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The map label for this gene is ycdX [C]

Identifier: 157370176

GI number: 157370176

Start: 2119181

End: 2119918

Strand: Direct

Name: ycdX [C]

Synonym: Spro_1934

Alternate gene names: 157370176

Gene position: 2119181-2119918 (Clockwise)

Preceding gene: 157370175

Following gene: 157370177

Centisome position: 38.89

GC content: 58.81

Gene sequence:

>738_bases
ATGTACCCCGTTGATTTACATATGCACACCGTCGCCAGCACCCACGCCTACAGCACGCTGCATGATTACATCGTCGAAGC
CCGGCAAAAGGGCATCAAACTTTTCGCCATCACCGACCATGGCCCGGACATGGCAGATGCGCCGCATTATTGGCACTTTA
TGAACATGCACGTGTGGCCGCGCCTGGTGGACGGGGTGGGCATCCTGCGCGGCATCGAGGCCAACATTAAAAATCGGCAG
GGCGATATCGACTGTACCGGTCCGATGCTGGATAAAATCGACGTGATTATTGCCGGTTTTCACGAGCCGGTGTTTGCGCC
ACAGGACAAGGCGGCCAATACCGAAGCGATGATTGCTGCGATGGCGCAGGGGGACGTGCACATTATCAGCCACCCAGGTA
ACCCAAGATACCCGATTGATATTGCCGCGGTTGCCGCTGCGGCGGCCAGGTATGAAGTGGCGCTGGAGCTGAACAACTCG
TCGTTCACCCACTCGCGCAAGGGCAGTGAAGACAACTGTCGTGCGATTGCTGCTGCGGTGCGTGATGCCGGCGGCTGGCT
GGCGCTGGGCTCGGATTCCCACATTGCCTTCTCGCTCGGCGGCTTTGAACACTGCGAACGCATTATTGCCGAAGTGGAGT
TCCCGCAGGAACGCATCCTTAACGTTAGCCCACGGCGCCTGCTGGACTTTCTCGAACGGCGCGGCAAGCCGGCGATTGCG
GAACTGGCCGATTTGTGA

Upstream 100 bases:

>100_bases
TGCTCGGTTACTGACCTTCCGGTGATGCACCTGCTAAACTCGATAAATAACAAACCGCGCCTGCCGCCGCATTCTGGCAG
GCCGCTCAGAAGGAGAAGCA

Downstream 100 bases:

>100_bases
CATCGTCCCGGCAAATTTTTCCGTATTGTATAAGGCATTACCATGAATGAGTTTTCTGTTGTTTGCCGCGTGCTGGGCAC
GCTGTTTTATCGTCAGCCGC

Product: putative hydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 245; Mature: 245

Protein sequence:

>245_residues
MYPVDLHMHTVASTHAYSTLHDYIVEARQKGIKLFAITDHGPDMADAPHYWHFMNMHVWPRLVDGVGILRGIEANIKNRQ
GDIDCTGPMLDKIDVIIAGFHEPVFAPQDKAANTEAMIAAMAQGDVHIISHPGNPRYPIDIAAVAAAAARYEVALELNNS
SFTHSRKGSEDNCRAIAAAVRDAGGWLALGSDSHIAFSLGGFEHCERIIAEVEFPQERILNVSPRRLLDFLERRGKPAIA
ELADL

Sequences:

>Translated_245_residues
MYPVDLHMHTVASTHAYSTLHDYIVEARQKGIKLFAITDHGPDMADAPHYWHFMNMHVWPRLVDGVGILRGIEANIKNRQ
GDIDCTGPMLDKIDVIIAGFHEPVFAPQDKAANTEAMIAAMAQGDVHIISHPGNPRYPIDIAAVAAAAARYEVALELNNS
SFTHSRKGSEDNCRAIAAAVRDAGGWLALGSDSHIAFSLGGFEHCERIIAEVEFPQERILNVSPRRLLDFLERRGKPAIA
ELADL
>Mature_245_residues
MYPVDLHMHTVASTHAYSTLHDYIVEARQKGIKLFAITDHGPDMADAPHYWHFMNMHVWPRLVDGVGILRGIEANIKNRQ
GDIDCTGPMLDKIDVIIAGFHEPVFAPQDKAANTEAMIAAMAQGDVHIISHPGNPRYPIDIAAVAAAAARYEVALELNNS
SFTHSRKGSEDNCRAIAAAVRDAGGWLALGSDSHIAFSLGGFEHCERIIAEVEFPQERILNVSPRRLLDFLERRGKPAIA
ELADL

