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The map label for this gene is ybdH [H]

Identifier: 157370611

GI number: 157370611

Start: 2586539

End: 2587627

Strand: Direct

Name: ybdH [H]

Synonym: Spro_2371

Alternate gene names: 157370611

Gene position: 2586539-2587627 (Clockwise)

Preceding gene: 157370607

Following gene: 157370613

Centisome position: 47.47

GC content: 59.32

Gene sequence:

>1089_bases
ATGAGTGATAGCCACATTCGCGTGGTCGCCGGCCCCGCCAACTATTTTGCTTACCCCGGGGCCATTGACCAACTGACGCA
ATTTTATTCCCCGCAACAGCTGAACAACGCGCTGTGGTTGTATGGCGAACGTGCGCTGGCCGCGGCCAAACCCTGGCTGC
CAGCGGTGTTTGATGCTGCCGATGCCCGCCGGGTGTTGTTTAACAGCCACTGCAGTGAAAGCACGGTACAAGACATCGTG
CGTCAGGCGGGAACAGACCGGCAGGTGGTGATTGGCGTTGGCGGCGGTGCGGTGCTGGACACCGCCAAGGTGGTGGCACG
TCGGCTGGGGTTGCCGTTGGTGGCGATCCCGACCATTGCCGCGACCTGTGCCGCCTGGACGCCGCTTTCGGTCTGGTATA
ACGATCAGGGGCAGGCCCTGCGCTATGAGATCTTCGACGATGCCAATCATTTGGTGTTGGTGGAGCCGGAAATTATCCTG
CGTGCGCCAAAAGAGTATTTGCTGGCCGGTATCGGCGACACCCTGGCGAAATGGTACGAAGCCGTGGTACTCAGTCCACA
ACCGGAACGTTTGCCGCTCACCGTCCAGCTGGGTCTTAATACCGCGCTGACGCTGCGCGATGTATTGCTCAACGAAAGCG
AAGCGGCGCTAAAAGCCCAGGCAGAAGGGCAATCGAGTCAGGCTTTCCTTAATGTGCTGGAGGCGATTATTGCCGGCGGC
GGTTTGGTGGGCGGACTGGGCGATCGTTATACCCGCATCGCCGCGGCGCATTCGGTGCATAACGGCCTGACCGCATTGCC
GCAGACCGATGCCTTCCTGCATGGTACCAAAGTCGCGTATGGCATTTTGGTGCAAAGCGCGTTGTTGGGGCAGACGGAAA
CCGTGGCGCAGTTGAAAGCGCTTTATCACCGTCTGGATTTGCCGGTGAGTCTGGCTGCCCTGCAGGTGGATATTCACGAT
GAGGAGCAAATCAAACGGTTGATTGAGCGTACCCTGCAAGCGGGAGAGTCGATTCATCTGCTGCCGCTGGCGCTTAACGA
AACCACATTGCGCTCGGCCCTGGGCTATGTGGAGTCGCAGACGGCGTAA

Upstream 100 bases:

>100_bases
ATGACAATGAACGAAAAATCATAAGCTAATGCTAAAGAGTATTAGGCAACGCTAAACTCGCCTTTATGATGGCAAGATCA
GACAAAATAAGGACTTGAAC

Downstream 100 bases:

>100_bases
CTGACAACGGCTGGGGAACCCTGTTTCCCCTTGCCCGGGGGATTAGGTTGGCCTGTTATTACGCAGCCAGGCAACGGTAT
CCTGAAGCGTTTGTTCCAGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 362; Mature: 361

Protein sequence:

>362_residues
MSDSHIRVVAGPANYFAYPGAIDQLTQFYSPQQLNNALWLYGERALAAAKPWLPAVFDAADARRVLFNSHCSESTVQDIV
RQAGTDRQVVIGVGGGAVLDTAKVVARRLGLPLVAIPTIAATCAAWTPLSVWYNDQGQALRYEIFDDANHLVLVEPEIIL
RAPKEYLLAGIGDTLAKWYEAVVLSPQPERLPLTVQLGLNTALTLRDVLLNESEAALKAQAEGQSSQAFLNVLEAIIAGG
GLVGGLGDRYTRIAAAHSVHNGLTALPQTDAFLHGTKVAYGILVQSALLGQTETVAQLKALYHRLDLPVSLAALQVDIHD
EEQIKRLIERTLQAGESIHLLPLALNETTLRSALGYVESQTA

Sequences:

>Translated_362_residues
MSDSHIRVVAGPANYFAYPGAIDQLTQFYSPQQLNNALWLYGERALAAAKPWLPAVFDAADARRVLFNSHCSESTVQDIV
RQAGTDRQVVIGVGGGAVLDTAKVVARRLGLPLVAIPTIAATCAAWTPLSVWYNDQGQALRYEIFDDANHLVLVEPEIIL
RAPKEYLLAGIGDTLAKWYEAVVLSPQPERLPLTVQLGLNTALTLRDVLLNESEAALKAQAEGQSSQAFLNVLEAIIAGG
GLVGGLGDRYTRIAAAHSVHNGLTALPQTDAFLHGTKVAYGILVQSALLGQTETVAQLKALYHRLDLPVSLAALQVDIHD
EEQIKRLIERTLQAGESIHLLPLALNETTLRSALGYVESQTA
>Mature_361_residues
SDSHIRVVAGPANYFAYPGAIDQLTQFYSPQQLNNALWLYGERALAAAKPWLPAVFDAADARRVLFNSHCSESTVQDIVR
QAGTDRQVVIGVGGGAVLDTAKVVARRLGLPLVAIPTIAATCAAWTPLSVWYNDQGQALRYEIFDDANHLVLVEPEIILR
APKEYLLAGIGDTLAKWYEAVVLSPQPERLPLTVQLGLNTALTLRDVLLNESEAALKAQAEGQSSQAFLNVLEAIIAGGG
LVGGLGDRYTRIAAAHSVHNGLTALPQTDAFLHGTKVAYGILVQSALLGQTETVAQLKALYHRLDLPVSLAALQVDIHDE
EQIKRLIERTLQAGESIHLLPLALNETTLRSALGYVESQTA

Specific function: Unknown

COG id: COG0371

COG function: function code C; Glycerol dehydrogenase and related enzymes

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the iron-containing alcohol dehydrogenase family [H]

Homologues:

Organism=Escherichia coli, GI1786815, Length=362, Percent_Identity=65.1933701657459, Blast_Score=467, Evalue=1e-133,
Organism=Escherichia coli, GI87082352, Length=350, Percent_Identity=33.4285714285714, Blast_Score=155, Evalue=3e-39,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001670
- InterPro:   IPR018211
- InterPro:   IPR016205 [H]

Pfam domain/function: PF00465 Fe-ADH [H]

EC number: 1.1.-.- [C]

Molecular weight: Translated: 39005; Mature: 38874

Theoretical pI: Translated: 5.35; Mature: 5.35

Prosite motif: PS00913 ADH_IRON_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
0.3 %Met     (Translated Protein)
0.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDSHIRVVAGPANYFAYPGAIDQLTQFYSPQQLNNALWLYGERALAAAKPWLPAVFDAA
CCCCEEEEEECCHHHCCCCCHHHHHHHHCCHHHHCCEEEEECCHHHHHCCCCCHHHHCCH
DARRVLFNSHCSESTVQDIVRQAGTDRQVVIGVGGGAVLDTAKVVARRLGLPLVAIPTIA
HHHHHHHHCCCCHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHCCCEEEHHHHH
ATCAAWTPLSVWYNDQGQALRYEIFDDANHLVLVEPEIILRAPKEYLLAGIGDTLAKWYE
HHHHCCCCEEEEECCCCCEEEEEEECCCCCEEEECCHHHHHCCHHHHHHCCCHHHHHHHH
AVVLSPQPERLPLTVQLGLNTALTLRDVLLNESEAALKAQAEGQSSQAFLNVLEAIIAGG
HEEECCCCCCCCEEEEECCCCHHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHHHHHHCC
GLVGGLGDRYTRIAAAHSVHNGLTALPQTDAFLHGTKVAYGILVQSALLGQTETVAQLKA
CCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
LYHRLDLPVSLAALQVDIHDEEQIKRLIERTLQAGESIHLLPLALNETTLRSALGYVESQ
HHHHHCCCEEEEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHCC
TA
CC
>Mature Secondary Structure 
SDSHIRVVAGPANYFAYPGAIDQLTQFYSPQQLNNALWLYGERALAAAKPWLPAVFDAA
CCCEEEEEECCHHHCCCCCHHHHHHHHCCHHHHCCEEEEECCHHHHHCCCCCHHHHCCH
DARRVLFNSHCSESTVQDIVRQAGTDRQVVIGVGGGAVLDTAKVVARRLGLPLVAIPTIA
HHHHHHHHCCCCHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHCCCEEEHHHHH
ATCAAWTPLSVWYNDQGQALRYEIFDDANHLVLVEPEIILRAPKEYLLAGIGDTLAKWYE
HHHHCCCCEEEEECCCCCEEEEEEECCCCCEEEECCHHHHHCCHHHHHHCCCHHHHHHHH
AVVLSPQPERLPLTVQLGLNTALTLRDVLLNESEAALKAQAEGQSSQAFLNVLEAIIAGG
HEEECCCCCCCCEEEEECCCCHHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHHHHHHCC
GLVGGLGDRYTRIAAAHSVHNGLTALPQTDAFLHGTKVAYGILVQSALLGQTETVAQLKA
CCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
LYHRLDLPVSLAALQVDIHDEEQIKRLIERTLQAGESIHLLPLALNETTLRSALGYVESQ
HHHHHCCCEEEEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHCC
TA
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503; 1848300; 7567469 [H]