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The map label for this gene is ybiH [H]

Identifier: 157369573

GI number: 157369573

Start: 1460119

End: 1460817

Strand: Reverse

Name: ybiH [H]

Synonym: Spro_1330

Alternate gene names: 157369573

Gene position: 1460817-1460119 (Counterclockwise)

Preceding gene: 157369575

Following gene: 157369572

Centisome position: 26.81

GC content: 58.51

Gene sequence:

>699_bases
ATGCCAAATAATCAGACTGCCGGCCGGGCACGGGGCGAGCAAGCGCGTCAGCAGTTGATCGCCGCCGCCATCGAAATGTT
CGGTGAATACGGCATTCAGGGGGCCACCACCCGCGATATTGCCCAGCGTGCCGGGCACAACATCGCCGCCATCACCTACT
ACTTCAATTCTAAAGAAGGCCTGTATCTGGCCGTCGCACAATGGATTGCCGATTTTATCCAGCAGGCGTTTCGCCCGCTG
GCCGAAGAGATTGACCGCTTCTGGCAACTCCCGGAAGCCGAACGTCTACCGGAGCATTACCTCGAACATCTGAAACGCGG
CCTGCTGGCGTTCAGCGATCTGATGACTCAACCGCAGACGCTGAATCTGAGCAAAATCATGTCGCGCGAGCAGCTCTCCC
CCACCGATGCCTATCCGCTGATCCACCAACAGGTGGTGGCGCCGCTGCATAACAAGCTTTGCCGCCTGCTGGCGGCCTAC
ACCGGCATCGATCCGCAGTCGACCAAAATTGTGCTGCATACCCACGCGCTGATCGGTGAAGTGTTGTCGTTTCGCGTAGC
GCGGGAAACCGTCCGCCGACAGGCCGGTTGGCAGCAGATCGACACTGCCGAGGCGGAACAAATCAGCGAAGTACTGGCTG
AACACATTGAGATTCTGGTTAATGGGCTGCGCCAACGCTATGGCGCGTATACCCTATAG

Upstream 100 bases:

>100_bases
AAAGATACCCTTAAATAAACCGCGGTTACTGATTGCATTTCGTGCAATCTGGCATAAAGTTAATCATATGATTGATTAAC
TTTTATGAGCGCCATCAATA

Downstream 100 bases:

>100_bases
CTTTCAAGTTGCAGCTAGGCGGCCAGCTCGCTCATCCCCAGGCGCTTACTCAAGTAAGTAACTGGGGTGAGCGAGTGCAG
GTAACAACGCTGCAACTTGA

Product: putative DNA-binding transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 232; Mature: 231

Protein sequence:

>232_residues
MPNNQTAGRARGEQARQQLIAAAIEMFGEYGIQGATTRDIAQRAGHNIAAITYYFNSKEGLYLAVAQWIADFIQQAFRPL
AEEIDRFWQLPEAERLPEHYLEHLKRGLLAFSDLMTQPQTLNLSKIMSREQLSPTDAYPLIHQQVVAPLHNKLCRLLAAY
TGIDPQSTKIVLHTHALIGEVLSFRVARETVRRQAGWQQIDTAEAEQISEVLAEHIEILVNGLRQRYGAYTL

Sequences:

>Translated_232_residues
MPNNQTAGRARGEQARQQLIAAAIEMFGEYGIQGATTRDIAQRAGHNIAAITYYFNSKEGLYLAVAQWIADFIQQAFRPL
AEEIDRFWQLPEAERLPEHYLEHLKRGLLAFSDLMTQPQTLNLSKIMSREQLSPTDAYPLIHQQVVAPLHNKLCRLLAAY
TGIDPQSTKIVLHTHALIGEVLSFRVARETVRRQAGWQQIDTAEAEQISEVLAEHIEILVNGLRQRYGAYTL
>Mature_231_residues
PNNQTAGRARGEQARQQLIAAAIEMFGEYGIQGATTRDIAQRAGHNIAAITYYFNSKEGLYLAVAQWIADFIQQAFRPLA
EEIDRFWQLPEAERLPEHYLEHLKRGLLAFSDLMTQPQTLNLSKIMSREQLSPTDAYPLIHQQVVAPLHNKLCRLLAAYT
GIDPQSTKIVLHTHALIGEVLSFRVARETVRRQAGWQQIDTAEAEQISEVLAEHIEILVNGLRQRYGAYTL

Specific function: Unknown

COG id: COG1309

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081783, Length=223, Percent_Identity=53.3632286995516, Blast_Score=238, Evalue=4e-64,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647
- InterPro:   IPR015292 [H]

Pfam domain/function: PF09209 DUF1956; PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 26275; Mature: 26144

Theoretical pI: Translated: 6.72; Mature: 6.72

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPNNQTAGRARGEQARQQLIAAAIEMFGEYGIQGATTRDIAQRAGHNIAAITYYFNSKEG
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCEEEEEEEECCCCC
LYLAVAQWIADFIQQAFRPLAEEIDRFWQLPEAERLPEHYLEHLKRGLLAFSDLMTQPQT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCHHHHHHHHHHHHHHHHHHHCCCCC
LNLSKIMSREQLSPTDAYPLIHQQVVAPLHNKLCRLLAAYTGIDPQSTKIVLHTHALIGE
CCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHH
VLSFRVARETVRRQAGWQQIDTAEAEQISEVLAEHIEILVNGLRQRYGAYTL
HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
PNNQTAGRARGEQARQQLIAAAIEMFGEYGIQGATTRDIAQRAGHNIAAITYYFNSKEG
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCEEEEEEEECCCCC
LYLAVAQWIADFIQQAFRPLAEEIDRFWQLPEAERLPEHYLEHLKRGLLAFSDLMTQPQT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCHHHHHHHHHHHHHHHHHHHCCCCC
LNLSKIMSREQLSPTDAYPLIHQQVVAPLHNKLCRLLAAYTGIDPQSTKIVLHTHALIGE
CCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHH
VLSFRVARETVRRQAGWQQIDTAEAEQISEVLAEHIEILVNGLRQRYGAYTL
HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8037924; 8905232; 9278503 [H]