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The map label for this gene is sfmD [H]

Identifier: 157370350

GI number: 157370350

Start: 2300917

End: 2303265

Strand: Reverse

Name: sfmD [H]

Synonym: Spro_2108

Alternate gene names: 157370350

Gene position: 2303265-2300917 (Counterclockwise)

Preceding gene: 157370351

Following gene: 157370349

Centisome position: 42.27

GC content: 58.28

Gene sequence:

>2349_bases
ATGCCGGACACCACTTTGTACCTGGAGCCGGTGGTCAATGGGCGTCAAACCGGAAAAGTAGTACCGGTCAACTACCGAGG
CGGCCACTATTACCTTACGCCGCAGCAGTTGCTCGATGCAGGCCTGCCGGTGGCGGATAAACAGGCGAAAGAAATTGCGG
TCGACCAATTGGAGAAGGTTGACGTCACCTACAGTGGCGATACTCAGCAGTTGATGATCAACGTCCCCAACGACTGGTTA
CCCAATCAGAAATTCAACGCTCAAAACCCGTTGGATCGCCTGCCGGCACAAAGCAGCCTCGGTCTGCTGTTCAATTATGA
TATTTATGCCAGCCAAAGCAGCGCCAACGGCCAGCCGGGCTATCTTTCCGCCTGGAGTGAACAGCGGCTGTTCGACGGCT
TTGGCGTAGTGTCCAACACCGGTATTTTCCGCGGCAGCTTTAACGACGGCGCCAACAACAGTGACCAGGGCAACCGCTAT
ATCCGCTACGACAGCCAGTGGCGCTATAACGATGATGAACGCCTGCTCAGCTATACCGCCGGCGATCTGGCCACCGGCGC
TCTGACCTGGAGCAGCTCGGTGCGTATCGGCGGCGTCCAGCTGGCACGTAACTTTGCCTCGCGCCCGGATCTGATCACCT
ATCCGCTGCCGCAGTTTTCCGGCCAGGCGGCGCTGCCCAGCAGCGTCGATCTGTATATCAACAGCTATAAAAACAGCAGC
ACCAGCGTTAACCCTGGCCCTTTTACCCTCAATACCGTGCCCTACATTAACGGAGCCGGGCAGGCCACGGTGGTGACTAC
CGACGCGCTGGGCCGCCAGGTCAGTACCGTGGTGCCGTTTTATGTCGCCAGTAATCTGTTGCAGGCCGGCATGAGCGATT
TCAGCCTGTCCAGCGGCGCGTTACGGCGCAATTATGGTATTAATTCAGCGGATTATGGACAGTGGGTGGCCAGTGGCAGC
GGGCGTTACGGCGTCACGGACTGGTTAACCCTGGAAGGTCGAGCCGAAGGAGCCGCAGAGTTGGCGGTGGGCGGCGCAGG
GGCCAATATTCGTGTTGGTCAGTGGGGGGTATTCAATGCCTCTTACAGCTACAGTCAGGCCGGCGAAAATGCCTTTAACG
ATTATCAACCTTCGCAGCAGCGCAACTACTACGATCCGCTGACCGGTCAACCCATCCCTCAGCCCGACACCCAGCCGGTC
TATCAGTACAGCACCGACCATGGCGATCAGAGCAGCATCGGCTACACCTACAGCAATCGCTATTACAGCCTGAATGCCCA
GCGCATTCTGCGCAGTGCGGGCTTTGGCGATATTTCGGTGTATAAAAGTGACTATCGCCTGAGCCGCCGTACCGATCAAC
TGACCGGCAGTATTGGTCTGAACCGATTCGGTAGCATCGGTGCGGGCTATTTCGATGTACGCGATGCCATTGGCCTGCGC
ACTCGCCTGGTTAACTTCTCTTACAGCATTTCACTGTGGCGCAATACCAGCCTGTATGCGTCAGTGAACCGCGAAATCGG
CAGCAGCGGCTACAGCGCCCAGCTGCAACTGTCTATCCCCTTCGACAGTTGGGGTACCGCCAGCGTCAGCGCCTCTCGTG
ACAATGAAAACCGCTGGAACCAACGCGTCAGCTACAGCCGCGCCGCGCCGACCGACGGCGGTTTGGGCTGGAACCTGGCC
TATGCCGATGGGCAAAGCAGCGAAAGCTACACCCAGGCCGATATCACCTGGCGCACCCGCCTGCTCGAAGCCCGCGGCGG
GATGTACGGCAACAGCGATGATTACACCCGCTGGGGCGAAGTGAGTGGTTCGCTGGTGGCGATGCAAGGCGATCTGTACG
CCACCAACACCATCAACGATGCTTTTGCATTGATCTCTACCGACGGCTATCCGGACATTCCGGTACGCTATGAGAATCAG
TTAATCGGCGTGACCAACGCCAAAGGCTATCTGCTGGTGCCGACCGTCACCTCCTATTACCACGCCAAATTCCAAATCGA
TCCGCTCAATCTGCCGGCGGACGTGGCGGTTCCCAGCGTGGAGAAAACCGTGGCGATCCGCGATCACAGCGGCTTCCTGG
TCGATTTCCCTGTCCAGCAAATCTCCGCCGCCGACATCAAACTGGTCGACGCACAGGGGAAACCGCTGGCCAACGGCAGC
GAAGTCGCGGTTATCGGTAGCAAGCAGCAAAGCTACGTCGGTTGGGATGGCATGGTTTATGTGGATCCGGTGCAACGGCA
AAACCGCCTGAGCGTCATTCCGGCCGACGGCAGCGCCCCCTGTCAGGCGCAATTTAGCCTGACCAAAACCCAGGGGATCC
AAAGCATCGGCCCCATTGTTTGCCAGTAA

Upstream 100 bases:

>100_bases
GCTCAAACCGTTAGCCTTCGCCGTACTCTGCGCAGTGGCCACACCGTGGTCACCGTACGCCTGCGCCGATGATTTACCTC
CGCCGCCCAGCGCCATCAGC

Downstream 100 bases:

>100_bases
TTCATGATGGAGAAAAATATGATTAGTGGATCCAAAGCGTTATTACTGGCGCTGCTGCTGCTCATCGGCCGACAGGCGCT
GGCCGACTGCACCACCGCCA

Product: fimbrial biogenesis outer membrane usher protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 782; Mature: 781

Protein sequence:

>782_residues
MPDTTLYLEPVVNGRQTGKVVPVNYRGGHYYLTPQQLLDAGLPVADKQAKEIAVDQLEKVDVTYSGDTQQLMINVPNDWL
PNQKFNAQNPLDRLPAQSSLGLLFNYDIYASQSSANGQPGYLSAWSEQRLFDGFGVVSNTGIFRGSFNDGANNSDQGNRY
IRYDSQWRYNDDERLLSYTAGDLATGALTWSSSVRIGGVQLARNFASRPDLITYPLPQFSGQAALPSSVDLYINSYKNSS
TSVNPGPFTLNTVPYINGAGQATVVTTDALGRQVSTVVPFYVASNLLQAGMSDFSLSSGALRRNYGINSADYGQWVASGS
GRYGVTDWLTLEGRAEGAAELAVGGAGANIRVGQWGVFNASYSYSQAGENAFNDYQPSQQRNYYDPLTGQPIPQPDTQPV
YQYSTDHGDQSSIGYTYSNRYYSLNAQRILRSAGFGDISVYKSDYRLSRRTDQLTGSIGLNRFGSIGAGYFDVRDAIGLR
TRLVNFSYSISLWRNTSLYASVNREIGSSGYSAQLQLSIPFDSWGTASVSASRDNENRWNQRVSYSRAAPTDGGLGWNLA
YADGQSSESYTQADITWRTRLLEARGGMYGNSDDYTRWGEVSGSLVAMQGDLYATNTINDAFALISTDGYPDIPVRYENQ
LIGVTNAKGYLLVPTVTSYYHAKFQIDPLNLPADVAVPSVEKTVAIRDHSGFLVDFPVQQISAADIKLVDAQGKPLANGS
EVAVIGSKQQSYVGWDGMVYVDPVQRQNRLSVIPADGSAPCQAQFSLTKTQGIQSIGPIVCQ

Sequences:

>Translated_782_residues
MPDTTLYLEPVVNGRQTGKVVPVNYRGGHYYLTPQQLLDAGLPVADKQAKEIAVDQLEKVDVTYSGDTQQLMINVPNDWL
PNQKFNAQNPLDRLPAQSSLGLLFNYDIYASQSSANGQPGYLSAWSEQRLFDGFGVVSNTGIFRGSFNDGANNSDQGNRY
IRYDSQWRYNDDERLLSYTAGDLATGALTWSSSVRIGGVQLARNFASRPDLITYPLPQFSGQAALPSSVDLYINSYKNSS
TSVNPGPFTLNTVPYINGAGQATVVTTDALGRQVSTVVPFYVASNLLQAGMSDFSLSSGALRRNYGINSADYGQWVASGS
GRYGVTDWLTLEGRAEGAAELAVGGAGANIRVGQWGVFNASYSYSQAGENAFNDYQPSQQRNYYDPLTGQPIPQPDTQPV
YQYSTDHGDQSSIGYTYSNRYYSLNAQRILRSAGFGDISVYKSDYRLSRRTDQLTGSIGLNRFGSIGAGYFDVRDAIGLR
TRLVNFSYSISLWRNTSLYASVNREIGSSGYSAQLQLSIPFDSWGTASVSASRDNENRWNQRVSYSRAAPTDGGLGWNLA
YADGQSSESYTQADITWRTRLLEARGGMYGNSDDYTRWGEVSGSLVAMQGDLYATNTINDAFALISTDGYPDIPVRYENQ
LIGVTNAKGYLLVPTVTSYYHAKFQIDPLNLPADVAVPSVEKTVAIRDHSGFLVDFPVQQISAADIKLVDAQGKPLANGS
EVAVIGSKQQSYVGWDGMVYVDPVQRQNRLSVIPADGSAPCQAQFSLTKTQGIQSIGPIVCQ
>Mature_781_residues
PDTTLYLEPVVNGRQTGKVVPVNYRGGHYYLTPQQLLDAGLPVADKQAKEIAVDQLEKVDVTYSGDTQQLMINVPNDWLP
NQKFNAQNPLDRLPAQSSLGLLFNYDIYASQSSANGQPGYLSAWSEQRLFDGFGVVSNTGIFRGSFNDGANNSDQGNRYI
RYDSQWRYNDDERLLSYTAGDLATGALTWSSSVRIGGVQLARNFASRPDLITYPLPQFSGQAALPSSVDLYINSYKNSST
SVNPGPFTLNTVPYINGAGQATVVTTDALGRQVSTVVPFYVASNLLQAGMSDFSLSSGALRRNYGINSADYGQWVASGSG
RYGVTDWLTLEGRAEGAAELAVGGAGANIRVGQWGVFNASYSYSQAGENAFNDYQPSQQRNYYDPLTGQPIPQPDTQPVY
QYSTDHGDQSSIGYTYSNRYYSLNAQRILRSAGFGDISVYKSDYRLSRRTDQLTGSIGLNRFGSIGAGYFDVRDAIGLRT
RLVNFSYSISLWRNTSLYASVNREIGSSGYSAQLQLSIPFDSWGTASVSASRDNENRWNQRVSYSRAAPTDGGLGWNLAY
ADGQSSESYTQADITWRTRLLEARGGMYGNSDDYTRWGEVSGSLVAMQGDLYATNTINDAFALISTDGYPDIPVRYENQL
IGVTNAKGYLLVPTVTSYYHAKFQIDPLNLPADVAVPSVEKTVAIRDHSGFLVDFPVQQISAADIKLVDAQGKPLANGSE
VAVIGSKQQSYVGWDGMVYVDPVQRQNRLSVIPADGSAPCQAQFSLTKTQGIQSIGPIVCQ

Specific function: Involved in the export and assembly of sfmA fimbrial subunits across the outer membrane [H]

COG id: COG3188

COG function: function code NU; P pilus assembly protein, porin PapC

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fimbrial export usher family [H]

Homologues:

Organism=Escherichia coli, GI1786744, Length=630, Percent_Identity=23.1746031746032, Blast_Score=69, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000015
- InterPro:   IPR018030 [H]

Pfam domain/function: PF00577 Usher [H]

EC number: NA

Molecular weight: Translated: 85315; Mature: 85184

Theoretical pI: Translated: 4.84; Mature: 4.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPDTTLYLEPVVNGRQTGKVVPVNYRGGHYYLTPQQLLDAGLPVADKQAKEIAVDQLEKV
CCCCEEEEEECCCCCCCCCEEEEEECCCEEEECHHHHHHCCCCCCCCHHHHHHHHHHHEE
DVTYSGDTQQLMINVPNDWLPNQKFNAQNPLDRLPAQSSLGLLFNYDIYASQSSANGQPG
EEEECCCCEEEEEECCCCCCCCCCCCCCCCHHHCCCCCCCCEEEEEEEEECCCCCCCCCC
YLSAWSEQRLFDGFGVVSNTGIFRGSFNDGANNSDQGNRYIRYDSQWRYNDDERLLSYTA
EEECCCCCHHHCCCCEEECCEEEEECCCCCCCCCCCCCEEEEECCCCCCCCCHHEEEEEC
GDLATGALTWSSSVRIGGVQLARNFASRPDLITYPLPQFSGQAALPSSVDLYINSYKNSS
CCCEEEEEEECCCEEECHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCEEEEEEECCCCC
TSVNPGPFTLNTVPYINGAGQATVVTTDALGRQVSTVVPFYVASNLLQAGMSDFSLSSGA
CCCCCCCEEEECCCEECCCCCEEEEEHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCC
LRRNYGINSADYGQWVASGSGRYGVTDWLTLEGRAEGAAELAVGGAGANIRVGQWGVFNA
HHHCCCCCCCCCCHHEECCCCCCCCEEEEEECCCCCCCEEEEECCCCCEEEECCEEEEEC
SYSYSQAGENAFNDYQPSQQRNYYDPLTGQPIPQPDTQPVYQYSTDHGDQSSIGYTYSNR
CCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCEEECCE
YYSLNAQRILRSAGFGDISVYKSDYRLSRRTDQLTGSIGLNRFGSIGAGYFDVRDAIGLR
EEEECHHHHHHHCCCCCEEEEECCCHHHHHHHHHHCCCCCCCCCCCCCCEEHHHHHHCCE
TRLVNFSYSISLWRNTSLYASVNREIGSSGYSAQLQLSIPFDSWGTASVSASRDNENRWN
EEEEEEEEEEEEEECCEEEEEECHHHCCCCCCEEEEEEECCCCCCCEEEECCCCCCHHHH
QRVSYSRAAPTDGGLGWNLAYADGQSSESYTQADITWRTRLLEARGGMYGNSDDYTRWGE
HHHCCCCCCCCCCCCEEEEEECCCCCCCCEEEEEHHHHHHHHHHCCCCCCCCCCCCCCCC
VSGSLVAMQGDLYATNTINDAFALISTDGYPDIPVRYENQLIGVTNAKGYLLVPTVTSYY