Specific function: Unknown

COG id: COG1387

COG function: function code ER; Histidinol phosphatase and related hydrolases of the PHP family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the PHP family

Homologues:

Organism=Escherichia coli, GI1787271, Length=245, Percent_Identity=76.734693877551, Blast_Score=391, Evalue=1e-110,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y1934_SERP5 (A8GD47)

Other databases:

- EMBL:   CP000826
- RefSeq:   YP_001478165.1
- ProteinModelPortal:   A8GD47
- SMR:   A8GD47
- STRING:   A8GD47
- GeneID:   5606873
- GenomeReviews:   CP000826_GR
- KEGG:   spe:Spro_1934
- eggNOG:   COG1387
- HOGENOM:   HBG734021
- OMA:   HTIASTH
- ProtClustDB:   PRK09248
- BioCyc:   SPRO399741:SPRO_1934-MONOMER
- HAMAP:   MF_01561
- InterPro:   IPR004013
- InterPro:   IPR003141
- InterPro:   IPR016195
- SMART:   SM00481

Pfam domain/function: PF02811 PHP; SSF89550 PHP-like

EC number: NA

Molecular weight: Translated: 26949; Mature: 26949

Theoretical pI: Translated: 6.13; Mature: 6.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYPVDLHMHTVASTHAYSTLHDYIVEARQKGIKLFAITDHGPDMADAPHYWHFMNMHVWP
CCCEEEEHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCEEEEECHHHHH
RLVDGVGILRGIEANIKNRQGDIDCTGPMLDKIDVIIAGFHEPVFAPQDKAANTEAMIAA
HHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHEEEEECCCCCCCCCCCCCCCHHHHHHE
MAQGDVHIISHPGNPRYPIDIAAVAAAAARYEVALELNNSSFTHSRKGSEDNCRAIAAAV
ECCCCEEEEECCCCCCCCCHHHHHHHHHHEEEEEEEECCCCCCCCCCCCCHHHHHHHHHH
RDAGGWLALGSDSHIAFSLGGFEHCERIIAEVEFPQERILNVSPRRLLDFLERRGKPAIA
HCCCCEEEECCCCEEEEEECCHHHHHHHHHHCCCCHHHHCCCCHHHHHHHHHHCCCCCHH
ELADL
HHHCC
>Mature Secondary Structure
MYPVDLHMHTVASTHAYSTLHDYIVEARQKGIKLFAITDHGPDMADAPHYWHFMNMHVWP
CCCEEEEHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCEEEEECHHHHH
RLVDGVGILRGIEANIKNRQGDIDCTGPMLDKIDVIIAGFHEPVFAPQDKAANTEAMIAA
HHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHEEEEECCCCCCCCCCCCCCCHHHHHHE
MAQGDVHIISHPGNPRYPIDIAAVAAAAARYEVALELNNSSFTHSRKGSEDNCRAIAAAV
ECCCCEEEEECCCCCCCCCHHHHHHHHHHEEEEEEEECCCCCCCCCCCCCHHHHHHHHHH
RDAGGWLALGSDSHIAFSLGGFEHCERIIAEVEFPQERILNVSPRRLLDFLERRGKPAIA
HCCCCEEEECCCCEEEEEECCHHHHHHHHHHCCCCHHHHCCCCHHHHHHHHHHCCCCCHH
ELADL
HHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA