENTGRAMGLLGSMSAIGTALGPSLGGALIFGFGWRAVFLVTFPLG HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH LLALLLAYRYLPHGRPQPQSESGRFDLPGTLLLGVTLACYALSMTLGHGDFGAINLLLLL HHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH CAGLGIGLFVRLENTTASPLIQPALFRQPGLSSGLMMSALVMTVMMTSLVVGPFYLTRGL HHCCCCEEEEEECCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC GLTVGQAGLAMSAGPLVAALFGVPAGRLVDRLGAARTTAVGLAIMVVGAGVMSMMSIRQG CCEECCCCCCCCCHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH VFGYVTPLCLITLGYSLFQVANNTALMKHAAPEQRGVISGMINLSRNLGLITGASAMGAL HHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHHHHHHCCCCEEECHHHHHHH FMLAANADDIKLATAEAISNGMRVTYLAAGVLVAIALVMTIRSRAAIKRDADYSRSPR HHHCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC >Mature Secondary Structure MKPITQHTAPSPHIGGILASLSLSMLVSSLGASIANIGLPSLALAFNTSFQAVQWVMIVY CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCHHHHHHHHHHH LLTITTSIIAVGRLGDRIGRRRLLLLGIGLFSVASALCAMAPDIWLLLSARIAQGLGAAV HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH MMAMTMALVGETLGKENTGRAMGLLGSMSAIGTALGPSLGGALIFGFGWRAVFLVTFPLG HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH LLALLLAYRYLPHGRPQPQSESGRFDLPGTLLLGVTLACYALSMTLGHGDFGAINLLLLL HHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH CAGLGIGLFVRLENTTASPLIQPALFRQPGLSSGLMMSALVMTVMMTSLVVGPFYLTRGL HHCCCCEEEEEECCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC GLTVGQAGLAMSAGPLVAALFGVPAGRLVDRLGAARTTAVGLAIMVVGAGVMSMMSIRQG CCEECCCCCCCCCHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH VFGYVTPLCLITLGYSLFQVANNTALMKHAAPEQRGVISGMINLSRNLGLITGASAMGAL HHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHHHHHHCCCCEEECHHHHHHH FMLAANADDIKLATAEAISNGMRVTYLAAGVLVAIALVMTIRSRAAIKRDADYSRSPR HHHCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9097040; 9278503 [H]