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The map label for this gene is ycdY [H]

Identifier: 157370177

GI number: 157370177

Start: 2119961

End: 2120548

Strand: Direct

Name: ycdY [H]

Synonym: Spro_1935

Alternate gene names: 157370177

Gene position: 2119961-2120548 (Clockwise)

Preceding gene: 157370176

Following gene: 157370178

Centisome position: 38.91

GC content: 56.46

Gene sequence:

>588_bases
ATGAATGAGTTTTCTGTTGTTTGCCGCGTGCTGGGCACGCTGTTTTATCGTCAGCCGCAAGATCCGTTGCTGGTGCCGCT
GTTTACGTTGATCAAAGAAGGCAAACTGAAGCAACACTGGCCGCTGGAGCAGGACGAACTGTTGGTTCGGCTGCAGCAGG
GTTGTGATGTCAACCAGCTGTCCAGTGATTTCAACGCGATGTTTGTCGGCAGCGAGTGCAGCGTGTCACCATTCCGCTCT
GCCTATGTTGAAGGGGCGACGGAAGCGGAAGTGCGTACTTTCCTGCAACAACGGGGCATGCCATTAAGCGAAGCGCCGGC
CGATCACTTCGGTTCACTGCTGCTGGCCGCCTCATGGCTGGAAGATCAGGCGCAGGAAGACGAAACGCAGGCGCAGATCG
CCTTGTTTGACGACTATCTGCTGCCTTGGTGCGGCCGTTTCCTCGGCAAAGTGGAAGCTCATGCCACCACCGGTTTTTAC
CGTACGTTGTCGCTACTGGCTCGCGAGTCAATTCAGGCGATGCGTGACGAACTGGCGGAGTACGAACAAGACGAAGAACA
GCCGGGCGAAGAGGGCCAACAGCCTTAA

Upstream 100 bases:

>100_bases
GCTGGACTTTCTCGAACGGCGCGGCAAGCCGGCGATTGCGGAACTGGCCGATTTGTGACATCGTCCCGGCAAATTTTTCC
GTATTGTATAAGGCATTACC

Downstream 100 bases:

>100_bases
TGCCTTGCTGGCCGGTTTACGCCTAACGGCGGAGCCGGCCACTTTCCCCGCTACACAGGTTTTCATCCCCCATACGTAAA
TTGACAAATAATCCCCTAAT

Product: cytoplasmic chaperone TorD family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 195; Mature: 195

Protein sequence:

>195_residues
MNEFSVVCRVLGTLFYRQPQDPLLVPLFTLIKEGKLKQHWPLEQDELLVRLQQGCDVNQLSSDFNAMFVGSECSVSPFRS
AYVEGATEAEVRTFLQQRGMPLSEAPADHFGSLLLAASWLEDQAQEDETQAQIALFDDYLLPWCGRFLGKVEAHATTGFY
RTLSLLARESIQAMRDELAEYEQDEEQPGEEGQQP

Sequences:

>Translated_195_residues
MNEFSVVCRVLGTLFYRQPQDPLLVPLFTLIKEGKLKQHWPLEQDELLVRLQQGCDVNQLSSDFNAMFVGSECSVSPFRS
AYVEGATEAEVRTFLQQRGMPLSEAPADHFGSLLLAASWLEDQAQEDETQAQIALFDDYLLPWCGRFLGKVEAHATTGFY
RTLSLLARESIQAMRDELAEYEQDEEQPGEEGQQP
>Mature_195_residues
MNEFSVVCRVLGTLFYRQPQDPLLVPLFTLIKEGKLKQHWPLEQDELLVRLQQGCDVNQLSSDFNAMFVGSECSVSPFRS
AYVEGATEAEVRTFLQQRGMPLSEAPADHFGSLLLAASWLEDQAQEDETQAQIALFDDYLLPWCGRFLGKVEAHATTGFY
RTLSLLARESIQAMRDELAEYEQDEEQPGEEGQQP

Specific function: Unknown

COG id: COG3381

COG function: function code R; Uncharacterized component of anaerobic dehydrogenases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the torD/dmsD family [H]

Homologues:

Organism=Escherichia coli, GI1787272, Length=187, Percent_Identity=69.5187165775401, Blast_Score=283, Evalue=4e-78,
Organism=Escherichia coli, GI87081942, Length=190, Percent_Identity=30, Blast_Score=82, Evalue=2e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020945 [H]

Pfam domain/function: PF02613 Nitrate_red_del [H]

EC number: NA

Molecular weight: Translated: 22080; Mature: 22080

Theoretical pI: Translated: 4.10; Mature: 4.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNEFSVVCRVLGTLFYRQPQDPLLVPLFTLIKEGKLKQHWPLEQDELLVRLQQGCDVNQL
CCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCHHHH
SSDFNAMFVGSECSVSPFRSAYVEGATEAEVRTFLQQRGMPLSEAPADHFGSLLLAASWL
HCCCCEEEECCCCCCCHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH
EDQAQEDETQAQIALFDDYLLPWCGRFLGKVEAHATTGFYRTLSLLARESIQAMRDELAE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YEQDEEQPGEEGQQP
HHHHHCCCCCCCCCC
>Mature Secondary Structure
MNEFSVVCRVLGTLFYRQPQDPLLVPLFTLIKEGKLKQHWPLEQDELLVRLQQGCDVNQL
CCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCHHHH
SSDFNAMFVGSECSVSPFRSAYVEGATEAEVRTFLQQRGMPLSEAPADHFGSLLLAASWL
HCCCCEEEECCCCCCCHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH
EDQAQEDETQAQIALFDDYLLPWCGRFLGKVEAHATTGFYRTLSLLARESIQAMRDELAE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YEQDEEQPGEEGQQP
HHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]