CCCEEEEEECCEEEECCCCCEEEEEECCCCCCCCEEECCEEEEEECCCCEEEEEEECCEE
HAKFQIDPLNLPADVAVPSVEKTVAIRDHSGFLVDFPVQQISAADIKLVDAQGKPLANGS
EEEEEECCCCCCCCCCCCCCCEEEEEECCCCEEEECCHHHCCCCCEEEEECCCCCCCCCC
EVAVIGSKQQSYVGWDGMVYVDPVQRQNRLSVIPADGSAPCQAQFSLTKTQGIQSIGPIV
EEEEEECCCCCEECCCCEEEECCCCCCCCEEEEECCCCCCCEEEEEEHHHCCCHHCCCEE
CQ
CC
>Mature Secondary Structure 
PDTTLYLEPVVNGRQTGKVVPVNYRGGHYYLTPQQLLDAGLPVADKQAKEIAVDQLEKV
CCCEEEEEECCCCCCCCCEEEEEECCCEEEECHHHHHHCCCCCCCCHHHHHHHHHHHEE
DVTYSGDTQQLMINVPNDWLPNQKFNAQNPLDRLPAQSSLGLLFNYDIYASQSSANGQPG
EEEECCCCEEEEEECCCCCCCCCCCCCCCCHHHCCCCCCCCEEEEEEEEECCCCCCCCCC
YLSAWSEQRLFDGFGVVSNTGIFRGSFNDGANNSDQGNRYIRYDSQWRYNDDERLLSYTA
EEECCCCCHHHCCCCEEECCEEEEECCCCCCCCCCCCCEEEEECCCCCCCCCHHEEEEEC
GDLATGALTWSSSVRIGGVQLARNFASRPDLITYPLPQFSGQAALPSSVDLYINSYKNSS
CCCEEEEEEECCCEEECHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCEEEEEEECCCCC
TSVNPGPFTLNTVPYINGAGQATVVTTDALGRQVSTVVPFYVASNLLQAGMSDFSLSSGA
CCCCCCCEEEECCCEECCCCCEEEEEHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCC
LRRNYGINSADYGQWVASGSGRYGVTDWLTLEGRAEGAAELAVGGAGANIRVGQWGVFNA
HHHCCCCCCCCCCHHEECCCCCCCCEEEEEECCCCCCCEEEEECCCCCEEEECCEEEEEC
SYSYSQAGENAFNDYQPSQQRNYYDPLTGQPIPQPDTQPVYQYSTDHGDQSSIGYTYSNR
CCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCEEECCE
YYSLNAQRILRSAGFGDISVYKSDYRLSRRTDQLTGSIGLNRFGSIGAGYFDVRDAIGLR
EEEECHHHHHHHCCCCCEEEEECCCHHHHHHHHHHCCCCCCCCCCCCCCEEHHHHHHCCE
TRLVNFSYSISLWRNTSLYASVNREIGSSGYSAQLQLSIPFDSWGTASVSASRDNENRWN
EEEEEEEEEEEEEECCEEEEEECHHHCCCCCCEEEEEEECCCCCCCEEEECCCCCCHHHH
QRVSYSRAAPTDGGLGWNLAYADGQSSESYTQADITWRTRLLEARGGMYGNSDDYTRWGE
HHHCCCCCCCCCCCCEEEEEECCCCCCCCEEEEEHHHHHHHHHHCCCCCCCCCCCCCCCC
VSGSLVAMQGDLYATNTINDAFALISTDGYPDIPVRYENQLIGVTNAKGYLLVPTVTSYY
CCCEEEEEECCEEEECCCCCEEEEEECCCCCCCCEEECCEEEEEECCCCEEEEEEECCEE
HAKFQIDPLNLPADVAVPSVEKTVAIRDHSGFLVDFPVQQISAADIKLVDAQGKPLANGS
EEEEEECCCCCCCCCCCCCCCEEEEEECCCCEEEECCHHHCCCCCEEEEECCCCCCCCCC
EVAVIGSKQQSYVGWDGMVYVDPVQRQNRLSVIPADGSAPCQAQFSLTKTQGIQSIGPIV
EEEEEECCCCCEECCCCEEEECCCCCCCCEEEEECCCCCCCEEEEEEHHHCCCHHCCCEE
CQ
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]